Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736274
Identifier: 187736274
GI number: 187736274
Start: 2174281
End: 2175492
Strand: Direct
Name: 187736274
Synonym: Amuc_1787
Alternate gene names: NA
Gene position: 2174281-2175492 (Clockwise)
Preceding gene: 187736273
Following gene: 187736275
Centisome position: 81.61
GC content: 56.11
Gene sequence:
>1212_bases ATGAGCGAATCCCTTCCACCGGAAAAGGGCGCCAATGACCGTGCGTTCGGCGTCGCCTGCTGGACGCTGGGTGGGCTGGC GTTTGTTCTGTTGCTGATGGTGGGCGTTTCTTTCAGCCTGTCTGTCCGTACCGTGGTGGTGGAAAAAGTGGTGGAGAAGC CTGTTCCCGTTCCGGCACGGGAGAAGCCGGAGCGTCCGGCCGGAGTCGTTGAGGATGGGGCGGCAGAGGAGACAGTGCAT ATGGCGGATGTTCCGGCATCCCCTTCTGAAAAGCCCCGTTCTGTGGAAGAAATGCTCCGGGAAGCCGATTTATCAGATCC GGCTGCCGATTCTGTACCGGTGGCCGCGGCCGTTGCGGGAGGGGGGGATTCCGCTAGCGGAGCATCCCTTCCTGCTGAGA ATCCGGACGAGGTTATGCCCCCCATGACGGAGGAAGTGGCGGAGCTTGTCAAGGCGGCTCGTTACGCCCAGATTGAAGGT GACCTCAAAGTAGCGGTCGTGAAGCTGGAGCAGGCCATGAGGCTGGAACCGGATAATCCGGTGGTGCTTTATTATTATGG ACTTACCTATGAATGGCTGAGGAATGCGGATAAGTCACGGGAGTTTTTTCTGAAAGTATATACCCAGCGGGAGAAGGCGG GGAAATATTTTGCGCGTGCGGCGCGGCACCTTCAGGCCGGCTTTTCCAGCCCGGCGGATTTGCGGGGGGATATGTCCTTC GGCACTATTCTGGAATACCGGGATCCGGAATGCCCCGCCGGGGAGCGCGTCAAGCTGATGGTTCCTATTCTGATGAAGGA TGGCCTGAATGTCAGGCCGGAGGATCTGCGCGTCATTGTCCAGTTTTTTGACAAAGTCAATGGGAAGAAAGTGGAAAAGA CGCATGCGCCCGAACCTTCTTCCCGGTGCGTTACGGAACCCGCGGATTGGGCGGACGGTGAGGAAATCATGGAAATAACC TACTACATGCCTCCCCTGACGGAAGAAGAGATGATTGCTTATGGAAGCCTGAAATATTACGGATATACCGCTAAATTGTA TTACAAGGGGGAACCGATGGATTGCCATGCTTCCCCTCCCGTGCTATTTTTACTGGAACAGATGAACCAGAGTTCCCCTT CCGGACTGCCCGAGATTTATGACGGCGGTTTGCTTCCTCCTGTAGAGGCGGCTCCGGTTTCTGAGTCTTATGAATCTCTT TTGCCTCCCTGA
Upstream 100 bases:
>100_bases AGGCTCTTCTGTCTCTCTACAGAGGAGAAATAGTGGATTATGAAGAAATTCCTGATGCCGGCGGGCCGCCTGCCCGGCAG GAGGACGAGGAACGTGCCGT
Downstream 100 bases:
>100_bases TGCCTGATTTGTCCAATGTTTGATCTTCCCCACAACTTTGGCGATTACACGCTGGTGGCATTTATTGGCCGCACGCGCGG AGGAATTCTTTATCAGGCCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 403; Mature: 402
Protein sequence:
>403_residues MSESLPPEKGANDRAFGVACWTLGGLAFVLLLMVGVSFSLSVRTVVVEKVVEKPVPVPAREKPERPAGVVEDGAAEETVH MADVPASPSEKPRSVEEMLREADLSDPAADSVPVAAAVAGGGDSASGASLPAENPDEVMPPMTEEVAELVKAARYAQIEG DLKVAVVKLEQAMRLEPDNPVVLYYYGLTYEWLRNADKSREFFLKVYTQREKAGKYFARAARHLQAGFSSPADLRGDMSF GTILEYRDPECPAGERVKLMVPILMKDGLNVRPEDLRVIVQFFDKVNGKKVEKTHAPEPSSRCVTEPADWADGEEIMEIT YYMPPLTEEEMIAYGSLKYYGYTAKLYYKGEPMDCHASPPVLFLLEQMNQSSPSGLPEIYDGGLLPPVEAAPVSESYESL LPP
Sequences:
>Translated_403_residues MSESLPPEKGANDRAFGVACWTLGGLAFVLLLMVGVSFSLSVRTVVVEKVVEKPVPVPAREKPERPAGVVEDGAAEETVH MADVPASPSEKPRSVEEMLREADLSDPAADSVPVAAAVAGGGDSASGASLPAENPDEVMPPMTEEVAELVKAARYAQIEG DLKVAVVKLEQAMRLEPDNPVVLYYYGLTYEWLRNADKSREFFLKVYTQREKAGKYFARAARHLQAGFSSPADLRGDMSF GTILEYRDPECPAGERVKLMVPILMKDGLNVRPEDLRVIVQFFDKVNGKKVEKTHAPEPSSRCVTEPADWADGEEIMEIT YYMPPLTEEEMIAYGSLKYYGYTAKLYYKGEPMDCHASPPVLFLLEQMNQSSPSGLPEIYDGGLLPPVEAAPVSESYESL LPP >Mature_402_residues SESLPPEKGANDRAFGVACWTLGGLAFVLLLMVGVSFSLSVRTVVVEKVVEKPVPVPAREKPERPAGVVEDGAAEETVHM ADVPASPSEKPRSVEEMLREADLSDPAADSVPVAAAVAGGGDSASGASLPAENPDEVMPPMTEEVAELVKAARYAQIEGD LKVAVVKLEQAMRLEPDNPVVLYYYGLTYEWLRNADKSREFFLKVYTQREKAGKYFARAARHLQAGFSSPADLRGDMSFG TILEYRDPECPAGERVKLMVPILMKDGLNVRPEDLRVIVQFFDKVNGKKVEKTHAPEPSSRCVTEPADWADGEEIMEITY YMPPLTEEEMIAYGSLKYYGYTAKLYYKGEPMDCHASPPVLFLLEQMNQSSPSGLPEIYDGGLLPPVEAAPVSESYESLL PP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44111; Mature: 43979
Theoretical pI: Translated: 4.38; Mature: 4.38
Prosite motif: PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSESLPPEKGANDRAFGVACWTLGGLAFVLLLMVGVSFSLSVRTVVVEKVVEKPVPVPAR CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC EKPERPAGVVEDGAAEETVHMADVPASPSEKPRSVEEMLREADLSDPAADSVPVAAAVAG CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEC GGDSASGASLPAENPDEVMPPMTEEVAELVKAARYAQIEGDLKVAVVKLEQAMRLEPDNP CCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCCCC VVLYYYGLTYEWLRNADKSREFFLKVYTQREKAGKYFARAARHLQAGFSSPADLRGDMSF EEEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC GTILEYRDPECPAGERVKLMVPILMKDGLNVRPEDLRVIVQFFDKVNGKKVEKTHAPEPS CEEEECCCCCCCCCCEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCC SRCVTEPADWADGEEIMEITYYMPPLTEEEMIAYGSLKYYGYTAKLYYKGEPMDCHASPP CCCCCCCCCCCCCHHHEEEEEECCCCCHHHHHHHCCEEEEEEEEEEEECCCCCCCCCCCC VLFLLEQMNQSSPSGLPEIYDGGLLPPVEAAPVSESYESLLPP HHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHCCCC >Mature Secondary Structure SESLPPEKGANDRAFGVACWTLGGLAFVLLLMVGVSFSLSVRTVVVEKVVEKPVPVPAR CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC EKPERPAGVVEDGAAEETVHMADVPASPSEKPRSVEEMLREADLSDPAADSVPVAAAVAG CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEC GGDSASGASLPAENPDEVMPPMTEEVAELVKAARYAQIEGDLKVAVVKLEQAMRLEPDNP CCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCCCC VVLYYYGLTYEWLRNADKSREFFLKVYTQREKAGKYFARAARHLQAGFSSPADLRGDMSF EEEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC GTILEYRDPECPAGERVKLMVPILMKDGLNVRPEDLRVIVQFFDKVNGKKVEKTHAPEPS CEEEECCCCCCCCCCEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCC SRCVTEPADWADGEEIMEITYYMPPLTEEEMIAYGSLKYYGYTAKLYYKGEPMDCHASPP CCCCCCCCCCCCCHHHEEEEEECCCCCHHHHHHHCCEEEEEEEEEEEECCCCCCCCCCCC VLFLLEQMNQSSPSGLPEIYDGGLLPPVEAAPVSESYESLLPP HHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA