Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

Click here to switch to the map view.

The map label for this gene is alr [H]

Identifier: 187736333

GI number: 187736333

Start: 2249318

End: 2250421

Strand: Direct

Name: alr [H]

Synonym: Amuc_1850

Alternate gene names: 187736333

Gene position: 2249318-2250421 (Clockwise)

Preceding gene: 187736330

Following gene: 187736347

Centisome position: 84.43

GC content: 55.98

Gene sequence:

>1104_bases
ATGAGTTGCACAATCCCTCCCAGAGCATGGGCCCAGATTGATACCAATGCGTTGAGGCACAATTTAAACGTCGTCCGGCG
CGTCATGCCGGATCACCGTCTGATGGCTATTGTGAAGGCGGAGGCTTATGGCCACGGTCTGGAAGGGGTGGTGAAGGCCC
TGGATGGCGAAGATTGCGCTTTTTTCGGCGTTGCCACGGTGGCGGAGGCCTGCCGGGTGAGGGATGCCGGGGCAAAAACA
TGCCCGTTTATTCTCGGCCCCTGTTTTGAGGGGGAGCGGGAGGAAATCGTGCAGAACGGCTGGCGCGCCGCTCTTTCCAG
CATGGAAGAGGCGGAGCATTTCAATTCCCTGGGCGCCCTTTACGGCAAAACCGTCCATGTCCATTTGGGCGTGGATACCG
GCATGGGGCGCAGCGGTTTTTTACCGAGTGAATTGCACGGCCTGACGGACAAGCTCAAACAGTTCAGTTATCTGGATCTG
GAGGGCGTGTTTTCCCATTTATCCGCAGCTTCCGATGATATTTCCTTCACCCACGGACAGATCAGCGGCTTTACGGAAGC
CGTAAATGAACTTTCCCAAGGCCATCGGTACAAGTTCCGGCACCTGTGCAGCAGCGCCGCTGTGTTTAATTACAAGGTTC
CCTGCGCCAATATGGCGAGGCTGGGCAGAATCCTGTACGGGTATTCCCCCATGCCGTCTCCCTATAATAAGGAGCTGCGG
CCTACAATGACCCTGTACAGCCGCATTACTCTGATACGCACGCTGCCGGGAAATCACGGCGTTTCCTACAACCACTGCTA
TATAACGAAGGGGAGCACGAAGGTGGCCACTATCGGCATCGGTTATGCGGATGGCTATCTTCAATATCTGTCTAACCAGG
GAGCGAGGGTGTATATCAATGGCCAGTACTGTCCGGTTTTGGGCCGTGTGACGATGGACCAGATCATGGTGGACGTTACT
TACATGGACCATGTGGAGACCGGAGACCTGGTGGAAATCATGGGGCCTAATGTAAGCTGGGAGGAACTGACGCGCCGTGC
CAATACCATCCCCAGCAATGTGCTGACCAGCATCAGCGCCCGCGTGCCCCGGATTTACGTGTAG

Upstream 100 bases:

>100_bases
AATGACCGGTGTACAGTTTCTCCGAGGGACGGTTTGGAAAAGTGGAAAGGTGGCTTAATTCCGGCTTGTACAGCATCAAC
CGTCTTCCTACACTCCGGGC

Downstream 100 bases:

>100_bases
GATAATGCCGGGGGCATGGTGATTAAAAGCTGTTGCCCGCCGCCCGAAAAAAATCAGGGGATTTGTTTGCAGATATGTTT
TTCCCCGGCGGACACGGATA

Product: alanine racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MSCTIPPRAWAQIDTNALRHNLNVVRRVMPDHRLMAIVKAEAYGHGLEGVVKALDGEDCAFFGVATVAEACRVRDAGAKT
CPFILGPCFEGEREEIVQNGWRAALSSMEEAEHFNSLGALYGKTVHVHLGVDTGMGRSGFLPSELHGLTDKLKQFSYLDL
EGVFSHLSAASDDISFTHGQISGFTEAVNELSQGHRYKFRHLCSSAAVFNYKVPCANMARLGRILYGYSPMPSPYNKELR
PTMTLYSRITLIRTLPGNHGVSYNHCYITKGSTKVATIGIGYADGYLQYLSNQGARVYINGQYCPVLGRVTMDQIMVDVT
YMDHVETGDLVEIMGPNVSWEELTRRANTIPSNVLTSISARVPRIYV

Sequences:

>Translated_367_residues
MSCTIPPRAWAQIDTNALRHNLNVVRRVMPDHRLMAIVKAEAYGHGLEGVVKALDGEDCAFFGVATVAEACRVRDAGAKT
CPFILGPCFEGEREEIVQNGWRAALSSMEEAEHFNSLGALYGKTVHVHLGVDTGMGRSGFLPSELHGLTDKLKQFSYLDL
EGVFSHLSAASDDISFTHGQISGFTEAVNELSQGHRYKFRHLCSSAAVFNYKVPCANMARLGRILYGYSPMPSPYNKELR
PTMTLYSRITLIRTLPGNHGVSYNHCYITKGSTKVATIGIGYADGYLQYLSNQGARVYINGQYCPVLGRVTMDQIMVDVT
YMDHVETGDLVEIMGPNVSWEELTRRANTIPSNVLTSISARVPRIYV
>Mature_366_residues
SCTIPPRAWAQIDTNALRHNLNVVRRVMPDHRLMAIVKAEAYGHGLEGVVKALDGEDCAFFGVATVAEACRVRDAGAKTC
PFILGPCFEGEREEIVQNGWRAALSSMEEAEHFNSLGALYGKTVHVHLGVDTGMGRSGFLPSELHGLTDKLKQFSYLDLE
GVFSHLSAASDDISFTHGQISGFTEAVNELSQGHRYKFRHLCSSAAVFNYKVPCANMARLGRILYGYSPMPSPYNKELRP
TMTLYSRITLIRTLPGNHGVSYNHCYITKGSTKVATIGIGYADGYLQYLSNQGARVYINGQYCPVLGRVTMDQIMVDVTY
MDHVETGDLVEIMGPNVSWEELTRRANTIPSNVLTSISARVPRIYV

Specific function: Provides the D-alanine required for cell wall biosynthesis [H]

COG id: COG0787

COG function: function code M; Alanine racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alanine racemase family [H]

Homologues:

Organism=Escherichia coli, GI1787439, Length=369, Percent_Identity=28.1842818428184, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1790487, Length=362, Percent_Identity=29.0055248618785, Blast_Score=134, Evalue=9e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000821
- InterPro:   IPR009006
- InterPro:   IPR011079
- InterPro:   IPR001608
- InterPro:   IPR020622 [H]

Pfam domain/function: PF00842 Ala_racemase_C; PF01168 Ala_racemase_N [H]

EC number: =5.1.1.1 [H]

Molecular weight: Translated: 40524; Mature: 40393

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: PS00395 ALANINE_RACEMASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCTIPPRAWAQIDTNALRHNLNVVRRVMPDHRLMAIVKAEAYGHGLEGVVKALDGEDCA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCHHHHHHHCCCCCCH
FFGVATVAEACRVRDAGAKTCPFILGPCFEGEREEIVQNGWRAALSSMEEAEHFNSLGAL
HHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YGKTVHVHLGVDTGMGRSGFLPSELHGLTDKLKQFSYLDLEGVFSHLSAASDDISFTHGQ
HCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEECCCC
ISGFTEAVNELSQGHRYKFRHLCSSAAVFNYKVPCANMARLGRILYGYSPMPSPYNKELR
HHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCC
PTMTLYSRITLIRTLPGNHGVSYNHCYITKGSTKVATIGIGYADGYLQYLSNQGARVYIN
HHHHHHHHHHHEEECCCCCCCCCCEEEEECCCCEEEEEEECHHHHHHHHHHCCCCEEEEC
GQYCPVLGRVTMDQIMVDVTYMDHVETGDLVEIMGPNVSWEELTRRANTIPSNVLTSISA
CCCCCCHHHHHHHHHHEEEHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCHHHHHHHHHH
RVPRIYV
CCCEECC
>Mature Secondary Structure 
SCTIPPRAWAQIDTNALRHNLNVVRRVMPDHRLMAIVKAEAYGHGLEGVVKALDGEDCA
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCHHHHHHHCCCCCCH
FFGVATVAEACRVRDAGAKTCPFILGPCFEGEREEIVQNGWRAALSSMEEAEHFNSLGAL
HHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YGKTVHVHLGVDTGMGRSGFLPSELHGLTDKLKQFSYLDLEGVFSHLSAASDDISFTHGQ
HCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEECCCC
ISGFTEAVNELSQGHRYKFRHLCSSAAVFNYKVPCANMARLGRILYGYSPMPSPYNKELR
HHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCC
PTMTLYSRITLIRTLPGNHGVSYNHCYITKGSTKVATIGIGYADGYLQYLSNQGARVYIN
HHHHHHHHHHHEEECCCCCCCCCCEEEEECCCCEEEEEEECHHHHHHHHHHCCCCEEEEC
GQYCPVLGRVTMDQIMVDVTYMDHVETGDLVEIMGPNVSWEELTRRANTIPSNVLTSISA
CCCCCCHHHHHHHHHHEEEHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCHHHHHHHHHH
RVPRIYV
CCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA