Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is zntR [C]
Identifier: 187736297
GI number: 187736297
Start: 2196923
End: 2197408
Strand: Reverse
Name: zntR [C]
Synonym: Amuc_1810
Alternate gene names: 187736297
Gene position: 2197408-2196923 (Counterclockwise)
Preceding gene: 187736299
Following gene: 187736281
Centisome position: 82.48
GC content: 52.88
Gene sequence:
>486_bases ATGATTAAACAGAAAAATCCATCCGGCACCTACCGCCCTTCTTATGACCGCACCCCCAGATACACTGTCAAGCAGGTTGC GGAAATGATGGAAATGTCAGCCTACACCATCCGGTATTACGAAAACGCCGGATTAATCCCGGACGTGGACCGCAGCGGAG GGAATGCCCGTATGTTTTCCGACTACACCCTGGGGTGGCTCCGCCTGGTCCACTGCCTCCGGATGACGGGCCTCCCGATT GAAGGCGTCAAGCACTACATCGACCTGTGCCAGGAAGGGGATTCCACCATTCCGGAGCGCGCCGAACTGATCTTCAAGCA AGAGAAAAGTCTCCGGGAACAGCTCCGAATCCTGAAAAAACAAATGGAAGTGTTGAAATACAAGAAAAAATTTTATCAGG ATCTTTTAGACAACCGCAGGCCGGACAGCTGCAATCCGCTGAACTACATCAGCGCCAGCGAGCCGAACATCGCGCCTGAG GAATAA
Upstream 100 bases:
>100_bases CCTTGGCCTTTAAATACGTTATTCCCGTGAAGCACAGTAAAAAACTTGTCATCCGGCAACGCCTCGTATATTGGAGTAAC TGTAAGCTATCAGTCACACG
Downstream 100 bases:
>100_bases ACCCTCCCTTAAATCCTCAACAGACGTCGGCCGGGATTTCCAATGAGGAATCCCGGCCGCTCTGCGTTCTTATTTGCTTC CTGCCGCCTCCGCATACATG
Product: MerR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 161; Mature: 161
Protein sequence:
>161_residues MIKQKNPSGTYRPSYDRTPRYTVKQVAEMMEMSAYTIRYYENAGLIPDVDRSGGNARMFSDYTLGWLRLVHCLRMTGLPI EGVKHYIDLCQEGDSTIPERAELIFKQEKSLREQLRILKKQMEVLKYKKKFYQDLLDNRRPDSCNPLNYISASEPNIAPE E
Sequences:
>Translated_161_residues MIKQKNPSGTYRPSYDRTPRYTVKQVAEMMEMSAYTIRYYENAGLIPDVDRSGGNARMFSDYTLGWLRLVHCLRMTGLPI EGVKHYIDLCQEGDSTIPERAELIFKQEKSLREQLRILKKQMEVLKYKKKFYQDLLDNRRPDSCNPLNYISASEPNIAPE E >Mature_161_residues MIKQKNPSGTYRPSYDRTPRYTVKQVAEMMEMSAYTIRYYENAGLIPDVDRSGGNARMFSDYTLGWLRLVHCLRMTGLPI EGVKHYIDLCQEGDSTIPERAELIFKQEKSLREQLRILKKQMEVLKYKKKFYQDLLDNRRPDSCNPLNYISASEPNIAPE E
Specific function: Zinc-Responsive Transcriptional Regulator Of Znta. [C]
COG id: COG0789
COG function: function code K; Predicted transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH merR-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009061 - InterPro: IPR000551 - InterPro: IPR015358 [H]
Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]
EC number: NA
Molecular weight: Translated: 18849; Mature: 18849
Theoretical pI: Translated: 8.73; Mature: 8.73
Prosite motif: PS50937 HTH_MERR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKQKNPSGTYRPSYDRTPRYTVKQVAEMMEMSAYTIRYYENAGLIPDVDRSGGNARMFS CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEECH DYTLGWLRLVHCLRMTGLPIEGVKHYIDLCQEGDSTIPERAELIFKQEKSLREQLRILKK HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH QMEVLKYKKKFYQDLLDNRRPDSCNPLNYISASEPNIAPEE HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MIKQKNPSGTYRPSYDRTPRYTVKQVAEMMEMSAYTIRYYENAGLIPDVDRSGGNARMFS CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEECH DYTLGWLRLVHCLRMTGLPIEGVKHYIDLCQEGDSTIPERAELIFKQEKSLREQLRILKK HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH QMEVLKYKKKFYQDLLDNRRPDSCNPLNYISASEPNIAPEE HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]