Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736275
Identifier: 187736275
GI number: 187736275
Start: 2175508
End: 2177031
Strand: Direct
Name: 187736275
Synonym: Amuc_1788
Alternate gene names: NA
Gene position: 2175508-2177031 (Clockwise)
Preceding gene: 187736274
Following gene: 187736276
Centisome position: 81.66
GC content: 59.71
Gene sequence:
>1524_bases ATGTTTGATCTTCCCCACAACTTTGGCGATTACACGCTGGTGGCATTTATTGGCCGCACGCGCGGAGGAATTCTTTATCA GGCCATCCAGCAGGGCATGGACCGTTCCGTGTTTCTGGAGTTGCTGGATCCGGACAATCCGGAGGGGGTGGGCGTGGAGG ATTTTCTGATGAAGGCCCGCACGCGCGCCGCCATTAATGCTCCGGTGCTGGGCACCGTCTATGAAGCGTCCCAGGCCCAG GGATACTGGTTCGTCACCAGCGAACAGCTGGGAGGCTCATCCCTCCAGTCCATGCTGGACCGCGGGCAGACCCTGTCCAT GAAGGATTTGCTGAAGGTGATTGAAACGGTCGGCAACGTGTGCGGCAGGTATGAGCGTCTGCGGACCGCTTTCAATATCA TGGAGCCGCGTCACATTTTCCTGGATGACAAGTCTGCCGTGCGGCTGATGAATACGGCCGTGCCCGGTGACTTTCACGAA GAAACATCCCGCGACCAGATGAAGCGCCTGGGCATCGACCTGCCTCCTCTGGTGACTCCGGATGTGCCCGGAACCACGCG GATGCGCACCCTGCTGGAATGGATGAGAGAAGGGCAGAACGGAAAGCCGATGCAATGGGACCAGGTTATGGAGCTGGTTG CTGCGGTCCGCGAACAGCTGGGGCTTTCCCCTCGGGTTACCACCCACCGCTATACCGTCCCCGTGGAATCCCGCAGAAAA GCCGGAAAAAAGCTGCTTTGGGCCGGAATGGGCCTGCTGGGCGTGGGGATAGCCGCGGCTGCCGTTCTTCTTTTATTCCC CCGGGAGAAGGAAACCGTATCCCGTCCCCATGTTCCGGCTCCTAAACATTATCCGGATTTTTCCTCCAGCGATCATACGG AAGTCCGCGTAACTCTTCCCGGAGGAGGGGAACTGATTGTGGGAGCCCATGAAATTACCCTGGAATCCTACCGCCTGTTT TTGGACCAGTGGGCACGCCTCACTCCGGAGCTGAGGGAGGAATATTCCCACCCGGACCAGCCGGACAAGAGGACTGCCTC CCATATTCCCCAGGACTGGGAGGCTATGTGGAAGGCGGCTTCCACTCCGGGAGGCAAATGGAAAGGCAGGAAAATAACAC CCCGCTCTCCCGTCGTCAACGTCACTTTCTGGGATGCCTGGGCGTATGCGAGCTGGAAGCCCGTGGCCCCCGGAGAACCG CGCTACCGCCTGCCCGAGCGCGGGGAGTGGATGGCTCTGGGGAATATGCTGGAAACGGGTGAGAAGGGGGACAGGACGCT GGTGATTGACAGATACAGCAATGATCATGATTTAAAGACCGGCGTGTGCGGCATGGCTTCCGGCGTGATGGAATGGACTT CTTCCATGGAAAAGGATCCTGCGCGCGTGAAGGAGCCTCCGGGGCCGGTGGCCTGCGGCGGAGACTGGAGGCAGCCCGGC ATCTCCAACCGGGTGGAATACCTGCGCTCCCGCGGTGAAAGCCGGGACAACCTGGGATTCAGAATCGTGCGGAATGTCCT CTGA
Upstream 100 bases:
>100_bases GCCCGAGATTTATGACGGCGGTTTGCTTCCTCCTGTAGAGGCGGCTCCGGTTTCTGAGTCTTATGAATCTCTTTTGCCTC CCTGATGCCTGATTTGTCCA
Downstream 100 bases:
>100_bases CCCGTTTAACGACAATACTTAACATATCAATACCATGAAACATATCCTTGCAATGCTGCTGGCCCTTCTGGGGGCGTCCG GGGCCCTGGCCCAGATTTAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 507; Mature: 507
Protein sequence:
>507_residues MFDLPHNFGDYTLVAFIGRTRGGILYQAIQQGMDRSVFLELLDPDNPEGVGVEDFLMKARTRAAINAPVLGTVYEASQAQ GYWFVTSEQLGGSSLQSMLDRGQTLSMKDLLKVIETVGNVCGRYERLRTAFNIMEPRHIFLDDKSAVRLMNTAVPGDFHE ETSRDQMKRLGIDLPPLVTPDVPGTTRMRTLLEWMREGQNGKPMQWDQVMELVAAVREQLGLSPRVTTHRYTVPVESRRK AGKKLLWAGMGLLGVGIAAAAVLLLFPREKETVSRPHVPAPKHYPDFSSSDHTEVRVTLPGGGELIVGAHEITLESYRLF LDQWARLTPELREEYSHPDQPDKRTASHIPQDWEAMWKAASTPGGKWKGRKITPRSPVVNVTFWDAWAYASWKPVAPGEP RYRLPERGEWMALGNMLETGEKGDRTLVIDRYSNDHDLKTGVCGMASGVMEWTSSMEKDPARVKEPPGPVACGGDWRQPG ISNRVEYLRSRGESRDNLGFRIVRNVL
Sequences:
>Translated_507_residues MFDLPHNFGDYTLVAFIGRTRGGILYQAIQQGMDRSVFLELLDPDNPEGVGVEDFLMKARTRAAINAPVLGTVYEASQAQ GYWFVTSEQLGGSSLQSMLDRGQTLSMKDLLKVIETVGNVCGRYERLRTAFNIMEPRHIFLDDKSAVRLMNTAVPGDFHE ETSRDQMKRLGIDLPPLVTPDVPGTTRMRTLLEWMREGQNGKPMQWDQVMELVAAVREQLGLSPRVTTHRYTVPVESRRK AGKKLLWAGMGLLGVGIAAAAVLLLFPREKETVSRPHVPAPKHYPDFSSSDHTEVRVTLPGGGELIVGAHEITLESYRLF LDQWARLTPELREEYSHPDQPDKRTASHIPQDWEAMWKAASTPGGKWKGRKITPRSPVVNVTFWDAWAYASWKPVAPGEP RYRLPERGEWMALGNMLETGEKGDRTLVIDRYSNDHDLKTGVCGMASGVMEWTSSMEKDPARVKEPPGPVACGGDWRQPG ISNRVEYLRSRGESRDNLGFRIVRNVL >Mature_507_residues MFDLPHNFGDYTLVAFIGRTRGGILYQAIQQGMDRSVFLELLDPDNPEGVGVEDFLMKARTRAAINAPVLGTVYEASQAQ GYWFVTSEQLGGSSLQSMLDRGQTLSMKDLLKVIETVGNVCGRYERLRTAFNIMEPRHIFLDDKSAVRLMNTAVPGDFHE ETSRDQMKRLGIDLPPLVTPDVPGTTRMRTLLEWMREGQNGKPMQWDQVMELVAAVREQLGLSPRVTTHRYTVPVESRRK AGKKLLWAGMGLLGVGIAAAAVLLLFPREKETVSRPHVPAPKHYPDFSSSDHTEVRVTLPGGGELIVGAHEITLESYRLF LDQWARLTPELREEYSHPDQPDKRTASHIPQDWEAMWKAASTPGGKWKGRKITPRSPVVNVTFWDAWAYASWKPVAPGEP RYRLPERGEWMALGNMLETGEKGDRTLVIDRYSNDHDLKTGVCGMASGVMEWTSSMEKDPARVKEPPGPVACGGDWRQPG ISNRVEYLRSRGESRDNLGFRIVRNVL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56951; Mature: 56951
Theoretical pI: Translated: 7.73; Mature: 7.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFDLPHNFGDYTLVAFIGRTRGGILYQAIQQGMDRSVFLELLDPDNPEGVGVEDFLMKAR CCCCCCCCCCEEEEEEHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHH TRAAINAPVLGTVYEASQAQGYWFVTSEQLGGSSLQSMLDRGQTLSMKDLLKVIETVGNV HHHHCCCCCEEHHHHHCCCCCEEEEECHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH CGRYERLRTAFNIMEPRHIFLDDKSAVRLMNTAVPGDFHEETSRDQMKRLGIDLPPLVTP HHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCC DVPGTTRMRTLLEWMREGQNGKPMQWDQVMELVAAVREQLGLSPRVTTHRYTVPVESRRK CCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHH AGKKLLWAGMGLLGVGIAAAAVLLLFPREKETVSRPHVPAPKHYPDFSSSDHTEVRVTLP HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEC GGGELIVGAHEITLESYRLFLDQWARLTPELREEYSHPDQPDKRTASHIPQDWEAMWKAA CCCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHC STPGGKWKGRKITPRSPVVNVTFWDAWAYASWKPVAPGEPRYRLPERGEWMALGNMLETG CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC EKGDRTLVIDRYSNDHDLKTGVCGMASGVMEWTSSMEKDPARVKEPPGPVACGGDWRQPG CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEECCCCCCCCC ISNRVEYLRSRGESRDNLGFRIVRNVL HHHHHHHHHHCCCCCCCCHHHHHHHCC >Mature Secondary Structure MFDLPHNFGDYTLVAFIGRTRGGILYQAIQQGMDRSVFLELLDPDNPEGVGVEDFLMKAR CCCCCCCCCCEEEEEEHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHH TRAAINAPVLGTVYEASQAQGYWFVTSEQLGGSSLQSMLDRGQTLSMKDLLKVIETVGNV HHHHCCCCCEEHHHHHCCCCCEEEEECHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH CGRYERLRTAFNIMEPRHIFLDDKSAVRLMNTAVPGDFHEETSRDQMKRLGIDLPPLVTP HHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCC DVPGTTRMRTLLEWMREGQNGKPMQWDQVMELVAAVREQLGLSPRVTTHRYTVPVESRRK CCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHH AGKKLLWAGMGLLGVGIAAAAVLLLFPREKETVSRPHVPAPKHYPDFSSSDHTEVRVTLP HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEC GGGELIVGAHEITLESYRLFLDQWARLTPELREEYSHPDQPDKRTASHIPQDWEAMWKAA CCCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHC STPGGKWKGRKITPRSPVVNVTFWDAWAYASWKPVAPGEPRYRLPERGEWMALGNMLETG CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC EKGDRTLVIDRYSNDHDLKTGVCGMASGVMEWTSSMEKDPARVKEPPGPVACGGDWRQPG CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEECCCCCCCCC ISNRVEYLRSRGESRDNLGFRIVRNVL HHHHHHHHHHCCCCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA