Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is yugH [H]
Identifier: 187736258
GI number: 187736258
Start: 2156064
End: 2157239
Strand: Direct
Name: yugH [H]
Synonym: Amuc_1771
Alternate gene names: 187736258
Gene position: 2156064-2157239 (Clockwise)
Preceding gene: 187736257
Following gene: 187736259
Centisome position: 80.93
GC content: 56.46
Gene sequence:
>1176_bases ATGATCATGAATTGGCAGAACAAAATAGCGGAGCAGGTAAGCTCCATACCCCGTTCCGGCATCCGGGAATTTTTTGACCT GGTCACGGGACGCACGGATATCATCTCCCTGGGCGTAGGGGAGCCGGACTTCGTGACGCCGTGGAATATACGGGAAGCGG CCATTTACTCCCTGGAAAAGGGGCACACCTCCTACACTTCCAACTATGGGTTGGAATCCCTGCGCCGTTCCATCGTCAAA TACGTGGACGGATTCTTCCATGTCAACTACGACCCCCTGCGCGAAGTGCTGGTGACGGTAGGCGTAAGCGAAGCCATAGA TCTCGCTCTCCGTGCCATTCTGAATCCGGGGGACGAGGTTCTTTATCACGAACCCTGTTATGTCTCCTATGCCCCCAGCG TCAATATGGCCTACGGCGTAGCTACCGCCGTGCCTACAAGCAAAAGGGATCTTTTCGCCCTGAACCCGGAGTTGCTGGAA GCGTCCATTACACCGCGGACCAAGGTGCTGATGCTCAACTTCCCGACGAATCCGACCGGAGCGGTGGCCCCTGTGGAAAC CCTTCAGGAAATTGCCCGCATTTGCATCAGGCACGACCTCATCGTGCTGACGGATGAAATTTACAGTGAACTGCGTTATG ACGGCAAGCCGCATGTTTCCATAGCTTCTCTGCCGGGGATGAAGGAACGCACGCTCCTGCTGCACGGATTTTCCAAGGCA TTCGCCATGACGGGGTTCCGGCTGGGGTATGCCTGCGGTCCGGAACCGCTTATTTCCGCCATGATGAAAATTCATCAGTA TTCCATGCTCTGCGCCCCCATTACTTCCCAGGAGGCGGCCATTGAAGCATTGGAAAACGGGACATCCGCCATGTTGAAGA TGCGGGAAAGCTACCGCCAGCGCCGGGATTACCTGGTGAAGCGCCTTAATGAAATCGGCATGGACTGCCACCTGCCCGGC GGCGCGTTCTATGTCTTCCCGGACATTTCCAGATTTGGCTTGACCAGCAAGGAGTTTGCCACCCGGCTGCTGATGGAAAA GCAGGTGGCCGCCGTACCGGGGACCGCCTTCGGCGCAAGCGGAGAAGGCTTCCTGCGCTGTTGCTATGCGACCGCCTTTG ACCAGATCAAGGAGGCCTGCAACCGCATGGAACATTTCGTGGAAACTCTTTCCTGA
Upstream 100 bases:
>100_bases CCATCTGAAAACCTACAAGAAAAACGGTTGTGTGTTTGAAGCTCCCGTGCAGACAGAACGCCTGGCTGTCGCTCCGTAAT TCTCTGCCGTTAAGAAAGGA
Downstream 100 bases:
>100_bases CCCGGCAGTGTTCATGAACTCCGTGACGGAGGCGCTGAAAACAAAGGCGTATGTGGTGCCGTTTGCGGTATTCATGGGCT TTACCCTGGTGTGGCAGTTT
Product: aminotransferase class I and II
Products: N-succinyl-2-L-amino-6-oxoheptanedioate; L-glutamate
Alternate protein names: NA
Number of amino acids: Translated: 391; Mature: 391
Protein sequence:
>391_residues MIMNWQNKIAEQVSSIPRSGIREFFDLVTGRTDIISLGVGEPDFVTPWNIREAAIYSLEKGHTSYTSNYGLESLRRSIVK YVDGFFHVNYDPLREVLVTVGVSEAIDLALRAILNPGDEVLYHEPCYVSYAPSVNMAYGVATAVPTSKRDLFALNPELLE ASITPRTKVLMLNFPTNPTGAVAPVETLQEIARICIRHDLIVLTDEIYSELRYDGKPHVSIASLPGMKERTLLLHGFSKA FAMTGFRLGYACGPEPLISAMMKIHQYSMLCAPITSQEAAIEALENGTSAMLKMRESYRQRRDYLVKRLNEIGMDCHLPG GAFYVFPDISRFGLTSKEFATRLLMEKQVAAVPGTAFGASGEGFLRCCYATAFDQIKEACNRMEHFVETLS
Sequences:
>Translated_391_residues MIMNWQNKIAEQVSSIPRSGIREFFDLVTGRTDIISLGVGEPDFVTPWNIREAAIYSLEKGHTSYTSNYGLESLRRSIVK YVDGFFHVNYDPLREVLVTVGVSEAIDLALRAILNPGDEVLYHEPCYVSYAPSVNMAYGVATAVPTSKRDLFALNPELLE ASITPRTKVLMLNFPTNPTGAVAPVETLQEIARICIRHDLIVLTDEIYSELRYDGKPHVSIASLPGMKERTLLLHGFSKA FAMTGFRLGYACGPEPLISAMMKIHQYSMLCAPITSQEAAIEALENGTSAMLKMRESYRQRRDYLVKRLNEIGMDCHLPG GAFYVFPDISRFGLTSKEFATRLLMEKQVAAVPGTAFGASGEGFLRCCYATAFDQIKEACNRMEHFVETLS >Mature_391_residues MIMNWQNKIAEQVSSIPRSGIREFFDLVTGRTDIISLGVGEPDFVTPWNIREAAIYSLEKGHTSYTSNYGLESLRRSIVK YVDGFFHVNYDPLREVLVTVGVSEAIDLALRAILNPGDEVLYHEPCYVSYAPSVNMAYGVATAVPTSKRDLFALNPELLE ASITPRTKVLMLNFPTNPTGAVAPVETLQEIARICIRHDLIVLTDEIYSELRYDGKPHVSIASLPGMKERTLLLHGFSKA FAMTGFRLGYACGPEPLISAMMKIHQYSMLCAPITSQEAAIEALENGTSAMLKMRESYRQRRDYLVKRLNEIGMDCHLPG GAFYVFPDISRFGLTSKEFATRLLMEKQVAAVPGTAFGASGEGFLRCCYATAFDQIKEACNRMEHFVETLS
Specific function: Unknown
COG id: COG0436
COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI95147551, Length=379, Percent_Identity=31.3984168865435, Blast_Score=193, Evalue=2e-49, Organism=Homo sapiens, GI169881279, Length=379, Percent_Identity=31.3984168865435, Blast_Score=193, Evalue=2e-49, Organism=Homo sapiens, GI56713256, Length=381, Percent_Identity=28.8713910761155, Blast_Score=178, Evalue=9e-45, Organism=Homo sapiens, GI56713254, Length=381, Percent_Identity=28.8713910761155, Blast_Score=178, Evalue=9e-45, Organism=Homo sapiens, GI169881281, Length=390, Percent_Identity=26.6666666666667, Blast_Score=152, Evalue=7e-37, Organism=Homo sapiens, GI4507369, Length=384, Percent_Identity=26.0416666666667, Blast_Score=98, Evalue=1e-20, Organism=Homo sapiens, GI7705897, Length=419, Percent_Identity=24.8210023866348, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI33469970, Length=419, Percent_Identity=24.8210023866348, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI187936925, Length=396, Percent_Identity=23.4848484848485, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI14211921, Length=396, Percent_Identity=23.4848484848485, Blast_Score=67, Evalue=3e-11, Organism=Escherichia coli, GI1788722, Length=350, Percent_Identity=31.4285714285714, Blast_Score=178, Evalue=6e-46, Organism=Escherichia coli, GI1786816, Length=378, Percent_Identity=27.2486772486773, Blast_Score=172, Evalue=3e-44, Organism=Escherichia coli, GI1788627, Length=371, Percent_Identity=30.188679245283, Blast_Score=139, Evalue=4e-34, Organism=Escherichia coli, GI1787909, Length=347, Percent_Identity=23.342939481268, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788332, Length=225, Percent_Identity=30.6666666666667, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1790797, Length=390, Percent_Identity=24.3589743589744, Blast_Score=73, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71994476, Length=382, Percent_Identity=32.4607329842932, Blast_Score=169, Evalue=2e-42, Organism=Caenorhabditis elegans, GI71994472, Length=382, Percent_Identity=32.4607329842932, Blast_Score=169, Evalue=3e-42, Organism=Caenorhabditis elegans, GI17567369, Length=409, Percent_Identity=29.0953545232274, Blast_Score=149, Evalue=2e-36, Organism=Caenorhabditis elegans, GI17567663, Length=389, Percent_Identity=25.1928020565553, Blast_Score=94, Evalue=9e-20, Organism=Saccharomyces cerevisiae, GI6322401, Length=389, Percent_Identity=26.7352185089974, Blast_Score=125, Evalue=2e-29, Organism=Saccharomyces cerevisiae, GI6323118, Length=360, Percent_Identity=24.7222222222222, Blast_Score=80, Evalue=5e-16, Organism=Saccharomyces cerevisiae, GI6320317, Length=229, Percent_Identity=28.3842794759825, Blast_Score=73, Evalue=8e-14, Organism=Drosophila melanogaster, GI28573069, Length=387, Percent_Identity=28.4237726098191, Blast_Score=171, Evalue=7e-43, Organism=Drosophila melanogaster, GI24646114, Length=387, Percent_Identity=28.4237726098191, Blast_Score=171, Evalue=7e-43, Organism=Drosophila melanogaster, GI28573067, Length=387, Percent_Identity=28.4237726098191, Blast_Score=171, Evalue=7e-43, Organism=Drosophila melanogaster, GI28573065, Length=387, Percent_Identity=28.4237726098191, Blast_Score=171, Evalue=7e-43, Organism=Drosophila melanogaster, GI18859735, Length=389, Percent_Identity=26.7352185089974, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI24641770, Length=387, Percent_Identity=26.3565891472868, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24641760, Length=387, Percent_Identity=26.3565891472868, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24641768, Length=387, Percent_Identity=26.3565891472868, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24641766, Length=387, Percent_Identity=26.3565891472868, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24641764, Length=387, Percent_Identity=26.3565891472868, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI45551451, Length=387, Percent_Identity=26.3565891472868, Blast_Score=74, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001176 - InterPro: IPR004839 - InterPro: IPR004838 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: 2.6.1.17
Molecular weight: Translated: 43555; Mature: 43555
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: PS00105 AA_TRANSFER_CLASS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIMNWQNKIAEQVSSIPRSGIREFFDLVTGRTDIISLGVGEPDFVTPWNIREAAIYSLEK CCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHC GHTSYTSNYGLESLRRSIVKYVDGFFHVNYDPLREVLVTVGVSEAIDLALRAILNPGDEV CCCCCCCCCCHHHHHHHHHHHHHHHEECCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCE LYHEPCYVSYAPSVNMAYGVATAVPTSKRDLFALNPELLEASITPRTKVLMLNFPTNPTG EEECCCEEEECCCCCHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCEEEEEEECCCCCCC AVAPVETLQEIARICIRHDLIVLTDEIYSELRYDGKPHVSIASLPGMKERTLLLHGFSKA CCCHHHHHHHHHHHHHHCCHHEEEHHHHHHHCCCCCCCEEEECCCCCCHHEEEEHHHHHH FAMTGFRLGYACGPEPLISAMMKIHQYSMLCAPITSQEAAIEALENGTSAMLKMRESYRQ HHHHCHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHH RRDYLVKRLNEIGMDCHLPGGAFYVFPDISRFGLTSKEFATRLLMEKQVAAVPGTAFGAS HHHHHHHHHHHCCCEEECCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCC GEGFLRCCYATAFDQIKEACNRMEHFVETLS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MIMNWQNKIAEQVSSIPRSGIREFFDLVTGRTDIISLGVGEPDFVTPWNIREAAIYSLEK CCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHC GHTSYTSNYGLESLRRSIVKYVDGFFHVNYDPLREVLVTVGVSEAIDLALRAILNPGDEV CCCCCCCCCCHHHHHHHHHHHHHHHEECCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCE LYHEPCYVSYAPSVNMAYGVATAVPTSKRDLFALNPELLEASITPRTKVLMLNFPTNPTG EEECCCEEEECCCCCHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCEEEEEEECCCCCCC AVAPVETLQEIARICIRHDLIVLTDEIYSELRYDGKPHVSIASLPGMKERTLLLHGFSKA CCCHHHHHHHHHHHHHHCCHHEEEHHHHHHHCCCCCCCEEEECCCCCCHHEEEEHHHHHH FAMTGFRLGYACGPEPLISAMMKIHQYSMLCAPITSQEAAIEALENGTSAMLKMRESYRQ HHHHCHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHH RRDYLVKRLNEIGMDCHLPGGAFYVFPDISRFGLTSKEFATRLLMEKQVAAVPGTAFGAS HHHHHHHHHHHCCCEEECCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCC GEGFLRCCYATAFDQIKEACNRMEHFVETLS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: N-succinyl-L-2,6-diaminoheptanedioate; 2-oxoglutarate
Specific reaction: N-succinyl-L-2,6-diaminoheptanedioate + 2-oxoglutarate = N-succinyl-2-L-amino-6-oxoheptanedioate + L-glutamate
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9274030; 9384377 [H]