Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is zntR [C]

Identifier: 187736297

GI number: 187736297

Start: 2196923

End: 2197408

Strand: Reverse

Name: zntR [C]

Synonym: Amuc_1810

Alternate gene names: 187736297

Gene position: 2197408-2196923 (Counterclockwise)

Preceding gene: 187736299

Following gene: 187736281

Centisome position: 82.48

GC content: 52.88

Gene sequence:

>486_bases
ATGATTAAACAGAAAAATCCATCCGGCACCTACCGCCCTTCTTATGACCGCACCCCCAGATACACTGTCAAGCAGGTTGC
GGAAATGATGGAAATGTCAGCCTACACCATCCGGTATTACGAAAACGCCGGATTAATCCCGGACGTGGACCGCAGCGGAG
GGAATGCCCGTATGTTTTCCGACTACACCCTGGGGTGGCTCCGCCTGGTCCACTGCCTCCGGATGACGGGCCTCCCGATT
GAAGGCGTCAAGCACTACATCGACCTGTGCCAGGAAGGGGATTCCACCATTCCGGAGCGCGCCGAACTGATCTTCAAGCA
AGAGAAAAGTCTCCGGGAACAGCTCCGAATCCTGAAAAAACAAATGGAAGTGTTGAAATACAAGAAAAAATTTTATCAGG
ATCTTTTAGACAACCGCAGGCCGGACAGCTGCAATCCGCTGAACTACATCAGCGCCAGCGAGCCGAACATCGCGCCTGAG
GAATAA

Upstream 100 bases:

>100_bases
CCTTGGCCTTTAAATACGTTATTCCCGTGAAGCACAGTAAAAAACTTGTCATCCGGCAACGCCTCGTATATTGGAGTAAC
TGTAAGCTATCAGTCACACG

Downstream 100 bases:

>100_bases
ACCCTCCCTTAAATCCTCAACAGACGTCGGCCGGGATTTCCAATGAGGAATCCCGGCCGCTCTGCGTTCTTATTTGCTTC
CTGCCGCCTCCGCATACATG

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MIKQKNPSGTYRPSYDRTPRYTVKQVAEMMEMSAYTIRYYENAGLIPDVDRSGGNARMFSDYTLGWLRLVHCLRMTGLPI
EGVKHYIDLCQEGDSTIPERAELIFKQEKSLREQLRILKKQMEVLKYKKKFYQDLLDNRRPDSCNPLNYISASEPNIAPE
E

Sequences:

>Translated_161_residues
MIKQKNPSGTYRPSYDRTPRYTVKQVAEMMEMSAYTIRYYENAGLIPDVDRSGGNARMFSDYTLGWLRLVHCLRMTGLPI
EGVKHYIDLCQEGDSTIPERAELIFKQEKSLREQLRILKKQMEVLKYKKKFYQDLLDNRRPDSCNPLNYISASEPNIAPE
E
>Mature_161_residues
MIKQKNPSGTYRPSYDRTPRYTVKQVAEMMEMSAYTIRYYENAGLIPDVDRSGGNARMFSDYTLGWLRLVHCLRMTGLPI
EGVKHYIDLCQEGDSTIPERAELIFKQEKSLREQLRILKKQMEVLKYKKKFYQDLLDNRRPDSCNPLNYISASEPNIAPE
E

Specific function: Zinc-Responsive Transcriptional Regulator Of Znta. [C]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 18849; Mature: 18849

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKQKNPSGTYRPSYDRTPRYTVKQVAEMMEMSAYTIRYYENAGLIPDVDRSGGNARMFS
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEECH
DYTLGWLRLVHCLRMTGLPIEGVKHYIDLCQEGDSTIPERAELIFKQEKSLREQLRILKK
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QMEVLKYKKKFYQDLLDNRRPDSCNPLNYISASEPNIAPEE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIKQKNPSGTYRPSYDRTPRYTVKQVAEMMEMSAYTIRYYENAGLIPDVDRSGGNARMFS
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEECH
DYTLGWLRLVHCLRMTGLPIEGVKHYIDLCQEGDSTIPERAELIFKQEKSLREQLRILKK
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QMEVLKYKKKFYQDLLDNRRPDSCNPLNYISASEPNIAPEE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]