Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is yfbG [C]

Identifier: 187736213

GI number: 187736213

Start: 2107419

End: 2108351

Strand: Reverse

Name: yfbG [C]

Synonym: Amuc_1726

Alternate gene names: 187736213

Gene position: 2108351-2107419 (Counterclockwise)

Preceding gene: 187736214

Following gene: 187736212

Centisome position: 79.14

GC content: 53.59

Gene sequence:

>933_bases
ATGAGCAAAAGGATTTTGATTACCGGAGGCGCCGGCTTCATCGGCTCCCATCTCAGCGAACGGCTTCTCAGGGAAGGCCA
TGAAGTTATCTGCATGGACAATTTCTTCACGGGCAGCAAACAAAACATCCTCCACCTGACGGATTATCCCGGATTTGAAG
TAATACGCCATGACGTTACCGTTCCCTATGTCATGGAAGTTGACCAAATCTACAACCTGGCCTGCCCCGCCTCTCCTCCC
CATTATCAGTTTGACCCCATCCACACAATGAAGACCTCCGTGCTGGGCGCTCTGAATATGCTGGGCCTTGCCAAACGGTG
CAAGGCCAGAATCCTCCAGGCCTCCACCAGCGAAGTATACGGAGATCCCATGGTCCATCCCCAACCGGAAACCTACTGGG
GAAACGTCAACCCCGTGGGCGTCCGCTCCTGCTATGACGAAGGCAAAAGATGCGCGGAGACCCTGTTCATGGACTACCGC
CGCATGAACGGGGTGGACGTTCGCATCATCCGCATCTTCAACACTTACGGACCGCGAATGAACCCTAACGACGGAAGAGT
AGTCTCCAACTTCATCGTCCAGGCGCTGAAGGGGGAAGACATCACCATTTACGGAACGGGCAAACAGACCCGGAGTTTCC
AGTACGTGGACGACCTGGTGGAGGGGATGGTGCGCATGATGGATACGGAAGGTTTTTCCGGCCCGGTCAACCTGGGTAAT
CCAGAGGAATTCACCATGCTGGAACTGGCAGAAAAAGTCATTGAAATGACAGGCTCTTCTTCCAAAACAGTATTCCGTCC
TCTGCCCTTGGACGACCCGACCCAACGCAAACCGGATATTCGGCTGGCAAAAGAAAAGCTGGGTTGGAAGCCTCATATTA
CGCTGGAAAAAGGGTTGGAAAAGACCATCGCCTATTTCCGGAGCATTCTCTAG

Upstream 100 bases:

>100_bases
CGGATATGTGACATTGAACCGCAACGCACGGACAGGGGAAAACTTTCCGCTTGCTTCCCTTCCGGCGCGGCGGAACGAAC
AAACGCACGGACATGCCATC

Downstream 100 bases:

>100_bases
AAATAAGGTAAGTCAATCTCAGCGGCTGCTGACAAAATTTCTATTGCATGCCGACAGCCCGGAAATTACGGGGCCATTCA
TTTACCGGGGGTGCGGCATG

Product: NAD-dependent epimerase/dehydratase

Products: NA

Alternate protein names: Galactowaldenase; UDP-galactose 4-epimerase [H]

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MSKRILITGGAGFIGSHLSERLLREGHEVICMDNFFTGSKQNILHLTDYPGFEVIRHDVTVPYVMEVDQIYNLACPASPP
HYQFDPIHTMKTSVLGALNMLGLAKRCKARILQASTSEVYGDPMVHPQPETYWGNVNPVGVRSCYDEGKRCAETLFMDYR
RMNGVDVRIIRIFNTYGPRMNPNDGRVVSNFIVQALKGEDITIYGTGKQTRSFQYVDDLVEGMVRMMDTEGFSGPVNLGN
PEEFTMLELAEKVIEMTGSSSKTVFRPLPLDDPTQRKPDIRLAKEKLGWKPHITLEKGLEKTIAYFRSIL

Sequences:

>Translated_310_residues
MSKRILITGGAGFIGSHLSERLLREGHEVICMDNFFTGSKQNILHLTDYPGFEVIRHDVTVPYVMEVDQIYNLACPASPP
HYQFDPIHTMKTSVLGALNMLGLAKRCKARILQASTSEVYGDPMVHPQPETYWGNVNPVGVRSCYDEGKRCAETLFMDYR
RMNGVDVRIIRIFNTYGPRMNPNDGRVVSNFIVQALKGEDITIYGTGKQTRSFQYVDDLVEGMVRMMDTEGFSGPVNLGN
PEEFTMLELAEKVIEMTGSSSKTVFRPLPLDDPTQRKPDIRLAKEKLGWKPHITLEKGLEKTIAYFRSIL
>Mature_309_residues
SKRILITGGAGFIGSHLSERLLREGHEVICMDNFFTGSKQNILHLTDYPGFEVIRHDVTVPYVMEVDQIYNLACPASPPH
YQFDPIHTMKTSVLGALNMLGLAKRCKARILQASTSEVYGDPMVHPQPETYWGNVNPVGVRSCYDEGKRCAETLFMDYRR
MNGVDVRIIRIFNTYGPRMNPNDGRVVSNFIVQALKGEDITIYGTGKQTRSFQYVDDLVEGMVRMMDTEGFSGPVNLGNP
EEFTMLELAEKVIEMTGSSSKTVFRPLPLDDPTQRKPDIRLAKEKLGWKPHITLEKGLEKTIAYFRSIL

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family [H]

Homologues:

Organism=Homo sapiens, GI42516563, Length=308, Percent_Identity=61.3636363636364, Blast_Score=403, Evalue=1e-112,
Organism=Homo sapiens, GI7657641, Length=325, Percent_Identity=26.7692307692308, Blast_Score=102, Evalue=4e-22,
Organism=Escherichia coli, GI1788589, Length=337, Percent_Identity=28.7833827893175, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI48994969, Length=335, Percent_Identity=25.0746268656716, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788353, Length=341, Percent_Identity=25.2199413489736, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1786974, Length=336, Percent_Identity=24.1071428571429, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788365, Length=335, Percent_Identity=25.0746268656716, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17539532, Length=307, Percent_Identity=59.2833876221498, Blast_Score=398, Evalue=1e-111,
Organism=Caenorhabditis elegans, GI71982035, Length=351, Percent_Identity=24.7863247863248, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17568069, Length=328, Percent_Identity=26.219512195122, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI115532424, Length=329, Percent_Identity=25.2279635258359, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI21356223, Length=308, Percent_Identity=59.0909090909091, Blast_Score=391, Evalue=1e-109,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: =5.1.3.2 [H]

Molecular weight: Translated: 35031; Mature: 34900

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKRILITGGAGFIGSHLSERLLREGHEVICMDNFFTGSKQNILHLTDYPGFEVIRHDVT
CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCHHHHHHCCC
VPYVMEVDQIYNLACPASPPHYQFDPIHTMKTSVLGALNMLGLAKRCKARILQASTSEVY
CHHHEEHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHC
GDPMVHPQPETYWGNVNPVGVRSCYDEGKRCAETLFMDYRRMNGVDVRIIRIFNTYGPRM
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
NPNDGRVVSNFIVQALKGEDITIYGTGKQTRSFQYVDDLVEGMVRMMDTEGFSGPVNLGN
CCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PEEFTMLELAEKVIEMTGSSSKTVFRPLPLDDPTQRKPDIRLAKEKLGWKPHITLEKGLE
CCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHH
KTIAYFRSIL
HHHHHHHHCC
>Mature Secondary Structure 
SKRILITGGAGFIGSHLSERLLREGHEVICMDNFFTGSKQNILHLTDYPGFEVIRHDVT
CCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCHHHHHHCCC
VPYVMEVDQIYNLACPASPPHYQFDPIHTMKTSVLGALNMLGLAKRCKARILQASTSEVY
CHHHEEHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHC
GDPMVHPQPETYWGNVNPVGVRSCYDEGKRCAETLFMDYRRMNGVDVRIIRIFNTYGPRM
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
NPNDGRVVSNFIVQALKGEDITIYGTGKQTRSFQYVDDLVEGMVRMMDTEGFSGPVNLGN
CCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PEEFTMLELAEKVIEMTGSSSKTVFRPLPLDDPTQRKPDIRLAKEKLGWKPHITLEKGLE
CCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHH
KTIAYFRSIL
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]