Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is tarD [H]
Identifier: 187736234
GI number: 187736234
Start: 2126764
End: 2128119
Strand: Direct
Name: tarD [H]
Synonym: Amuc_1747
Alternate gene names: 187736234
Gene position: 2126764-2128119 (Clockwise)
Preceding gene: 187736233
Following gene: 187736237
Centisome position: 79.83
GC content: 53.47
Gene sequence:
>1356_bases ATGAAAACGGTTATTACTTACGGAACCTTTGATTTGCTGCACACGGGGCACGTGAATCTGCTGAAGAGAGCCCGGAAACT GGGGGACCGGCTCATCGTCGGCGTGACTACGGACAGTTACGACCAGAGCCGCGGCAAGCTGAATGTCATGGAGAGCCTGG AGGAACGCATGGAAAATGTGCGGAAAACCGGTCTGGCGGATCTCATTATTAAGGAAGAACTAGAAGGGCAGAAGATTCAT GACATACGGAAGTACGGGGCGGATGTTTTTGTGATTGGCTCCGACTGGTCGGGGAAATTTGACTATCTTCGCGATTATTG TGAGGTGGTTTACCTGGAACGCACCAAGGGCGTTTCTTCAACAGACCTCCGTTCCGCCCGGAATCCCATTGTATATATGG GAATTGCAGGTCACGGGCGCATAGCGGGCCGTTTTCTCCGGGAGTCCAAATATGTCAGCAATATTGAAATAACAGCCGTT TTCGGAAGGAATGAGGAGAAAGTCCGCCGTTTTGCAGAGTTCCACGCTCTGCTGGAATATTATACGGAATACGAACAGTT TCTGGACCGGGTTCATGCCGTTTATATTGCCGTCCCCCATCATCTCCATTATGAAATGGCCAGGAGGGCCCTGTTGCGGG GGAAGCATGTATTGTGCGAGAAGCCTCTTGCCCTTGCCCGGGAGGAGGCGGAAGAGCTGTTCCGGCTGGCCGAAGAGAAA GGAGTCGTTTTGCTGGAAGCCCTTAAAACTGCGTTTTGTCCGGCTTTCCAGCAACTGACCAGTTTGGCGGGGAGCGGCAT TATTGGTTCCATCAAGGCGGTGGACGCCACGTTTACCAAGCTGATAGAGGATGAGGCTGCCAGGGAGTATGACCCCATGC AGGCCGGAGGCGCCTGGACGGAACTGGGTTCCTATCCCGCCTTTGTCATTGGGAAGCTTCTGGGAACCGAGCCCCGCAGG ATTCGTTTTGTTACTTGCAGAAAGCCTCATACGGGCGTGGACGTGTTCACGCGCGCGGAATTTCTTTATTCCAATGCAGT AGCCACCGCCACGGCAGCCATAGGAGCCAAGCAGGAAGGGGACTTGTGCATTACCGGAACGGAGGGGTATATTTATGTGC CGGCGCCTTGGTGGAAGACGGAGATGTTTGAAGTGCGGTTTGAGGATGCCCGGCTCAACAGGAAATATTTTGCCAATTTT GAAGGGGATGGGCTGCGTTATGAACTTGGCGCGTTTTTGCGCCTGATTCATGGCTGCCAGCACGGCAACCGTCTTTTGAC CCGTGAGGATTCCGTGTTCATGGCTGATGTTGCCTCCCGTTTCAGGAGAGGGTATTGCGTGGAAGAGATCAGTTAG
Upstream 100 bases:
>100_bases AGCATCCTTCCGTGAAGGCCATGGTGGAGAAGGTTCCCTTTGAGGCGGCGGTCAACCGTTTCATTGACGTTTACGGAAAG CGGATTGATGCGCTCATGCC
Downstream 100 bases:
>100_bases AAAGAAGAGGCCTTCTTACACCTGTGGAATTCTGGGGTAGTGCCGACGGAACTTTTTCTTGGAACCGTTTTGTTTCGCAT GAATGGAAGCCATCCTATTA
Product: cytidyltransferase-related domain protein
Products: NA
Alternate protein names: GCT; Gro-PCT; CDP-glycerol pyrophosphorylase [H]
Number of amino acids: Translated: 451; Mature: 451
Protein sequence:
>451_residues MKTVITYGTFDLLHTGHVNLLKRARKLGDRLIVGVTTDSYDQSRGKLNVMESLEERMENVRKTGLADLIIKEELEGQKIH DIRKYGADVFVIGSDWSGKFDYLRDYCEVVYLERTKGVSSTDLRSARNPIVYMGIAGHGRIAGRFLRESKYVSNIEITAV FGRNEEKVRRFAEFHALLEYYTEYEQFLDRVHAVYIAVPHHLHYEMARRALLRGKHVLCEKPLALAREEAEELFRLAEEK GVVLLEALKTAFCPAFQQLTSLAGSGIIGSIKAVDATFTKLIEDEAAREYDPMQAGGAWTELGSYPAFVIGKLLGTEPRR IRFVTCRKPHTGVDVFTRAEFLYSNAVATATAAIGAKQEGDLCITGTEGYIYVPAPWWKTEMFEVRFEDARLNRKYFANF EGDGLRYELGAFLRLIHGCQHGNRLLTREDSVFMADVASRFRRGYCVEEIS
Sequences:
>Translated_451_residues MKTVITYGTFDLLHTGHVNLLKRARKLGDRLIVGVTTDSYDQSRGKLNVMESLEERMENVRKTGLADLIIKEELEGQKIH DIRKYGADVFVIGSDWSGKFDYLRDYCEVVYLERTKGVSSTDLRSARNPIVYMGIAGHGRIAGRFLRESKYVSNIEITAV FGRNEEKVRRFAEFHALLEYYTEYEQFLDRVHAVYIAVPHHLHYEMARRALLRGKHVLCEKPLALAREEAEELFRLAEEK GVVLLEALKTAFCPAFQQLTSLAGSGIIGSIKAVDATFTKLIEDEAAREYDPMQAGGAWTELGSYPAFVIGKLLGTEPRR IRFVTCRKPHTGVDVFTRAEFLYSNAVATATAAIGAKQEGDLCITGTEGYIYVPAPWWKTEMFEVRFEDARLNRKYFANF EGDGLRYELGAFLRLIHGCQHGNRLLTREDSVFMADVASRFRRGYCVEEIS >Mature_451_residues MKTVITYGTFDLLHTGHVNLLKRARKLGDRLIVGVTTDSYDQSRGKLNVMESLEERMENVRKTGLADLIIKEELEGQKIH DIRKYGADVFVIGSDWSGKFDYLRDYCEVVYLERTKGVSSTDLRSARNPIVYMGIAGHGRIAGRFLRESKYVSNIEITAV FGRNEEKVRRFAEFHALLEYYTEYEQFLDRVHAVYIAVPHHLHYEMARRALLRGKHVLCEKPLALAREEAEELFRLAEEK GVVLLEALKTAFCPAFQQLTSLAGSGIIGSIKAVDATFTKLIEDEAAREYDPMQAGGAWTELGSYPAFVIGKLLGTEPRR IRFVTCRKPHTGVDVFTRAEFLYSNAVATATAAIGAKQEGDLCITGTEGYIYVPAPWWKTEMFEVRFEDARLNRKYFANF EGDGLRYELGAFLRLIHGCQHGNRLLTREDSVFMADVASRFRRGYCVEEIS
Specific function: Provides activated glycerol phosphate for teichoic acid synthesis, via incorporation into the linkage unit by TarB and TarF (Probable) [H]
COG id: COG0615
COG function: function code MI; Cytidylyltransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cytidylyltransferase family [H]
Homologues:
Organism=Homo sapiens, GI7657212, Length=328, Percent_Identity=27.4390243902439, Blast_Score=100, Evalue=5e-21, Organism=Escherichia coli, GI145693182, Length=214, Percent_Identity=27.1028037383178, Blast_Score=77, Evalue=2e-15, Organism=Drosophila melanogaster, GI24581117, Length=327, Percent_Identity=26.2996941896024, Blast_Score=99, Evalue=7e-21, Organism=Drosophila melanogaster, GI24581115, Length=321, Percent_Identity=28.9719626168224, Blast_Score=91, Evalue=2e-18, Organism=Drosophila melanogaster, GI24584727, Length=223, Percent_Identity=27.3542600896861, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004821 - InterPro: IPR004820 - InterPro: IPR006409 - InterPro: IPR014729 [H]
Pfam domain/function: PF01467 CTP_transf_2 [H]
EC number: =2.7.7.39 [H]
Molecular weight: Translated: 51234; Mature: 51234
Theoretical pI: Translated: 7.37; Mature: 7.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTVITYGTFDLLHTGHVNLLKRARKLGDRLIVGVTTDSYDQSRGKLNVMESLEERMENV CCEEEEECCHHHHCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH RKTGLADLIIKEELEGQKIHDIRKYGADVFVIGSDWSGKFDYLRDYCEVVYLERTKGVSS HHCCHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHEEEEECCCCCCC TDLRSARNPIVYMGIAGHGRIAGRFLRESKYVSNIEITAVFGRNEEKVRRFAEFHALLEY HHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHH YTEYEQFLDRVHAVYIAVPHHLHYEMARRALLRGKHVLCEKPLALAREEAEELFRLAEEK HHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHC GVVLLEALKTAFCPAFQQLTSLAGSGIIGSIKAVDATFTKLIEDEAAREYDPMQAGGAWT CEEHHHHHHHHHCHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH ELGSYPAFVIGKLLGTEPRRIRFVTCRKPHTGVDVFTRAEFLYSNAVATATAAIGAKQEG HHCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC DLCITGTEGYIYVPAPWWKTEMFEVRFEDARLNRKYFANFEGDGLRYELGAFLRLIHGCQ CEEEECCCCEEEECCCCCCCCEEEEEEHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHC HGNRLLTREDSVFMADVASRFRRGYCVEEIS CCCEEEECCCCCHHHHHHHHHHCCCCHHCCC >Mature Secondary Structure MKTVITYGTFDLLHTGHVNLLKRARKLGDRLIVGVTTDSYDQSRGKLNVMESLEERMENV CCEEEEECCHHHHCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH RKTGLADLIIKEELEGQKIHDIRKYGADVFVIGSDWSGKFDYLRDYCEVVYLERTKGVSS HHCCHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHEEEEECCCCCCC TDLRSARNPIVYMGIAGHGRIAGRFLRESKYVSNIEITAVFGRNEEKVRRFAEFHALLEY HHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHH YTEYEQFLDRVHAVYIAVPHHLHYEMARRALLRGKHVLCEKPLALAREEAEELFRLAEEK HHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHC GVVLLEALKTAFCPAFQQLTSLAGSGIIGSIKAVDATFTKLIEDEAAREYDPMQAGGAWT CEEHHHHHHHHHCHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH ELGSYPAFVIGKLLGTEPRRIRFVTCRKPHTGVDVFTRAEFLYSNAVATATAAIGAKQEG HHCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC DLCITGTEGYIYVPAPWWKTEMFEVRFEDARLNRKYFANFEGDGLRYELGAFLRLIHGCQ CEEEECCCCEEEECCCCCCCCEEEEEEHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHC HGNRLLTREDSVFMADVASRFRRGYCVEEIS CCCEEEECCCCCHHHHHHHHHHCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11882717 [H]