Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is alr [H]
Identifier: 187736333
GI number: 187736333
Start: 2249318
End: 2250421
Strand: Direct
Name: alr [H]
Synonym: Amuc_1850
Alternate gene names: 187736333
Gene position: 2249318-2250421 (Clockwise)
Preceding gene: 187736330
Following gene: 187736347
Centisome position: 84.43
GC content: 55.98
Gene sequence:
>1104_bases ATGAGTTGCACAATCCCTCCCAGAGCATGGGCCCAGATTGATACCAATGCGTTGAGGCACAATTTAAACGTCGTCCGGCG CGTCATGCCGGATCACCGTCTGATGGCTATTGTGAAGGCGGAGGCTTATGGCCACGGTCTGGAAGGGGTGGTGAAGGCCC TGGATGGCGAAGATTGCGCTTTTTTCGGCGTTGCCACGGTGGCGGAGGCCTGCCGGGTGAGGGATGCCGGGGCAAAAACA TGCCCGTTTATTCTCGGCCCCTGTTTTGAGGGGGAGCGGGAGGAAATCGTGCAGAACGGCTGGCGCGCCGCTCTTTCCAG CATGGAAGAGGCGGAGCATTTCAATTCCCTGGGCGCCCTTTACGGCAAAACCGTCCATGTCCATTTGGGCGTGGATACCG GCATGGGGCGCAGCGGTTTTTTACCGAGTGAATTGCACGGCCTGACGGACAAGCTCAAACAGTTCAGTTATCTGGATCTG GAGGGCGTGTTTTCCCATTTATCCGCAGCTTCCGATGATATTTCCTTCACCCACGGACAGATCAGCGGCTTTACGGAAGC CGTAAATGAACTTTCCCAAGGCCATCGGTACAAGTTCCGGCACCTGTGCAGCAGCGCCGCTGTGTTTAATTACAAGGTTC CCTGCGCCAATATGGCGAGGCTGGGCAGAATCCTGTACGGGTATTCCCCCATGCCGTCTCCCTATAATAAGGAGCTGCGG CCTACAATGACCCTGTACAGCCGCATTACTCTGATACGCACGCTGCCGGGAAATCACGGCGTTTCCTACAACCACTGCTA TATAACGAAGGGGAGCACGAAGGTGGCCACTATCGGCATCGGTTATGCGGATGGCTATCTTCAATATCTGTCTAACCAGG GAGCGAGGGTGTATATCAATGGCCAGTACTGTCCGGTTTTGGGCCGTGTGACGATGGACCAGATCATGGTGGACGTTACT TACATGGACCATGTGGAGACCGGAGACCTGGTGGAAATCATGGGGCCTAATGTAAGCTGGGAGGAACTGACGCGCCGTGC CAATACCATCCCCAGCAATGTGCTGACCAGCATCAGCGCCCGCGTGCCCCGGATTTACGTGTAG
Upstream 100 bases:
>100_bases AATGACCGGTGTACAGTTTCTCCGAGGGACGGTTTGGAAAAGTGGAAAGGTGGCTTAATTCCGGCTTGTACAGCATCAAC CGTCTTCCTACACTCCGGGC
Downstream 100 bases:
>100_bases GATAATGCCGGGGGCATGGTGATTAAAAGCTGTTGCCCGCCGCCCGAAAAAAATCAGGGGATTTGTTTGCAGATATGTTT TTCCCCGGCGGACACGGATA
Product: alanine racemase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 367; Mature: 366
Protein sequence:
>367_residues MSCTIPPRAWAQIDTNALRHNLNVVRRVMPDHRLMAIVKAEAYGHGLEGVVKALDGEDCAFFGVATVAEACRVRDAGAKT CPFILGPCFEGEREEIVQNGWRAALSSMEEAEHFNSLGALYGKTVHVHLGVDTGMGRSGFLPSELHGLTDKLKQFSYLDL EGVFSHLSAASDDISFTHGQISGFTEAVNELSQGHRYKFRHLCSSAAVFNYKVPCANMARLGRILYGYSPMPSPYNKELR PTMTLYSRITLIRTLPGNHGVSYNHCYITKGSTKVATIGIGYADGYLQYLSNQGARVYINGQYCPVLGRVTMDQIMVDVT YMDHVETGDLVEIMGPNVSWEELTRRANTIPSNVLTSISARVPRIYV
Sequences:
>Translated_367_residues MSCTIPPRAWAQIDTNALRHNLNVVRRVMPDHRLMAIVKAEAYGHGLEGVVKALDGEDCAFFGVATVAEACRVRDAGAKT CPFILGPCFEGEREEIVQNGWRAALSSMEEAEHFNSLGALYGKTVHVHLGVDTGMGRSGFLPSELHGLTDKLKQFSYLDL EGVFSHLSAASDDISFTHGQISGFTEAVNELSQGHRYKFRHLCSSAAVFNYKVPCANMARLGRILYGYSPMPSPYNKELR PTMTLYSRITLIRTLPGNHGVSYNHCYITKGSTKVATIGIGYADGYLQYLSNQGARVYINGQYCPVLGRVTMDQIMVDVT YMDHVETGDLVEIMGPNVSWEELTRRANTIPSNVLTSISARVPRIYV >Mature_366_residues SCTIPPRAWAQIDTNALRHNLNVVRRVMPDHRLMAIVKAEAYGHGLEGVVKALDGEDCAFFGVATVAEACRVRDAGAKTC PFILGPCFEGEREEIVQNGWRAALSSMEEAEHFNSLGALYGKTVHVHLGVDTGMGRSGFLPSELHGLTDKLKQFSYLDLE GVFSHLSAASDDISFTHGQISGFTEAVNELSQGHRYKFRHLCSSAAVFNYKVPCANMARLGRILYGYSPMPSPYNKELRP TMTLYSRITLIRTLPGNHGVSYNHCYITKGSTKVATIGIGYADGYLQYLSNQGARVYINGQYCPVLGRVTMDQIMVDVTY MDHVETGDLVEIMGPNVSWEELTRRANTIPSNVLTSISARVPRIYV
Specific function: Provides the D-alanine required for cell wall biosynthesis [H]
COG id: COG0787
COG function: function code M; Alanine racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the alanine racemase family [H]
Homologues:
Organism=Escherichia coli, GI1787439, Length=369, Percent_Identity=28.1842818428184, Blast_Score=136, Evalue=2e-33, Organism=Escherichia coli, GI1790487, Length=362, Percent_Identity=29.0055248618785, Blast_Score=134, Evalue=9e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000821 - InterPro: IPR009006 - InterPro: IPR011079 - InterPro: IPR001608 - InterPro: IPR020622 [H]
Pfam domain/function: PF00842 Ala_racemase_C; PF01168 Ala_racemase_N [H]
EC number: =5.1.1.1 [H]
Molecular weight: Translated: 40524; Mature: 40393
Theoretical pI: Translated: 7.36; Mature: 7.36
Prosite motif: PS00395 ALANINE_RACEMASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSCTIPPRAWAQIDTNALRHNLNVVRRVMPDHRLMAIVKAEAYGHGLEGVVKALDGEDCA CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCHHHHHHHCCCCCCH FFGVATVAEACRVRDAGAKTCPFILGPCFEGEREEIVQNGWRAALSSMEEAEHFNSLGAL HHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YGKTVHVHLGVDTGMGRSGFLPSELHGLTDKLKQFSYLDLEGVFSHLSAASDDISFTHGQ HCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEECCCC ISGFTEAVNELSQGHRYKFRHLCSSAAVFNYKVPCANMARLGRILYGYSPMPSPYNKELR HHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCC PTMTLYSRITLIRTLPGNHGVSYNHCYITKGSTKVATIGIGYADGYLQYLSNQGARVYIN HHHHHHHHHHHEEECCCCCCCCCCEEEEECCCCEEEEEEECHHHHHHHHHHCCCCEEEEC GQYCPVLGRVTMDQIMVDVTYMDHVETGDLVEIMGPNVSWEELTRRANTIPSNVLTSISA CCCCCCHHHHHHHHHHEEEHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCHHHHHHHHHH RVPRIYV CCCEECC >Mature Secondary Structure SCTIPPRAWAQIDTNALRHNLNVVRRVMPDHRLMAIVKAEAYGHGLEGVVKALDGEDCA CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCHHHHHHHCCCCCCH FFGVATVAEACRVRDAGAKTCPFILGPCFEGEREEIVQNGWRAALSSMEEAEHFNSLGAL HHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YGKTVHVHLGVDTGMGRSGFLPSELHGLTDKLKQFSYLDLEGVFSHLSAASDDISFTHGQ HCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEECCCC ISGFTEAVNELSQGHRYKFRHLCSSAAVFNYKVPCANMARLGRILYGYSPMPSPYNKELR HHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCC PTMTLYSRITLIRTLPGNHGVSYNHCYITKGSTKVATIGIGYADGYLQYLSNQGARVYIN HHHHHHHHHHHEEECCCCCCCCCCEEEEECCCCEEEEEEECHHHHHHHHHHCCCCEEEEC GQYCPVLGRVTMDQIMVDVTYMDHVETGDLVEIMGPNVSWEELTRRANTIPSNVLTSISA CCCCCCHHHHHHHHHHEEEHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCHHHHHHHHHH RVPRIYV CCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA