Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is dapE [H]
Identifier: 187736246
GI number: 187736246
Start: 2141787
End: 2143184
Strand: Direct
Name: dapE [H]
Synonym: Amuc_1759
Alternate gene names: 187736246
Gene position: 2141787-2143184 (Clockwise)
Preceding gene: 187736238
Following gene: 187736247
Centisome position: 80.39
GC content: 57.8
Gene sequence:
>1398_bases ATGGAATGCCACACTTTACCGGTTGATTTGAAGCCCCAGGCATGGTCTGATGAAGGCATGAACAGACTGGATCAATTAGC CACCTTGTTGAGATTTCCAAGCATTTCCGCACAGAAGGAACACGCCCGGGACGTGAGTGATTGCGCGGACTGGCTGGTAG ACAAATTGTCCGGCATGGGATTGGAAGCAAAGGCCTGTAAAACGCCCCTCCATCCCATTGTGCTGGCCCGCAGCCCGCGG GAGGAAGGAAAGCCCACCGTGCTGATTTACGGCCATTACGACGTGCAGCCCGTAGATCCTGTGGAATTATGGGAATCCGA CCCGTTTGAACCGGAAGTGAGGGACGGGAAGATTTACGCCCGCGGCGCTACGGACAACAAGGGGCAGCTGTTCGCCCATA TTCTGGGCGTGGAGGAATTGCTCTGCCAGAACGGAGGCCACCTCCCCGTAAATGTGATTTTCCTTCTGGAAGGGGAGGAA GAAGTGGGCAGCGGCAGTCTTTCCCAGTTTATCAAGGAGCACAGGGAAGAGCTGGCCTGCGACGTTATTGTAGTTTCCGA TACCGGCATGGCCGCTCCGGACACCCCTACGTTTTCCTACGGGCTGCGCGGCCTGGCCGGGGCGGAAATTATCGTCAAAG GCCCTTCCGCGGATCTTCATTCCGGCGTATTCGGAGGAGCGGTGGCCAATCCCATCGCCGCTCTTGCGGAAATAATCGCC TCCTTCCACGATGAAGAGGGGCGTGTGGCCGTGAGAGGGTTTTACGACGGCGTGGAACCTATCGCCACATGGGAACGCAG CATGTGGGCCACGGTTCCCGGCATGAGCAATGAGGAGCTGGCTCAGCTGACGGGCGTGGAAACCGTGGTGACGGAGGCCG GTTTCACCGGAGCGGAATGTATTTTTGCCCGCCCGACGCTGGAAATCAACGGTATCGGCGGAGGTTACCAGGGTGAGGGA AGCAAGACGATTATCCCCAGCCATGCCTTTGCCAAAATTTCATGCCGCCTGGTGCCGGGACAGCAGCCTGAAAGGATTGC AACCCTGCTGGAAGAACATGTAAAGAAACATTCCCCCAAGGGCGTCACGGTGGAATTCAGGCGGGGCCATGGCGGGAATG CTTACGTGTGCGATCCGAATTCCGAGTTCGGTCTTGCCGCCCAGCAGGCGCTGGAAGAGGCTTTTGGCCACAAACCCGTG CTGGTAAGGGAAGGGGGCAGCATCCCGATCATTGAAGAGATGAAGCGCGTGCTGGGAGCGGATGCCCTGATGCTGGGCAT GTGCCTTCCGGATGCCCGCATCCATTCCCCCAATGAGAACTTTCCCGTGGATTTGTTCTCCAAGGGCATTGACATGAGCC AGATTCTTCTGCGCCGCCTGGGGCAGATCAAGCATTGA
Upstream 100 bases:
>100_bases ATAATCCTATATAAAGGAACAAAACACACGCGAGAGCAATCAAATATTGTTCCCGGCGCCATGTGCGGGCTCCATTTTTT GAAAAAAGGCCCGTTCCGGC
Downstream 100 bases:
>100_bases CCTTTTTATGGACCAGCCTGTAGCCGCTGAAATAGTCAACCTGCACAAGACCTTTAAAACAGGTCTTGGCAAACCCGTGG TGCATGCCGTGCGGGGGATA
Product: peptidase M20
Products: NA
Alternate protein names: SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase [H]
Number of amino acids: Translated: 465; Mature: 465
Protein sequence:
>465_residues MECHTLPVDLKPQAWSDEGMNRLDQLATLLRFPSISAQKEHARDVSDCADWLVDKLSGMGLEAKACKTPLHPIVLARSPR EEGKPTVLIYGHYDVQPVDPVELWESDPFEPEVRDGKIYARGATDNKGQLFAHILGVEELLCQNGGHLPVNVIFLLEGEE EVGSGSLSQFIKEHREELACDVIVVSDTGMAAPDTPTFSYGLRGLAGAEIIVKGPSADLHSGVFGGAVANPIAALAEIIA SFHDEEGRVAVRGFYDGVEPIATWERSMWATVPGMSNEELAQLTGVETVVTEAGFTGAECIFARPTLEINGIGGGYQGEG SKTIIPSHAFAKISCRLVPGQQPERIATLLEEHVKKHSPKGVTVEFRRGHGGNAYVCDPNSEFGLAAQQALEEAFGHKPV LVREGGSIPIIEEMKRVLGADALMLGMCLPDARIHSPNENFPVDLFSKGIDMSQILLRRLGQIKH
Sequences:
>Translated_465_residues MECHTLPVDLKPQAWSDEGMNRLDQLATLLRFPSISAQKEHARDVSDCADWLVDKLSGMGLEAKACKTPLHPIVLARSPR EEGKPTVLIYGHYDVQPVDPVELWESDPFEPEVRDGKIYARGATDNKGQLFAHILGVEELLCQNGGHLPVNVIFLLEGEE EVGSGSLSQFIKEHREELACDVIVVSDTGMAAPDTPTFSYGLRGLAGAEIIVKGPSADLHSGVFGGAVANPIAALAEIIA SFHDEEGRVAVRGFYDGVEPIATWERSMWATVPGMSNEELAQLTGVETVVTEAGFTGAECIFARPTLEINGIGGGYQGEG SKTIIPSHAFAKISCRLVPGQQPERIATLLEEHVKKHSPKGVTVEFRRGHGGNAYVCDPNSEFGLAAQQALEEAFGHKPV LVREGGSIPIIEEMKRVLGADALMLGMCLPDARIHSPNENFPVDLFSKGIDMSQILLRRLGQIKH >Mature_465_residues MECHTLPVDLKPQAWSDEGMNRLDQLATLLRFPSISAQKEHARDVSDCADWLVDKLSGMGLEAKACKTPLHPIVLARSPR EEGKPTVLIYGHYDVQPVDPVELWESDPFEPEVRDGKIYARGATDNKGQLFAHILGVEELLCQNGGHLPVNVIFLLEGEE EVGSGSLSQFIKEHREELACDVIVVSDTGMAAPDTPTFSYGLRGLAGAEIIVKGPSADLHSGVFGGAVANPIAALAEIIA SFHDEEGRVAVRGFYDGVEPIATWERSMWATVPGMSNEELAQLTGVETVVTEAGFTGAECIFARPTLEINGIGGGYQGEG SKTIIPSHAFAKISCRLVPGQQPERIATLLEEHVKKHSPKGVTVEFRRGHGGNAYVCDPNSEFGLAAQQALEEAFGHKPV LVREGGSIPIIEEMKRVLGADALMLGMCLPDARIHSPNENFPVDLFSKGIDMSQILLRRLGQIKH
Specific function: Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bact
COG id: COG0624
COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M20A family. DapE subfamily [H]
Homologues:
Organism=Homo sapiens, GI271398239, Length=469, Percent_Identity=32.1961620469083, Blast_Score=214, Evalue=2e-55, Organism=Homo sapiens, GI21071039, Length=402, Percent_Identity=30.3482587064677, Blast_Score=194, Evalue=2e-49, Organism=Homo sapiens, GI271398277, Length=324, Percent_Identity=31.1728395061728, Blast_Score=154, Evalue=1e-37, Organism=Escherichia coli, GI1788816, Length=136, Percent_Identity=30.1470588235294, Blast_Score=63, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17563146, Length=459, Percent_Identity=30.718954248366, Blast_Score=217, Evalue=1e-56, Organism=Caenorhabditis elegans, GI193211059, Length=451, Percent_Identity=29.490022172949, Blast_Score=199, Evalue=2e-51, Organism=Saccharomyces cerevisiae, GI6321159, Length=464, Percent_Identity=32.3275862068966, Blast_Score=234, Evalue=3e-62, Organism=Saccharomyces cerevisiae, GI6319758, Length=458, Percent_Identity=27.5109170305677, Blast_Score=168, Evalue=1e-42, Organism=Drosophila melanogaster, GI24585880, Length=457, Percent_Identity=30.6345733041575, Blast_Score=211, Evalue=8e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005941 - InterPro: IPR002933 - InterPro: IPR011650 [H]
Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]
EC number: =3.5.1.18 [H]
Molecular weight: Translated: 50333; Mature: 50333
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MECHTLPVDLKPQAWSDEGMNRLDQLATLLRFPSISAQKEHARDVSDCADWLVDKLSGMG CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHCCC LEAKACKTPLHPIVLARSPREEGKPTVLIYGHYDVQPVDPVELWESDPFEPEVRDGKIYA CCHHHHCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEE RGATDNKGQLFAHILGVEELLCQNGGHLPVNVIFLLEGEEEVGSGSLSQFIKEHREELAC ECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHEE DVIVVSDTGMAAPDTPTFSYGLRGLAGAEIIVKGPSADLHSGVFGGAVANPIAALAEIIA EEEEEECCCCCCCCCCCHHHCCCCCCCCEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHH SFHDEEGRVAVRGFYDGVEPIATWERSMWATVPGMSNEELAQLTGVETVVTEAGFTGAEC HHCCCCCCEEEEECCCCCCHHHHHHHHHEEECCCCCCHHHHHHHCHHHHHHHCCCCCCEE IFARPTLEINGIGGGYQGEGSKTIIPSHAFAKISCRLVPGQQPERIATLLEEHVKKHSPK EEECCCEEEECCCCCCCCCCCCEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCC GVTVEFRRGHGGNAYVCDPNSEFGLAAQQALEEAFGHKPVLVREGGSIPIIEEMKRVLGA CCEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCC DALMLGMCLPDARIHSPNENFPVDLFSKGIDMSQILLRRLGQIKH CHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCC >Mature Secondary Structure MECHTLPVDLKPQAWSDEGMNRLDQLATLLRFPSISAQKEHARDVSDCADWLVDKLSGMG CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHCCC LEAKACKTPLHPIVLARSPREEGKPTVLIYGHYDVQPVDPVELWESDPFEPEVRDGKIYA CCHHHHCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEE RGATDNKGQLFAHILGVEELLCQNGGHLPVNVIFLLEGEEEVGSGSLSQFIKEHREELAC ECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHEE DVIVVSDTGMAAPDTPTFSYGLRGLAGAEIIVKGPSADLHSGVFGGAVANPIAALAEIIA EEEEEECCCCCCCCCCCHHHCCCCCCCCEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHH SFHDEEGRVAVRGFYDGVEPIATWERSMWATVPGMSNEELAQLTGVETVVTEAGFTGAEC HHCCCCCCEEEEECCCCCCHHHHHHHHHEEECCCCCCHHHHHHHCHHHHHHHCCCCCCEE IFARPTLEINGIGGGYQGEGSKTIIPSHAFAKISCRLVPGQQPERIATLLEEHVKKHSPK EEECCCEEEECCCCCCCCCCCCEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCC GVTVEFRRGHGGNAYVCDPNSEFGLAAQQALEEAFGHKPVLVREGGSIPIIEEMKRVLGA CCEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCC DALMLGMCLPDARIHSPNENFPVDLFSKGIDMSQILLRRLGQIKH CHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA