Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is arcB
Identifier: 187736241
GI number: 187736241
Start: 2135706
End: 2136623
Strand: Reverse
Name: arcB
Synonym: Amuc_1754
Alternate gene names: 187736241
Gene position: 2136623-2135706 (Counterclockwise)
Preceding gene: 187736242
Following gene: 187736240
Centisome position: 80.2
GC content: 60.02
Gene sequence:
>918_bases ATGAACAACCTCCTTTCCATCGAACAGCTTACCGGAGACGAAATCCGGGACCTGCTCGCCCTGGGCCACCGGCTTAAGGC GGAACGCGGCCATCACGAACGCCTTCCCCTGAAGGGGCAGACCTGGGCGCTCATCTTTTCCAAATCCTCCACCCGCACCC GCGTTTCCTTTGAAGTGGGCATCAGTGAACTGGGGGGCCGTCCCATGTTCCTTTCCGTCCATGACATCCAGCTCGGGCGT GGAGAGCCCATCAAGGATACGGCCCGCGTGCTGGGACGTATGATCCACGGCGCCGCCATCCGGACTTACGGACAGCAGGA GGTGGAGGAATTCGCCAGCTTTTCCGGCATTCCCACCATCAATGCCCTGACGGACGAGGAGCACCCCTGCCAGATCCTGG CGGACCTGCTTACCATTGAGGAAATCTACGGCCCCGGTTCCTGGAAGGATATGAAAATCGCCTTCGTGGGGGACGGGGAC AACAACATGTCCCGCTCTTGGATGTGGGCGGCCAAGAGGCTGGGCTTTACGCTCGCCATCGGAGCCCCTACCAATTACCT TCCCCTGGAAGACTTCCGCAGGCATCTGGACTGCGAGAACGTCATCTTCACCACGGACCCCGTGGAAGCCGTCAAGGGAG CTTCCGTCATCAACACGGATGTCTGGCTTTCCATGGGCCAGGAATCGGAAGGACTGTCCAAGGAAAAACACTTCTACCCC TACCAGGTGAACAGGGAGCTGCTGGAACATGCCGCCTCCGGCCACTCCGTTTTCCACTGCCTGCCCGCCTACCGCGGCAA GGAAATCACGGAAGACGTGCTGGAACATTTTGCTCCCGTTATCTTCCGGGAAGCGGAAAACAGGGTGCATGCCCAGAAAG CCGTGCTCGCCACGCTTGCAGACGCCCGCCGGGGATAA
Upstream 100 bases:
>100_bases GCATCTCCATCCCTCCCTGGAAAGCCGCATTATTCCCTTTTCTTTTAAGAAAACAGGGAGTATGGTGCGGCTTTCCCGTT TTTATTCCCTTTCAAAAACC
Downstream 100 bases:
>100_bases CCCGCCCGGCCCATCCTACCCAATCTCCGAGCCATGAACTACGAAGAACGCCTGCAAGACCTGCTGGATGAACTGGATTT GTTCCAGGACTGGACGGAAC
Product: ornithine carbamoyltransferase
Products: NA
Alternate protein names: OTCase
Number of amino acids: Translated: 305; Mature: 305
Protein sequence:
>305_residues MNNLLSIEQLTGDEIRDLLALGHRLKAERGHHERLPLKGQTWALIFSKSSTRTRVSFEVGISELGGRPMFLSVHDIQLGR GEPIKDTARVLGRMIHGAAIRTYGQQEVEEFASFSGIPTINALTDEEHPCQILADLLTIEEIYGPGSWKDMKIAFVGDGD NNMSRSWMWAAKRLGFTLAIGAPTNYLPLEDFRRHLDCENVIFTTDPVEAVKGASVINTDVWLSMGQESEGLSKEKHFYP YQVNRELLEHAASGHSVFHCLPAYRGKEITEDVLEHFAPVIFREAENRVHAQKAVLATLADARRG
Sequences:
>Translated_305_residues MNNLLSIEQLTGDEIRDLLALGHRLKAERGHHERLPLKGQTWALIFSKSSTRTRVSFEVGISELGGRPMFLSVHDIQLGR GEPIKDTARVLGRMIHGAAIRTYGQQEVEEFASFSGIPTINALTDEEHPCQILADLLTIEEIYGPGSWKDMKIAFVGDGD NNMSRSWMWAAKRLGFTLAIGAPTNYLPLEDFRRHLDCENVIFTTDPVEAVKGASVINTDVWLSMGQESEGLSKEKHFYP YQVNRELLEHAASGHSVFHCLPAYRGKEITEDVLEHFAPVIFREAENRVHAQKAVLATLADARRG >Mature_305_residues MNNLLSIEQLTGDEIRDLLALGHRLKAERGHHERLPLKGQTWALIFSKSSTRTRVSFEVGISELGGRPMFLSVHDIQLGR GEPIKDTARVLGRMIHGAAIRTYGQQEVEEFASFSGIPTINALTDEEHPCQILADLLTIEEIYGPGSWKDMKIAFVGDGD NNMSRSWMWAAKRLGFTLAIGAPTNYLPLEDFRRHLDCENVIFTTDPVEAVKGASVINTDVWLSMGQESEGLSKEKHFYP YQVNRELLEHAASGHSVFHCLPAYRGKEITEDVLEHFAPVIFREAENRVHAQKAVLATLADARRG
Specific function: Arginine biosynthesis; sixth step. [C]
COG id: COG0078
COG function: function code E; Ornithine carbamoyltransferase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATCase/OTCase family
Homologues:
Organism=Homo sapiens, GI38788445, Length=305, Percent_Identity=39.344262295082, Blast_Score=199, Evalue=2e-51, Organism=Escherichia coli, GI1790703, Length=326, Percent_Identity=38.6503067484663, Blast_Score=198, Evalue=4e-52, Organism=Escherichia coli, GI1786469, Length=329, Percent_Identity=37.3860182370821, Blast_Score=194, Evalue=8e-51, Organism=Escherichia coli, GI2367364, Length=312, Percent_Identity=28.8461538461538, Blast_Score=69, Evalue=5e-13, Organism=Caenorhabditis elegans, GI193204318, Length=336, Percent_Identity=26.4880952380952, Blast_Score=69, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6322373, Length=323, Percent_Identity=31.2693498452012, Blast_Score=162, Evalue=6e-41, Organism=Saccharomyces cerevisiae, GI6322331, Length=310, Percent_Identity=27.4193548387097, Blast_Score=79, Evalue=7e-16, Organism=Drosophila melanogaster, GI24642586, Length=164, Percent_Identity=31.0975609756098, Blast_Score=70, Evalue=2e-12,
Paralogues:
None
Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2066 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): OTC_AKKM8 (B2UML6)
Other databases:
- EMBL: CP001071 - RefSeq: YP_001878353.1 - GeneID: 6275012 - GenomeReviews: CP001071_GR - KEGG: amu:Amuc_1754 - HOGENOM: HBG579429 - HAMAP: MF_01109 - InterPro: IPR006132 - InterPro: IPR006130 - InterPro: IPR006131 - InterPro: IPR002292 - PRINTS: PR00100 - PRINTS: PR00102 - TIGRFAMs: TIGR00658
Pfam domain/function: PF00185 OTCace; PF02729 OTCace_N; SSF53671 Asp/Orn_carbamoyltranf
EC number: =2.1.3.3
Molecular weight: Translated: 34145; Mature: 34145
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: PS00097 CARBAMOYLTRANSFERASE
Important sites: BINDING 101-101 BINDING 128-128
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNLLSIEQLTGDEIRDLLALGHRLKAERGHHERLPLKGQTWALIFSKSSTRTRVSFEVG CCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEC ISELGGRPMFLSVHDIQLGRGEPIKDTARVLGRMIHGAAIRTYGQQEVEEFASFSGIPTI HHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCE NALTDEEHPCQILADLLTIEEIYGPGSWKDMKIAFVGDGDNNMSRSWMWAAKRLGFTLAI ECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCEEEEE GAPTNYLPLEDFRRHLDCENVIFTTDPVEAVKGASVINTDVWLSMGQESEGLSKEKHFYP CCCCCCCCHHHHHHHCCCCCEEEECCHHHHHCCCCEEEHHHHEECCCCCCCCCCCCCCCC YQVNRELLEHAASGHSVFHCLPAYRGKEITEDVLEHFAPVIFREAENRVHAQKAVLATLA HHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DARRG HHCCC >Mature Secondary Structure MNNLLSIEQLTGDEIRDLLALGHRLKAERGHHERLPLKGQTWALIFSKSSTRTRVSFEVG CCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEC ISELGGRPMFLSVHDIQLGRGEPIKDTARVLGRMIHGAAIRTYGQQEVEEFASFSGIPTI HHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCE NALTDEEHPCQILADLLTIEEIYGPGSWKDMKIAFVGDGDNNMSRSWMWAAKRLGFTLAI ECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCEEEEE GAPTNYLPLEDFRRHLDCENVIFTTDPVEAVKGASVINTDVWLSMGQESEGLSKEKHFYP CCCCCCCCHHHHHHHCCCCCEEEECCHHHHHCCCCEEEHHHHEECCCCCCCCCCCCCCCC YQVNRELLEHAASGHSVFHCLPAYRGKEITEDVLEHFAPVIFREAENRVHAQKAVLATLA HHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DARRG HHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA