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The map label for this gene is 187736328

Identifier: 187736328

GI number: 187736328

Start: 2239178

End: 2239792

Strand: Direct

Name: 187736328

Synonym: Amuc_1842

Alternate gene names: NA

Gene position: 2239178-2239792 (Clockwise)

Preceding gene: 187736327

Following gene: 187736329

Centisome position: 84.05

GC content: 52.68

Gene sequence:

>615_bases
ATGGCTGATGAAGGAACCGAATGTACGGATGCAGAAATGAATACGCCGGCTTACGTCAGGAATGAGGAGGTTGATGAAGA
AAGCAGCCATTTGCTGAGTTGGGATGAGTGGCTGCGGGAACATGCTTCCCAGCTGCTTCTGTTTGCACGCCAGCAGTCCC
GCTCACCGGAAGATGCGGAGGATATACTTCAGGATGCCCTGGTGCGTTTGGCTCGCAAGGAGGCTTCCGGGGAATTTGTG
GGAGGGCAGGAGGCGTGGCTTTCCTATGTCTTTGCCTCCATCCGGCGTCTGGCGGTGGATTATGGCCGCAAATCCGACCG
CCGCCAGAAAAGGGAGGATGAAGCCTGCGCCTCTGAACGGGACGAAGATGTTTATATGGACCCCTGGTTTTCCAGTGCTG
CGGCAGATGAGGAACTCAAACAGTTCATGGAAATGCAGCTCAGGAAGCTCCCTTCCAAATTCTCCGAGGTCATTGTCTTG
AAAATATGGGGGGAACAAACTTTTCAGCAAATTGCGGAAACGCTGGAAATCTCGCAGAATACGGCGGCGAGCCGGTACCG
TTACGGTATTGACTTGCTCCGCAGGGCTTTGAGAAATAAAAAGAATCAATTCTAA

Upstream 100 bases:

>100_bases
AGTAAAAATTGTTCCGAAAGGCATGGCCGTCTTCCGTCGAAGGGGGAGGGCCATGCCTTTCCGTTTTTTATTTTAAACAA
AAAAACAGGGCTGTTGCGCT

Downstream 100 bases:

>100_bases
TGGCGCTCTACCCTTATGAACCATGAAACAACATCATCCGCCGCAGGGGAGGAAGACGGCGGTACTGCCGTCCTGCAGCC
CCTTCCCGTATCTGATGAAC

Product: RNA polymerase, sigma-24 subunit, ECF subfamily

Products: NA

Alternate protein names: Sigma Factor SigH; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MADEGTECTDAEMNTPAYVRNEEVDEESSHLLSWDEWLREHASQLLLFARQQSRSPEDAEDILQDALVRLARKEASGEFV
GGQEAWLSYVFASIRRLAVDYGRKSDRRQKREDEACASERDEDVYMDPWFSSAAADEELKQFMEMQLRKLPSKFSEVIVL
KIWGEQTFQQIAETLEISQNTAASRYRYGIDLLRRALRNKKNQF

Sequences:

>Translated_204_residues
MADEGTECTDAEMNTPAYVRNEEVDEESSHLLSWDEWLREHASQLLLFARQQSRSPEDAEDILQDALVRLARKEASGEFV
GGQEAWLSYVFASIRRLAVDYGRKSDRRQKREDEACASERDEDVYMDPWFSSAAADEELKQFMEMQLRKLPSKFSEVIVL
KIWGEQTFQQIAETLEISQNTAASRYRYGIDLLRRALRNKKNQF
>Mature_203_residues
ADEGTECTDAEMNTPAYVRNEEVDEESSHLLSWDEWLREHASQLLLFARQQSRSPEDAEDILQDALVRLARKEASGEFVG
GQEAWLSYVFASIRRLAVDYGRKSDRRQKREDEACASERDEDVYMDPWFSSAAADEELKQFMEMQLRKLPSKFSEVIVLK
IWGEQTFQQIAETLEISQNTAASRYRYGIDLLRRALRNKKNQF

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23756; Mature: 23624

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADEGTECTDAEMNTPAYVRNEEVDEESSHLLSWDEWLREHASQLLLFARQQSRSPEDAE
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
DILQDALVRLARKEASGEFVGGQEAWLSYVFASIRRLAVDYGRKSDRRQKREDEACASER
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
DEDVYMDPWFSSAAADEELKQFMEMQLRKLPSKFSEVIVLKIWGEQTFQQIAETLEISQN
CCCCEECCCCCHHCCHHHHHHHHHHHHHHHHHHHHHEEHHHHCCHHHHHHHHHHHHHHHH
TAASRYRYGIDLLRRALRNKKNQF
HHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ADEGTECTDAEMNTPAYVRNEEVDEESSHLLSWDEWLREHASQLLLFARQQSRSPEDAE
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
DILQDALVRLARKEASGEFVGGQEAWLSYVFASIRRLAVDYGRKSDRRQKREDEACASER
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
DEDVYMDPWFSSAAADEELKQFMEMQLRKLPSKFSEVIVLKIWGEQTFQQIAETLEISQN
CCCCEECCCCCHHCCHHHHHHHHHHHHHHHHHHHHHEEHHHHCCHHHHHHHHHHHHHHHH
TAASRYRYGIDLLRRALRNKKNQF
HHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA