Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187736327
Identifier: 187736327
GI number: 187736327
Start: 2238138
End: 2239082
Strand: Direct
Name: 187736327
Synonym: Amuc_1841
Alternate gene names: NA
Gene position: 2238138-2239082 (Clockwise)
Preceding gene: 187736326
Following gene: 187736328
Centisome position: 84.01
GC content: 50.58
Gene sequence:
>945_bases ATGAGAAATTCATTTTTTCCTGCAATTGGTGTTCTTTCCTTGGCCTCCGCTTTGATTTGTTCCGCGTCTTCCTCCTGGGA GACTGATTGGAATAAAGCGCTGGAGAAGGCCGGAAAGGGCGGACATCCTGTGCTGGCTGATTTTACCGGTTCCGACTGGT GTCCCGGATGCATTTACCTGCGCAAAAATATTTTTGACACGGATGCGTTCGCCAAATATGCGGCGGATCATCAATTCGTG CTGCTGGAACTGGATTTCCCCAAGGCTGCCGGGAAAATGCCGCCGGAACAGTTAAAATTCCATGAAGAGCTGATGCGGCG TTATGGCGTTTCCTCGTTCCCATCCGTTCTGTTGATGGAAGGAAATGGCGCTCCCTACGCTAAAATAGTGGGTGCCACCA GAACTCCGGAGGAATATCTGAAAAAACTGGAGGCTGCCGGAGAAACGAGGAGGAAGTTGAAAGAGGCCGTAGCGGCGGCC CAGCCATTGAAAGGAAAGGAAAAACTGGAGCAACTGGTTAAGGCCTTGAACGTGCTTCCGGAAGATTTGCAGCCTTTCCA GAAGGGGTTGATTGCAGAAATTTCCGCTCTGGACCCGGAGGACAAATACGGTTTTGCAAAGAAGTCTGAAAAAGCCGCAG CCATGGAGAAGCAGCGGCTTGTGTGGGAACAGTTCTGCCAAAAATATTCGGGGAGGCTCTCCGCAGAAGAAACGCGCGCC GGCCGGGAGGAAGCATTGCAGATGTTGGAAAAAAAGGATACGCTTCCTCCCATCCGCCTGAAGATCGCCAAATATATCAG TGATGGGTATACCTTGGAACGTAATTTGCCCAAGGCTTTGGAATACCTGGAAATTGCCCGTGATGCCGATCCGGAGTCTC AAGCCGCCAAAAAACTGGAACCGTGGATTGACAATATGCGGAAACATATCAATCAGGAGAAGTAA
Upstream 100 bases:
>100_bases GGCGTCTTTTCTCCGGCATTTCGCGGGGCTTGCGGTTCCGAGGGGGCCAGCCCTTAAAAAAGAATGACAAGCCCCGGTAT CCTGCTATAGTACGGTTAAG
Downstream 100 bases:
>100_bases AAATTGTTCCGAAAGGCATGGCCGTCTTCCGTCGAAGGGGGAGGGCCATGCCTTTCCGTTTTTTATTTTAAACAAAAAAA CAGGGCTGTTGCGCTATGGC
Product: Thioredoxin domain
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 314; Mature: 314
Protein sequence:
>314_residues MRNSFFPAIGVLSLASALICSASSSWETDWNKALEKAGKGGHPVLADFTGSDWCPGCIYLRKNIFDTDAFAKYAADHQFV LLELDFPKAAGKMPPEQLKFHEELMRRYGVSSFPSVLLMEGNGAPYAKIVGATRTPEEYLKKLEAAGETRRKLKEAVAAA QPLKGKEKLEQLVKALNVLPEDLQPFQKGLIAEISALDPEDKYGFAKKSEKAAAMEKQRLVWEQFCQKYSGRLSAEETRA GREEALQMLEKKDTLPPIRLKIAKYISDGYTLERNLPKALEYLEIARDADPESQAAKKLEPWIDNMRKHINQEK
Sequences:
>Translated_314_residues MRNSFFPAIGVLSLASALICSASSSWETDWNKALEKAGKGGHPVLADFTGSDWCPGCIYLRKNIFDTDAFAKYAADHQFV LLELDFPKAAGKMPPEQLKFHEELMRRYGVSSFPSVLLMEGNGAPYAKIVGATRTPEEYLKKLEAAGETRRKLKEAVAAA QPLKGKEKLEQLVKALNVLPEDLQPFQKGLIAEISALDPEDKYGFAKKSEKAAAMEKQRLVWEQFCQKYSGRLSAEETRA GREEALQMLEKKDTLPPIRLKIAKYISDGYTLERNLPKALEYLEIARDADPESQAAKKLEPWIDNMRKHINQEK >Mature_314_residues MRNSFFPAIGVLSLASALICSASSSWETDWNKALEKAGKGGHPVLADFTGSDWCPGCIYLRKNIFDTDAFAKYAADHQFV LLELDFPKAAGKMPPEQLKFHEELMRRYGVSSFPSVLLMEGNGAPYAKIVGATRTPEEYLKKLEAAGETRRKLKEAVAAA QPLKGKEKLEQLVKALNVLPEDLQPFQKGLIAEISALDPEDKYGFAKKSEKAAAMEKQRLVWEQFCQKYSGRLSAEETRA GREEALQMLEKKDTLPPIRLKIAKYISDGYTLERNLPKALEYLEIARDADPESQAAKKLEPWIDNMRKHINQEK
Specific function: Unknown
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35268; Mature: 35268
Theoretical pI: Translated: 8.28; Mature: 8.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNSFFPAIGVLSLASALICSASSSWETDWNKALEKAGKGGHPVLADFTGSDWCPGCIYL CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHH RKNIFDTDAFAKYAADHQFVLLELDFPKAAGKMPPEQLKFHEELMRRYGVSSFPSVLLME HHHHCCHHHHHHHHCCCCEEEEEECCCHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEC GNGAPYAKIVGATRTPEEYLKKLEAAGETRRKLKEAVAAAQPLKGKEKLEQLVKALNVLP CCCCCHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC EDLQPFQKGLIAEISALDPEDKYGFAKKSEKAAAMEKQRLVWEQFCQKYSGRLSAEETRA HHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC GREEALQMLEKKDTLPPIRLKIAKYISDGYTLERNLPKALEYLEIARDADPESQAAKKLE CHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHCCCCHHHHHHHHH PWIDNMRKHINQEK HHHHHHHHHHCCCC >Mature Secondary Structure MRNSFFPAIGVLSLASALICSASSSWETDWNKALEKAGKGGHPVLADFTGSDWCPGCIYL CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHH RKNIFDTDAFAKYAADHQFVLLELDFPKAAGKMPPEQLKFHEELMRRYGVSSFPSVLLME HHHHCCHHHHHHHHCCCCEEEEEECCCHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEC GNGAPYAKIVGATRTPEEYLKKLEAAGETRRKLKEAVAAAQPLKGKEKLEQLVKALNVLP CCCCCHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC EDLQPFQKGLIAEISALDPEDKYGFAKKSEKAAAMEKQRLVWEQFCQKYSGRLSAEETRA HHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC GREEALQMLEKKDTLPPIRLKIAKYISDGYTLERNLPKALEYLEIARDADPESQAAKKLE CHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHCCCCHHHHHHHHH PWIDNMRKHINQEK HHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA