Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736347
Identifier: 187736347
GI number: 187736347
Start: 2267326
End: 2268543
Strand: Direct
Name: 187736347
Synonym: Amuc_1864
Alternate gene names: NA
Gene position: 2267326-2268543 (Clockwise)
Preceding gene: 187736333
Following gene: 187736348
Centisome position: 85.11
GC content: 56.4
Gene sequence:
>1218_bases ATGAGTTTCAGGCAGCGGCGGAGAAACGGACTGTTCCGGGTTTCCTGGGGCACATGCCTTTTGCTGTCTGTGCTGGCACA CCTGTTTTTGCTGGCGGGGAGCTGCCTGGTTCCTGAAGAATGGCTGGCTTCCCCACGTCCGGCTGAAGCGGCGCGGAGGA AAGTGGCTGTAAGCGCGCGCATGGTAAAGAAAGTGGAACCTCAACTGGAGAGCCGGAGACAAGAGCCCGCGGAATATCTG CCTGCCGTCGTGAAGACCAATGAGGAGCAGGAAAGCGCCACCAGGCCGGAAGTGCCCAAATTCCAGAGCAACAGGAACAC GCGGGCGGAAGGCGGCCGGAAGGATCCGGACGGCGACAGGGATATGCCCGCCCAGGATGGCGTGGAACGGGAAAACGGAG AGATTGTCCTTTTTAACCAGGAAAGGCAGGATGGGGATTTAAGCCATGAACGGGACGGCAACAAAAACGCCTCCCCCGGA GCTTCTTCCAATGTTCCCTACCAGCCCCTGGAACCATCCATGCCGCCTGCCGGTCATCCCGGTTCCCTGGCTCATTCTCC CGTCAAGAAGGGAGAGCCAGGCAAATCGGAAGAGGAAAAAACGGCCCGACAAAACATCCGTCATGCACAGGAGAAGGCCA TGCAGCTTCCCCATGCGGTAGTGTTGCCCAGCCCCGGAGATTCGGAGAAGCCGGATCCGCTTGAGGAATTGGCCAAAAGC ATTGCGAAAGGGGCGGACAATCCTCCCCTGAATCTTCCCAATCTGGATTTGGTGCCCAATACAAAACCGGTTCAGAAACA GCCCTTGTATGATCCCATGTTCAATGCGGAGAGCCAGCCCGGCTTCAAGACACATGAGCGGAAGACCAAGCAGGTCGGCA AATTCAGCTTTGGCCGCCGTCCGACATTGGATGTGGAAGCTACGCCCATGGGAACGTACCAGGCGATCGTTTACCGGGCT ATCGGGGAACAATGGTACCGCCAGTGCGATTTGAACCGCGACCTGATTGTTACCGGAACTGTGCGCATCCGCATCCTGAT TAACAAGAATGGCAAAATTTCGTCTATGAGGCAGACTTCCCGCGTGGGAGCCAGCGAGGTACAGAAGTCCTTTACCTTCC TCGCCATCAAACTCGCCAGGCTTCCAGCGATGCCCCCGGAGGTAAGGAGTATGCTTGTGGGGGATTCTTTGGAAATGTAT TTCGATTTCAATTTTTAA
Upstream 100 bases:
>100_bases CCTGCACATGGTCTTGTGCAATACTAAATTACGGAATCGTCCTTCATCATGTCTCCTTTCTACATTGCATTCGTCATGGA ACCGTGAAAACTTTACCTCC
Downstream 100 bases:
>100_bases CAACCTACCATCCTGCAACAAATACCATTCACAGATATATGATGATGAACTTGATCAAAGACTGCATTACATTCTTCCAG GCAGGCGGCGTTTTCATGTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 405; Mature: 404
Protein sequence:
>405_residues MSFRQRRRNGLFRVSWGTCLLLSVLAHLFLLAGSCLVPEEWLASPRPAEAARRKVAVSARMVKKVEPQLESRRQEPAEYL PAVVKTNEEQESATRPEVPKFQSNRNTRAEGGRKDPDGDRDMPAQDGVERENGEIVLFNQERQDGDLSHERDGNKNASPG ASSNVPYQPLEPSMPPAGHPGSLAHSPVKKGEPGKSEEEKTARQNIRHAQEKAMQLPHAVVLPSPGDSEKPDPLEELAKS IAKGADNPPLNLPNLDLVPNTKPVQKQPLYDPMFNAESQPGFKTHERKTKQVGKFSFGRRPTLDVEATPMGTYQAIVYRA IGEQWYRQCDLNRDLIVTGTVRIRILINKNGKISSMRQTSRVGASEVQKSFTFLAIKLARLPAMPPEVRSMLVGDSLEMY FDFNF
Sequences:
>Translated_405_residues MSFRQRRRNGLFRVSWGTCLLLSVLAHLFLLAGSCLVPEEWLASPRPAEAARRKVAVSARMVKKVEPQLESRRQEPAEYL PAVVKTNEEQESATRPEVPKFQSNRNTRAEGGRKDPDGDRDMPAQDGVERENGEIVLFNQERQDGDLSHERDGNKNASPG ASSNVPYQPLEPSMPPAGHPGSLAHSPVKKGEPGKSEEEKTARQNIRHAQEKAMQLPHAVVLPSPGDSEKPDPLEELAKS IAKGADNPPLNLPNLDLVPNTKPVQKQPLYDPMFNAESQPGFKTHERKTKQVGKFSFGRRPTLDVEATPMGTYQAIVYRA IGEQWYRQCDLNRDLIVTGTVRIRILINKNGKISSMRQTSRVGASEVQKSFTFLAIKLARLPAMPPEVRSMLVGDSLEMY FDFNF >Mature_404_residues SFRQRRRNGLFRVSWGTCLLLSVLAHLFLLAGSCLVPEEWLASPRPAEAARRKVAVSARMVKKVEPQLESRRQEPAEYLP AVVKTNEEQESATRPEVPKFQSNRNTRAEGGRKDPDGDRDMPAQDGVERENGEIVLFNQERQDGDLSHERDGNKNASPGA SSNVPYQPLEPSMPPAGHPGSLAHSPVKKGEPGKSEEEKTARQNIRHAQEKAMQLPHAVVLPSPGDSEKPDPLEELAKSI AKGADNPPLNLPNLDLVPNTKPVQKQPLYDPMFNAESQPGFKTHERKTKQVGKFSFGRRPTLDVEATPMGTYQAIVYRAI GEQWYRQCDLNRDLIVTGTVRIRILINKNGKISSMRQTSRVGASEVQKSFTFLAIKLARLPAMPPEVRSMLVGDSLEMYF DFNF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45204; Mature: 45073
Theoretical pI: Translated: 9.62; Mature: 9.62
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFRQRRRNGLFRVSWGTCLLLSVLAHLFLLAGSCLVPEEWLASPRPAEAARRKVAVSAR CCHHHHHHCCCEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHH MVKKVEPQLESRRQEPAEYLPAVVKTNEEQESATRPEVPKFQSNRNTRAEGGRKDPDGDR HHHHHCHHHHHHHCCHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC DMPAQDGVERENGEIVLFNQERQDGDLSHERDGNKNASPGASSNVPYQPLEPSMPPAGHP CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GSLAHSPVKKGEPGKSEEEKTARQNIRHAQEKAMQLPHAVVLPSPGDSEKPDPLEELAKS CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHH IAKGADNPPLNLPNLDLVPNTKPVQKQPLYDPMFNAESQPGFKTHERKTKQVGKFSFGRR HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC PTLDVEATPMGTYQAIVYRAIGEQWYRQCDLNRDLIVTGTVRIRILINKNGKISSMRQTS CCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCHHHHHHH RVGASEVQKSFTFLAIKLARLPAMPPEVRSMLVGDSLEMYFDFNF HCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEECCC >Mature Secondary Structure SFRQRRRNGLFRVSWGTCLLLSVLAHLFLLAGSCLVPEEWLASPRPAEAARRKVAVSAR CHHHHHHCCCEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHH MVKKVEPQLESRRQEPAEYLPAVVKTNEEQESATRPEVPKFQSNRNTRAEGGRKDPDGDR HHHHHCHHHHHHHCCHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC DMPAQDGVERENGEIVLFNQERQDGDLSHERDGNKNASPGASSNVPYQPLEPSMPPAGHP CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GSLAHSPVKKGEPGKSEEEKTARQNIRHAQEKAMQLPHAVVLPSPGDSEKPDPLEELAKS CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHH IAKGADNPPLNLPNLDLVPNTKPVQKQPLYDPMFNAESQPGFKTHERKTKQVGKFSFGRR HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC PTLDVEATPMGTYQAIVYRAIGEQWYRQCDLNRDLIVTGTVRIRILINKNGKISSMRQTS CCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCHHHHHHH RVGASEVQKSFTFLAIKLARLPAMPPEVRSMLVGDSLEMYFDFNF HCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA