Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

Click here to switch to the map view.

The map label for this gene is yugH [H]

Identifier: 187736258

GI number: 187736258

Start: 2156064

End: 2157239

Strand: Direct

Name: yugH [H]

Synonym: Amuc_1771

Alternate gene names: 187736258

Gene position: 2156064-2157239 (Clockwise)

Preceding gene: 187736257

Following gene: 187736259

Centisome position: 80.93

GC content: 56.46

Gene sequence:

>1176_bases
ATGATCATGAATTGGCAGAACAAAATAGCGGAGCAGGTAAGCTCCATACCCCGTTCCGGCATCCGGGAATTTTTTGACCT
GGTCACGGGACGCACGGATATCATCTCCCTGGGCGTAGGGGAGCCGGACTTCGTGACGCCGTGGAATATACGGGAAGCGG
CCATTTACTCCCTGGAAAAGGGGCACACCTCCTACACTTCCAACTATGGGTTGGAATCCCTGCGCCGTTCCATCGTCAAA
TACGTGGACGGATTCTTCCATGTCAACTACGACCCCCTGCGCGAAGTGCTGGTGACGGTAGGCGTAAGCGAAGCCATAGA
TCTCGCTCTCCGTGCCATTCTGAATCCGGGGGACGAGGTTCTTTATCACGAACCCTGTTATGTCTCCTATGCCCCCAGCG
TCAATATGGCCTACGGCGTAGCTACCGCCGTGCCTACAAGCAAAAGGGATCTTTTCGCCCTGAACCCGGAGTTGCTGGAA
GCGTCCATTACACCGCGGACCAAGGTGCTGATGCTCAACTTCCCGACGAATCCGACCGGAGCGGTGGCCCCTGTGGAAAC
CCTTCAGGAAATTGCCCGCATTTGCATCAGGCACGACCTCATCGTGCTGACGGATGAAATTTACAGTGAACTGCGTTATG
ACGGCAAGCCGCATGTTTCCATAGCTTCTCTGCCGGGGATGAAGGAACGCACGCTCCTGCTGCACGGATTTTCCAAGGCA
TTCGCCATGACGGGGTTCCGGCTGGGGTATGCCTGCGGTCCGGAACCGCTTATTTCCGCCATGATGAAAATTCATCAGTA
TTCCATGCTCTGCGCCCCCATTACTTCCCAGGAGGCGGCCATTGAAGCATTGGAAAACGGGACATCCGCCATGTTGAAGA
TGCGGGAAAGCTACCGCCAGCGCCGGGATTACCTGGTGAAGCGCCTTAATGAAATCGGCATGGACTGCCACCTGCCCGGC
GGCGCGTTCTATGTCTTCCCGGACATTTCCAGATTTGGCTTGACCAGCAAGGAGTTTGCCACCCGGCTGCTGATGGAAAA
GCAGGTGGCCGCCGTACCGGGGACCGCCTTCGGCGCAAGCGGAGAAGGCTTCCTGCGCTGTTGCTATGCGACCGCCTTTG
ACCAGATCAAGGAGGCCTGCAACCGCATGGAACATTTCGTGGAAACTCTTTCCTGA

Upstream 100 bases:

>100_bases
CCATCTGAAAACCTACAAGAAAAACGGTTGTGTGTTTGAAGCTCCCGTGCAGACAGAACGCCTGGCTGTCGCTCCGTAAT
TCTCTGCCGTTAAGAAAGGA

Downstream 100 bases:

>100_bases
CCCGGCAGTGTTCATGAACTCCGTGACGGAGGCGCTGAAAACAAAGGCGTATGTGGTGCCGTTTGCGGTATTCATGGGCT
TTACCCTGGTGTGGCAGTTT

Product: aminotransferase class I and II

Products: N-succinyl-2-L-amino-6-oxoheptanedioate; L-glutamate

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MIMNWQNKIAEQVSSIPRSGIREFFDLVTGRTDIISLGVGEPDFVTPWNIREAAIYSLEKGHTSYTSNYGLESLRRSIVK
YVDGFFHVNYDPLREVLVTVGVSEAIDLALRAILNPGDEVLYHEPCYVSYAPSVNMAYGVATAVPTSKRDLFALNPELLE
ASITPRTKVLMLNFPTNPTGAVAPVETLQEIARICIRHDLIVLTDEIYSELRYDGKPHVSIASLPGMKERTLLLHGFSKA
FAMTGFRLGYACGPEPLISAMMKIHQYSMLCAPITSQEAAIEALENGTSAMLKMRESYRQRRDYLVKRLNEIGMDCHLPG
GAFYVFPDISRFGLTSKEFATRLLMEKQVAAVPGTAFGASGEGFLRCCYATAFDQIKEACNRMEHFVETLS

Sequences:

>Translated_391_residues
MIMNWQNKIAEQVSSIPRSGIREFFDLVTGRTDIISLGVGEPDFVTPWNIREAAIYSLEKGHTSYTSNYGLESLRRSIVK
YVDGFFHVNYDPLREVLVTVGVSEAIDLALRAILNPGDEVLYHEPCYVSYAPSVNMAYGVATAVPTSKRDLFALNPELLE
ASITPRTKVLMLNFPTNPTGAVAPVETLQEIARICIRHDLIVLTDEIYSELRYDGKPHVSIASLPGMKERTLLLHGFSKA
FAMTGFRLGYACGPEPLISAMMKIHQYSMLCAPITSQEAAIEALENGTSAMLKMRESYRQRRDYLVKRLNEIGMDCHLPG
GAFYVFPDISRFGLTSKEFATRLLMEKQVAAVPGTAFGASGEGFLRCCYATAFDQIKEACNRMEHFVETLS
>Mature_391_residues
MIMNWQNKIAEQVSSIPRSGIREFFDLVTGRTDIISLGVGEPDFVTPWNIREAAIYSLEKGHTSYTSNYGLESLRRSIVK
YVDGFFHVNYDPLREVLVTVGVSEAIDLALRAILNPGDEVLYHEPCYVSYAPSVNMAYGVATAVPTSKRDLFALNPELLE
ASITPRTKVLMLNFPTNPTGAVAPVETLQEIARICIRHDLIVLTDEIYSELRYDGKPHVSIASLPGMKERTLLLHGFSKA
FAMTGFRLGYACGPEPLISAMMKIHQYSMLCAPITSQEAAIEALENGTSAMLKMRESYRQRRDYLVKRLNEIGMDCHLPG
GAFYVFPDISRFGLTSKEFATRLLMEKQVAAVPGTAFGASGEGFLRCCYATAFDQIKEACNRMEHFVETLS

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI95147551, Length=379, Percent_Identity=31.3984168865435, Blast_Score=193, Evalue=2e-49,
Organism=Homo sapiens, GI169881279, Length=379, Percent_Identity=31.3984168865435, Blast_Score=193, Evalue=2e-49,
Organism=Homo sapiens, GI56713256, Length=381, Percent_Identity=28.8713910761155, Blast_Score=178, Evalue=9e-45,
Organism=Homo sapiens, GI56713254, Length=381, Percent_Identity=28.8713910761155, Blast_Score=178, Evalue=9e-45,
Organism=Homo sapiens, GI169881281, Length=390, Percent_Identity=26.6666666666667, Blast_Score=152, Evalue=7e-37,
Organism=Homo sapiens, GI4507369, Length=384, Percent_Identity=26.0416666666667, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI7705897, Length=419, Percent_Identity=24.8210023866348, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI33469970, Length=419, Percent_Identity=24.8210023866348, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI187936925, Length=396, Percent_Identity=23.4848484848485, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI14211921, Length=396, Percent_Identity=23.4848484848485, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1788722, Length=350, Percent_Identity=31.4285714285714, Blast_Score=178, Evalue=6e-46,
Organism=Escherichia coli, GI1786816, Length=378, Percent_Identity=27.2486772486773, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1788627, Length=371, Percent_Identity=30.188679245283, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI1787909, Length=347, Percent_Identity=23.342939481268, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788332, Length=225, Percent_Identity=30.6666666666667, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790797, Length=390, Percent_Identity=24.3589743589744, Blast_Score=73, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71994476, Length=382, Percent_Identity=32.4607329842932, Blast_Score=169, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI71994472, Length=382, Percent_Identity=32.4607329842932, Blast_Score=169, Evalue=3e-42,
Organism=Caenorhabditis elegans, GI17567369, Length=409, Percent_Identity=29.0953545232274, Blast_Score=149, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI17567663, Length=389, Percent_Identity=25.1928020565553, Blast_Score=94, Evalue=9e-20,
Organism=Saccharomyces cerevisiae, GI6322401, Length=389, Percent_Identity=26.7352185089974, Blast_Score=125, Evalue=2e-29,
Organism=Saccharomyces cerevisiae, GI6323118, Length=360, Percent_Identity=24.7222222222222, Blast_Score=80, Evalue=5e-16,
Organism=Saccharomyces cerevisiae, GI6320317, Length=229, Percent_Identity=28.3842794759825, Blast_Score=73, Evalue=8e-14,
Organism=Drosophila melanogaster, GI28573069, Length=387, Percent_Identity=28.4237726098191, Blast_Score=171, Evalue=7e-43,
Organism=Drosophila melanogaster, GI24646114, Length=387, Percent_Identity=28.4237726098191, Blast_Score=171, Evalue=7e-43,
Organism=Drosophila melanogaster, GI28573067, Length=387, Percent_Identity=28.4237726098191, Blast_Score=171, Evalue=7e-43,
Organism=Drosophila melanogaster, GI28573065, Length=387, Percent_Identity=28.4237726098191, Blast_Score=171, Evalue=7e-43,
Organism=Drosophila melanogaster, GI18859735, Length=389, Percent_Identity=26.7352185089974, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24641770, Length=387, Percent_Identity=26.3565891472868, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24641760, Length=387, Percent_Identity=26.3565891472868, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24641768, Length=387, Percent_Identity=26.3565891472868, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24641766, Length=387, Percent_Identity=26.3565891472868, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24641764, Length=387, Percent_Identity=26.3565891472868, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI45551451, Length=387, Percent_Identity=26.3565891472868, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: 2.6.1.17

Molecular weight: Translated: 43555; Mature: 43555

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS00105 AA_TRANSFER_CLASS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMNWQNKIAEQVSSIPRSGIREFFDLVTGRTDIISLGVGEPDFVTPWNIREAAIYSLEK
CCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHC
GHTSYTSNYGLESLRRSIVKYVDGFFHVNYDPLREVLVTVGVSEAIDLALRAILNPGDEV
CCCCCCCCCCHHHHHHHHHHHHHHHEECCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCE
LYHEPCYVSYAPSVNMAYGVATAVPTSKRDLFALNPELLEASITPRTKVLMLNFPTNPTG
EEECCCEEEECCCCCHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCEEEEEEECCCCCCC
AVAPVETLQEIARICIRHDLIVLTDEIYSELRYDGKPHVSIASLPGMKERTLLLHGFSKA
CCCHHHHHHHHHHHHHHCCHHEEEHHHHHHHCCCCCCCEEEECCCCCCHHEEEEHHHHHH
FAMTGFRLGYACGPEPLISAMMKIHQYSMLCAPITSQEAAIEALENGTSAMLKMRESYRQ
HHHHCHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHH
RRDYLVKRLNEIGMDCHLPGGAFYVFPDISRFGLTSKEFATRLLMEKQVAAVPGTAFGAS
HHHHHHHHHHHCCCEEECCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCC
GEGFLRCCYATAFDQIKEACNRMEHFVETLS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIMNWQNKIAEQVSSIPRSGIREFFDLVTGRTDIISLGVGEPDFVTPWNIREAAIYSLEK
CCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHC
GHTSYTSNYGLESLRRSIVKYVDGFFHVNYDPLREVLVTVGVSEAIDLALRAILNPGDEV
CCCCCCCCCCHHHHHHHHHHHHHHHEECCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCE
LYHEPCYVSYAPSVNMAYGVATAVPTSKRDLFALNPELLEASITPRTKVLMLNFPTNPTG
EEECCCEEEECCCCCHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCEEEEEEECCCCCCC
AVAPVETLQEIARICIRHDLIVLTDEIYSELRYDGKPHVSIASLPGMKERTLLLHGFSKA
CCCHHHHHHHHHHHHHHCCHHEEEHHHHHHHCCCCCCCEEEECCCCCCHHEEEEHHHHHH
FAMTGFRLGYACGPEPLISAMMKIHQYSMLCAPITSQEAAIEALENGTSAMLKMRESYRQ
HHHHCHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHH
RRDYLVKRLNEIGMDCHLPGGAFYVFPDISRFGLTSKEFATRLLMEKQVAAVPGTAFGAS
HHHHHHHHHHHCCCEEECCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCC
GEGFLRCCYATAFDQIKEACNRMEHFVETLS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: N-succinyl-L-2,6-diaminoheptanedioate; 2-oxoglutarate

Specific reaction: N-succinyl-L-2,6-diaminoheptanedioate + 2-oxoglutarate = N-succinyl-2-L-amino-6-oxoheptanedioate + L-glutamate

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]