Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is thrS [H]
Identifier: 187736219
GI number: 187736219
Start: 2114403
End: 2116295
Strand: Direct
Name: thrS [H]
Synonym: Amuc_1732
Alternate gene names: 187736219
Gene position: 2114403-2116295 (Clockwise)
Preceding gene: 187736211
Following gene: 187736220
Centisome position: 79.37
GC content: 61.54
Gene sequence:
>1893_bases ATGTCCGAACACAAGGAAAGAAAGACTCTTGAAGAACGCCAACAGATGTCTGATCTGGAACGGCTGCGCCACTCCTGCGC GCACGTTCTGGCTACGGCCATTTGCCGCCTCTGGCCGGATGCCCAGCTGGCCGGCGGGCCTGCCGTGGATAACGGTTTTT ATTACGACGTGGAGCTGGACCACCGCATCAGCACAGAGGATTTTGAACGCATTGAGGAGGAGATGAAAAAAGTGGTGAAG GAAAACCAGGTTTTCCAGAAGGAAGTCATTTCCCGCGCGGATGCCATGAAGATGGCGGAATCCGGGGAGCTGGGCGCCCT GGGCCCCCGCAGCGAGCCTTCCCGCTTCAAGATTGACCTGCTGAACGACATCCCGGAAGACGAGGAGATTTCCCTCTACC GCAACGGGGATTTTACGGACTTGTGCGCCGGTCCCCACGTGGGCCGCACGGGCAACTGCAAGGCATTCAAAATCATGAGC GTGGCGAGCGCCTTCTACAAGGGGGACAAAAACCGCCCCATGCTCCAGCGCATTTACGGCACCTGCTTCCCGAACCGCAC CCAGCTTGACGAACACCTGGAACGGCTGGAAGAGGCGCGGCGCCGCGACCACCGCAAACTGGGCCGCGAACTGGGCCTGT TCTGCATTGACGAATCCGTGGGGCAGGGGCTCATCCTCTGGAAGCCCAAGGGGGCTCTCATCCGCCGTTCCCTGCAGGAC TTCATCACGGAAGAGCTGGACAAGCTGGGCTACTCCCAGGTGTACACGCCCAACATCGGCAAGCTGGACCTGTACCGCAC GTCCGGACACTTCCCGTATTATCAGGAAAGCCAGTACGCGCCCATCCCAGAACGGGACGCCATGGAAAAACTCAGCCAGG AGGGGGCTTCCTGCGCGGAACTGTTCAACGGCCTGGCCACCGGCACCATTGAGGGCTATATGCTCAAGCCGATGAACTGC CCCCACCACATCAAGATTTACGCGAATGACGCCCACTCCTACCGGGACCTTCCCGTGCGGCTGGCGGAATTCGGCACGGT GTACCGTTGGGAACAGAGCGGAGAGCTGGGCGGCATGACGCGCGTGCGCGGTTTCACGCAGGATGACGCCCATATCTTCT GCACGCCGGACCAGCTTGCCGGGGAAATCCGCCAGTGCCTGGGCATCGTGAAAACCATTTTCGGTACGCTGGGCATGACG GACTACCGCGTGCGCCTTTCCATGCGCGACCCGGAAAGCGACAAATACGTGGGTTCTCCGGAAAATTGGGACAAAGCGGA ACAGGCTCTGCGGGAAGCTGCGGAATGGCTGGGGGCGGACTACAGCGAGGAAGCTGGGGAAGCCGCCTTCTACGGCCCCA AGATCGACTTCATCGTGCGCGACGCCATCGGCCGCGAATGGCAGCTGGGAACCGTGCAGGTGGACTACAACCTGCCGGAA CGCTTTGACCTCCATTACACCGGAGCGGACAACAAGCCGCACCGGCCCGTGATGGTGCACCGCGCCCCCTTCGGCTCCAT GGAACGCTTCACGGGGCTTCTGATTGAACACTTTGAAGGCAAATTCCCCACCTGGCTTTCCCCGGAACAGGTGCGCGTGC TTCCCATCTCCGACAAGGTGACGGACGTGGCCGCCGCGCATCGAACCGCCCTGGCCGCCAGAGGCGTGCGCGTCACGGTG GACGAAACGCCGGACAAAATAGGCGCCAAAATCCGCAATGCCCGTCTGGACCGCGTTCCCTACATGCTGGTGCTCGGCCA GCGGGAGGCGGAAGACGGCACCGTCTCCGTCCGCCACCGGGACAAGGGGGATCTGGGCGCGATGCCCTTTGAGCAATTCG CGGACCTCGTAGCCCGGGAAATCGCGGAGCGTCATATTTCTCCCGTGATTTGA
Upstream 100 bases:
>100_bases GAGGAAAGGGCTTTCCCGCGGCGTTCATGCCTTGAATTTTCGGGAAGAAGGTCTTTTTGCATTTGCCAACAGCGTTTAAG AGAGGTTTACTGATGCGCGT
Downstream 100 bases:
>100_bases GTTGCCAAGTTATTCCTTTTAGTTTAGTAGTATCCGGACGTGCCAACCAAGCCAACGAAGAATAATGACGGAAATCGCCG CCGTGACCGCGGCGATCAGA
Product: threonyl-tRNA synthetase
Products: NA
Alternate protein names: Threonine--tRNA ligase; ThrRS [H]
Number of amino acids: Translated: 630; Mature: 629
Protein sequence:
>630_residues MSEHKERKTLEERQQMSDLERLRHSCAHVLATAICRLWPDAQLAGGPAVDNGFYYDVELDHRISTEDFERIEEEMKKVVK ENQVFQKEVISRADAMKMAESGELGALGPRSEPSRFKIDLLNDIPEDEEISLYRNGDFTDLCAGPHVGRTGNCKAFKIMS VASAFYKGDKNRPMLQRIYGTCFPNRTQLDEHLERLEEARRRDHRKLGRELGLFCIDESVGQGLILWKPKGALIRRSLQD FITEELDKLGYSQVYTPNIGKLDLYRTSGHFPYYQESQYAPIPERDAMEKLSQEGASCAELFNGLATGTIEGYMLKPMNC PHHIKIYANDAHSYRDLPVRLAEFGTVYRWEQSGELGGMTRVRGFTQDDAHIFCTPDQLAGEIRQCLGIVKTIFGTLGMT DYRVRLSMRDPESDKYVGSPENWDKAEQALREAAEWLGADYSEEAGEAAFYGPKIDFIVRDAIGREWQLGTVQVDYNLPE RFDLHYTGADNKPHRPVMVHRAPFGSMERFTGLLIEHFEGKFPTWLSPEQVRVLPISDKVTDVAAAHRTALAARGVRVTV DETPDKIGAKIRNARLDRVPYMLVLGQREAEDGTVSVRHRDKGDLGAMPFEQFADLVAREIAERHISPVI
Sequences:
>Translated_630_residues MSEHKERKTLEERQQMSDLERLRHSCAHVLATAICRLWPDAQLAGGPAVDNGFYYDVELDHRISTEDFERIEEEMKKVVK ENQVFQKEVISRADAMKMAESGELGALGPRSEPSRFKIDLLNDIPEDEEISLYRNGDFTDLCAGPHVGRTGNCKAFKIMS VASAFYKGDKNRPMLQRIYGTCFPNRTQLDEHLERLEEARRRDHRKLGRELGLFCIDESVGQGLILWKPKGALIRRSLQD FITEELDKLGYSQVYTPNIGKLDLYRTSGHFPYYQESQYAPIPERDAMEKLSQEGASCAELFNGLATGTIEGYMLKPMNC PHHIKIYANDAHSYRDLPVRLAEFGTVYRWEQSGELGGMTRVRGFTQDDAHIFCTPDQLAGEIRQCLGIVKTIFGTLGMT DYRVRLSMRDPESDKYVGSPENWDKAEQALREAAEWLGADYSEEAGEAAFYGPKIDFIVRDAIGREWQLGTVQVDYNLPE RFDLHYTGADNKPHRPVMVHRAPFGSMERFTGLLIEHFEGKFPTWLSPEQVRVLPISDKVTDVAAAHRTALAARGVRVTV DETPDKIGAKIRNARLDRVPYMLVLGQREAEDGTVSVRHRDKGDLGAMPFEQFADLVAREIAERHISPVI >Mature_629_residues SEHKERKTLEERQQMSDLERLRHSCAHVLATAICRLWPDAQLAGGPAVDNGFYYDVELDHRISTEDFERIEEEMKKVVKE NQVFQKEVISRADAMKMAESGELGALGPRSEPSRFKIDLLNDIPEDEEISLYRNGDFTDLCAGPHVGRTGNCKAFKIMSV ASAFYKGDKNRPMLQRIYGTCFPNRTQLDEHLERLEEARRRDHRKLGRELGLFCIDESVGQGLILWKPKGALIRRSLQDF ITEELDKLGYSQVYTPNIGKLDLYRTSGHFPYYQESQYAPIPERDAMEKLSQEGASCAELFNGLATGTIEGYMLKPMNCP HHIKIYANDAHSYRDLPVRLAEFGTVYRWEQSGELGGMTRVRGFTQDDAHIFCTPDQLAGEIRQCLGIVKTIFGTLGMTD YRVRLSMRDPESDKYVGSPENWDKAEQALREAAEWLGADYSEEAGEAAFYGPKIDFIVRDAIGREWQLGTVQVDYNLPER FDLHYTGADNKPHRPVMVHRAPFGSMERFTGLLIEHFEGKFPTWLSPEQVRVLPISDKVTDVAAAHRTALAARGVRVTVD ETPDKIGAKIRNARLDRVPYMLVLGQREAEDGTVSVRHRDKGDLGAMPFEQFADLVAREIAERHISPVI
Specific function: Thrs Is Also A Translational Repressor Protein, It Controls The Translation Of Its Own Gene By Binding To Its mRNA. [C]
COG id: COG0441
COG function: function code J; Threonyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI38202255, Length=581, Percent_Identity=38.382099827883, Blast_Score=400, Evalue=1e-111, Organism=Homo sapiens, GI38570111, Length=581, Percent_Identity=36.6609294320138, Blast_Score=392, Evalue=1e-109, Organism=Homo sapiens, GI20070344, Length=586, Percent_Identity=36.1774744027304, Blast_Score=348, Evalue=9e-96, Organism=Escherichia coli, GI1788013, Length=610, Percent_Identity=41.8032786885246, Blast_Score=477, Evalue=1e-136, Organism=Caenorhabditis elegans, GI71984192, Length=601, Percent_Identity=37.1048252911814, Blast_Score=403, Evalue=1e-112, Organism=Caenorhabditis elegans, GI71984184, Length=601, Percent_Identity=37.1048252911814, Blast_Score=403, Evalue=1e-112, Organism=Saccharomyces cerevisiae, GI6322112, Length=593, Percent_Identity=37.9426644182125, Blast_Score=413, Evalue=1e-116, Organism=Saccharomyces cerevisiae, GI6322654, Length=441, Percent_Identity=33.1065759637188, Blast_Score=248, Evalue=3e-66, Organism=Drosophila melanogaster, GI24583842, Length=580, Percent_Identity=39.1379310344828, Blast_Score=420, Evalue=1e-117, Organism=Drosophila melanogaster, GI28574141, Length=580, Percent_Identity=39.1379310344828, Blast_Score=420, Evalue=1e-117, Organism=Drosophila melanogaster, GI24583839, Length=580, Percent_Identity=39.1379310344828, Blast_Score=420, Evalue=1e-117,
Paralogues:
None
Copy number: 700 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002314 - InterPro: IPR006195 - InterPro: IPR004154 - InterPro: IPR012675 - InterPro: IPR004095 - InterPro: IPR012676 - InterPro: IPR002320 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF03129 HGTP_anticodon; PF02824 TGS; PF00587 tRNA-synt_2b; PF07973 tRNA_SAD [H]
EC number: =6.1.1.3 [H]
Molecular weight: Translated: 71582; Mature: 71451
Theoretical pI: Translated: 5.75; Mature: 5.75
Prosite motif: PS50862 AA_TRNA_LIGASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEHKERKTLEERQQMSDLERLRHSCAHVLATAICRLWPDAQLAGGPAVDNGFYYDVELD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEC HRISTEDFERIEEEMKKVVKENQVFQKEVISRADAMKMAESGELGALGPRSEPSRFKIDL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEH LNDIPEDEEISLYRNGDFTDLCAGPHVGRTGNCKAFKIMSVASAFYKGDKNRPMLQRIYG HHCCCCCCCEEEEECCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH TCFPNRTQLDEHLERLEEARRRDHRKLGRELGLFCIDESVGQGLILWKPKGALIRRSLQD CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCEEEECCCHHHHHHHHHH FITEELDKLGYSQVYTPNIGKLDLYRTSGHFPYYQESQYAPIPERDAMEKLSQEGASCAE HHHHHHHHCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHH LFNGLATGTIEGYMLKPMNCPHHIKIYANDAHSYRDLPVRLAEFGTVYRWEQSGELGGMT HHCCHHHCCCCCEEECCCCCCCEEEEEECCCCCCCCCCHHHHHCCCEEEECCCCCCCCHH RVRGFTQDDAHIFCTPDQLAGEIRQCLGIVKTIFGTLGMTDYRVRLSMRDPESDKYVGSP HHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCC ENWDKAEQALREAAEWLGADYSEEAGEAAFYGPKIDFIVRDAIGREWQLGTVQVDYNLPE CCHHHHHHHHHHHHHHHCCCCCHHCCCEEEECCCEEEEEHHHCCCCEEEEEEEECCCCCC RFDLHYTGADNKPHRPVMVHRAPFGSMERFTGLLIEHFEGKFPTWLSPEQVRVLPISDKV CEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHH TDVAAAHRTALAARGVRVTVDETPDKIGAKIRNARLDRVPYMLVLGQREAEDGTVSVRHR HHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEEC DKGDLGAMPFEQFADLVAREIAERHISPVI CCCCCCCCCHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SEHKERKTLEERQQMSDLERLRHSCAHVLATAICRLWPDAQLAGGPAVDNGFYYDVELD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEC HRISTEDFERIEEEMKKVVKENQVFQKEVISRADAMKMAESGELGALGPRSEPSRFKIDL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEH LNDIPEDEEISLYRNGDFTDLCAGPHVGRTGNCKAFKIMSVASAFYKGDKNRPMLQRIYG HHCCCCCCCEEEEECCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH TCFPNRTQLDEHLERLEEARRRDHRKLGRELGLFCIDESVGQGLILWKPKGALIRRSLQD CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCEEEECCCHHHHHHHHHH FITEELDKLGYSQVYTPNIGKLDLYRTSGHFPYYQESQYAPIPERDAMEKLSQEGASCAE HHHHHHHHCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHH LFNGLATGTIEGYMLKPMNCPHHIKIYANDAHSYRDLPVRLAEFGTVYRWEQSGELGGMT HHCCHHHCCCCCEEECCCCCCCEEEEEECCCCCCCCCCHHHHHCCCEEEECCCCCCCCHH RVRGFTQDDAHIFCTPDQLAGEIRQCLGIVKTIFGTLGMTDYRVRLSMRDPESDKYVGSP HHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCC ENWDKAEQALREAAEWLGADYSEEAGEAAFYGPKIDFIVRDAIGREWQLGTVQVDYNLPE CCHHHHHHHHHHHHHHHCCCCCHHCCCEEEECCCEEEEEHHHCCCCEEEEEEEECCCCCC RFDLHYTGADNKPHRPVMVHRAPFGSMERFTGLLIEHFEGKFPTWLSPEQVRVLPISDKV CEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHH TDVAAAHRTALAARGVRVTVDETPDKIGAKIRNARLDRVPYMLVLGQREAEDGTVSVRHR HHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEEC DKGDLGAMPFEQFADLVAREIAERHISPVI CCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12835416 [H]