Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736281
Identifier: 187736281
GI number: 187736281
Start: 2181989
End: 2182795
Strand: Reverse
Name: 187736281
Synonym: Amuc_1794
Alternate gene names: NA
Gene position: 2182795-2181989 (Counterclockwise)
Preceding gene: 187736297
Following gene: 187736280
Centisome position: 81.93
GC content: 55.51
Gene sequence:
>807_bases ATGACACCGACAAAAGGGGATGTGAAACACTGGTTGAAGGCCATTGGGAAAAACCGTGACTGGCTTGCCATGGAATGCGG TACGGAAAAAGGTACGGTGAATAACTGGCTCTCCCCCTCCGGCCCCTTCCCCGCCAGCGCCATGTTGAAAATCCAATCCC TGATGTCTCAATACAAAACGGTTCGACCGGAAGACGAACCTGTCCAGACCAATCGCCTCGTGCTGGAAATCACGGAAGAG CGCATGAGGAAATATGAACGGGCCGCCTCTGAAAAAGGCGTCCCCCTCCGCCAGTGGCTGACGGATTTGGCAGACGAAGC GGCGGAGGAACGCCAGCTGCGGCCAATGCACTCTCCCCTGGTTCCCCTGGTCAGACAATTTCCGTCCCATGCTGGACACG CCAGGCGTGAATACAGTACGCAAATAATCGGCAACATCGCCGCAGGCTCTCTTGCGGAAAGCGACACCGTCCCGTCTACC ATTTACATGGAAAGGCCCCTGGGTAAAAACGAATACGTGGTCCGCGTAGAAGGGAAATCCATGGAACCCCTCATCCCGGA CGGCTCCCTGGTAATTATGCGGCGCCATACCGCCCCGCCCATCCCCAAACCGGGAACCATCGTGGAATACAACGACGGAC GCGGCGTTACGCTGAAAAAACTGATTCGCAGGAAAAACGCGGAAACAGGAAAAACGGAATACGTGCTGCAGCCCATCAAC CCCGCATTCAAGGACATAACCCCCATGGACGGCGGCAGTATCTCCGGAATATATATGGAAACCCTTGTAAACTACCGCAA AGGCTGA
Upstream 100 bases:
>100_bases GCGCCTTTTTAACGATTTTCGTTAATACATCAACACATTTTAACGAATTCAATTTATTTCTTTCTATCGACAATTCACGA AAATCGTGTATAATCAAGCC
Downstream 100 bases:
>100_bases GCATTCGCCCCTGCCAGGCCCTTTTCCCATTCCGGAAAAAACGCCTCAGCGCAGAAAAGCGGGCAGGAAACTCCTGTTTC CGGAAATCGGACGGGCAGCA
Product: peptidase S24 and S26 domain protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 268; Mature: 267
Protein sequence:
>268_residues MTPTKGDVKHWLKAIGKNRDWLAMECGTEKGTVNNWLSPSGPFPASAMLKIQSLMSQYKTVRPEDEPVQTNRLVLEITEE RMRKYERAASEKGVPLRQWLTDLADEAAEERQLRPMHSPLVPLVRQFPSHAGHARREYSTQIIGNIAAGSLAESDTVPST IYMERPLGKNEYVVRVEGKSMEPLIPDGSLVIMRRHTAPPIPKPGTIVEYNDGRGVTLKKLIRRKNAETGKTEYVLQPIN PAFKDITPMDGGSISGIYMETLVNYRKG
Sequences:
>Translated_268_residues MTPTKGDVKHWLKAIGKNRDWLAMECGTEKGTVNNWLSPSGPFPASAMLKIQSLMSQYKTVRPEDEPVQTNRLVLEITEE RMRKYERAASEKGVPLRQWLTDLADEAAEERQLRPMHSPLVPLVRQFPSHAGHARREYSTQIIGNIAAGSLAESDTVPST IYMERPLGKNEYVVRVEGKSMEPLIPDGSLVIMRRHTAPPIPKPGTIVEYNDGRGVTLKKLIRRKNAETGKTEYVLQPIN PAFKDITPMDGGSISGIYMETLVNYRKG >Mature_267_residues TPTKGDVKHWLKAIGKNRDWLAMECGTEKGTVNNWLSPSGPFPASAMLKIQSLMSQYKTVRPEDEPVQTNRLVLEITEER MRKYERAASEKGVPLRQWLTDLADEAAEERQLRPMHSPLVPLVRQFPSHAGHARREYSTQIIGNIAAGSLAESDTVPSTI YMERPLGKNEYVVRVEGKSMEPLIPDGSLVIMRRHTAPPIPKPGTIVEYNDGRGVTLKKLIRRKNAETGKTEYVLQPINP AFKDITPMDGGSISGIYMETLVNYRKG
Specific function: Unknown
COG id: COG1974
COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30065; Mature: 29934
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPTKGDVKHWLKAIGKNRDWLAMECGTEKGTVNNWLSPSGPFPASAMLKIQSLMSQYKT CCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH VRPEDEPVQTNRLVLEITEERMRKYERAASEKGVPLRQWLTDLADEAAEERQLRPMHSPL CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHH VPLVRQFPSHAGHARREYSTQIIGNIAAGSLAESDTVPSTIYMERPLGKNEYVVRVEGKS HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEEECCCC MEPLIPDGSLVIMRRHTAPPIPKPGTIVEYNDGRGVTLKKLIRRKNAETGKTEYVLQPIN CCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCEEEEECCC PAFKDITPMDGGSISGIYMETLVNYRKG HHHHHCCCCCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure TPTKGDVKHWLKAIGKNRDWLAMECGTEKGTVNNWLSPSGPFPASAMLKIQSLMSQYKT CCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH VRPEDEPVQTNRLVLEITEERMRKYERAASEKGVPLRQWLTDLADEAAEERQLRPMHSPL CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHH VPLVRQFPSHAGHARREYSTQIIGNIAAGSLAESDTVPSTIYMERPLGKNEYVVRVEGKS HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEEECCCC MEPLIPDGSLVIMRRHTAPPIPKPGTIVEYNDGRGVTLKKLIRRKNAETGKTEYVLQPIN CCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCEEEEECCC PAFKDITPMDGGSISGIYMETLVNYRKG HHHHHCCCCCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA