Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is yugG [H]
Identifier: 187736257
GI number: 187736257
Start: 2155557
End: 2156042
Strand: Direct
Name: yugG [H]
Synonym: Amuc_1770
Alternate gene names: 187736257
Gene position: 2155557-2156042 (Clockwise)
Preceding gene: 187736255
Following gene: 187736258
Centisome position: 80.91
GC content: 54.73
Gene sequence:
>486_bases ATGTCCTCTGCATCACTTCTACAGTTACTGGCGACTCAAGCCCGCTTGAGCGATGGCGAATTGGCCGAACGTCTTGACAT GACTGAAGAAGCCGTGCGAGCCCAGCGGGAACAGTGGGAGAAGGAAGGCGTCATCCTCGGATACCAGGCCGTGGTGAATG AGGAATATGAACACGACAGCAAGGTGGCGGCCTTCATTGAAGTGAAAATGACGCCTGAACGCGACGGCGGTTTTGACCGC CTGGCCATGCGCATTTCACGGTTCGACGAAGTTTCCTCCTGCTATCTGGCAAGCGGCGGTTTTGACCTGCTGGTGCTGGT GGAAGGAAAAAGCATGCGGGAGATTGCCCGGTTTGTGGCGGAAAAACTCTCTACGCTGGAAGGGGTGTTGTCCACTTCCA CACACTTCCATCTGAAAACCTACAAGAAAAACGGTTGTGTGTTTGAAGCTCCCGTGCAGACAGAACGCCTGGCTGTCGCT CCGTAA
Upstream 100 bases:
>100_bases ACGAACATATTTTATCATTTTGGAAAGAAAGGATGTCAGTCTTGCGTAATATGGTTCTTGACAGGTTCGCCGTAAAAGCG TCTTTTATGCCTGAAATTTT
Downstream 100 bases:
>100_bases TTCTCTGCCGTTAAGAAAGGAATGATCATGAATTGGCAGAACAAAATAGCGGAGCAGGTAAGCTCCATACCCCGTTCCGG CATCCGGGAATTTTTTGACC
Product: AsnC family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 161; Mature: 160
Protein sequence:
>161_residues MSSASLLQLLATQARLSDGELAERLDMTEEAVRAQREQWEKEGVILGYQAVVNEEYEHDSKVAAFIEVKMTPERDGGFDR LAMRISRFDEVSSCYLASGGFDLLVLVEGKSMREIARFVAEKLSTLEGVLSTSTHFHLKTYKKNGCVFEAPVQTERLAVA P
Sequences:
>Translated_161_residues MSSASLLQLLATQARLSDGELAERLDMTEEAVRAQREQWEKEGVILGYQAVVNEEYEHDSKVAAFIEVKMTPERDGGFDR LAMRISRFDEVSSCYLASGGFDLLVLVEGKSMREIARFVAEKLSTLEGVLSTSTHFHLKTYKKNGCVFEAPVQTERLAVA P >Mature_160_residues SSASLLQLLATQARLSDGELAERLDMTEEAVRAQREQWEKEGVILGYQAVVNEEYEHDSKVAAFIEVKMTPERDGGFDRL AMRISRFDEVSSCYLASGGFDLLVLVEGKSMREIARFVAEKLSTLEGVLSTSTHFHLKTYKKNGCVFEAPVQTERLAVAP
Specific function: Mediates A Global Response To Leucine. Exogenous Leucine Affects The Expression Of A Number Of Different Operons; Lrp Mediates This Effect For At Least Some Of These Operons. For Example It Is Regulator Of The Branched-Chain Amino Acid Transport Genes. [
COG id: COG1522
COG function: function code K; Transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1787116, Length=141, Percent_Identity=25.531914893617, Blast_Score=64, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011008 - InterPro: IPR000485 - InterPro: IPR019888 - InterPro: IPR019887 - InterPro: IPR011991 [H]
Pfam domain/function: PF01037 AsnC_trans_reg [H]
EC number: NA
Molecular weight: Translated: 17978; Mature: 17846
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSASLLQLLATQARLSDGELAERLDMTEEAVRAQREQWEKEGVILGYQAVVNEEYEHDS CCHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHHHCCEEEEHHHHHCCCCCCCC KVAAFIEVKMTPERDGGFDRLAMRISRFDEVSSCYLASGGFDLLVLVEGKSMREIARFVA CEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHEEECCCCEEEEEECCCCHHHHHHHHH EKLSTLEGVLSTSTHFHLKTYKKNGCVFEAPVQTERLAVAP HHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCCCEEECCC >Mature Secondary Structure SSASLLQLLATQARLSDGELAERLDMTEEAVRAQREQWEKEGVILGYQAVVNEEYEHDS CHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHHHCCEEEEHHHHHCCCCCCCC KVAAFIEVKMTPERDGGFDRLAMRISRFDEVSSCYLASGGFDLLVLVEGKSMREIARFVA CEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHEEECCCCEEEEEECCCCHHHHHHHHH EKLSTLEGVLSTSTHFHLKTYKKNGCVFEAPVQTERLAVAP HHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9274030; 9384377 [H]