Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is yfbG [C]
Identifier: 187736213
GI number: 187736213
Start: 2107419
End: 2108351
Strand: Reverse
Name: yfbG [C]
Synonym: Amuc_1726
Alternate gene names: 187736213
Gene position: 2108351-2107419 (Counterclockwise)
Preceding gene: 187736214
Following gene: 187736212
Centisome position: 79.14
GC content: 53.59
Gene sequence:
>933_bases ATGAGCAAAAGGATTTTGATTACCGGAGGCGCCGGCTTCATCGGCTCCCATCTCAGCGAACGGCTTCTCAGGGAAGGCCA TGAAGTTATCTGCATGGACAATTTCTTCACGGGCAGCAAACAAAACATCCTCCACCTGACGGATTATCCCGGATTTGAAG TAATACGCCATGACGTTACCGTTCCCTATGTCATGGAAGTTGACCAAATCTACAACCTGGCCTGCCCCGCCTCTCCTCCC CATTATCAGTTTGACCCCATCCACACAATGAAGACCTCCGTGCTGGGCGCTCTGAATATGCTGGGCCTTGCCAAACGGTG CAAGGCCAGAATCCTCCAGGCCTCCACCAGCGAAGTATACGGAGATCCCATGGTCCATCCCCAACCGGAAACCTACTGGG GAAACGTCAACCCCGTGGGCGTCCGCTCCTGCTATGACGAAGGCAAAAGATGCGCGGAGACCCTGTTCATGGACTACCGC CGCATGAACGGGGTGGACGTTCGCATCATCCGCATCTTCAACACTTACGGACCGCGAATGAACCCTAACGACGGAAGAGT AGTCTCCAACTTCATCGTCCAGGCGCTGAAGGGGGAAGACATCACCATTTACGGAACGGGCAAACAGACCCGGAGTTTCC AGTACGTGGACGACCTGGTGGAGGGGATGGTGCGCATGATGGATACGGAAGGTTTTTCCGGCCCGGTCAACCTGGGTAAT CCAGAGGAATTCACCATGCTGGAACTGGCAGAAAAAGTCATTGAAATGACAGGCTCTTCTTCCAAAACAGTATTCCGTCC TCTGCCCTTGGACGACCCGACCCAACGCAAACCGGATATTCGGCTGGCAAAAGAAAAGCTGGGTTGGAAGCCTCATATTA CGCTGGAAAAAGGGTTGGAAAAGACCATCGCCTATTTCCGGAGCATTCTCTAG
Upstream 100 bases:
>100_bases CGGATATGTGACATTGAACCGCAACGCACGGACAGGGGAAAACTTTCCGCTTGCTTCCCTTCCGGCGCGGCGGAACGAAC AAACGCACGGACATGCCATC
Downstream 100 bases:
>100_bases AAATAAGGTAAGTCAATCTCAGCGGCTGCTGACAAAATTTCTATTGCATGCCGACAGCCCGGAAATTACGGGGCCATTCA TTTACCGGGGGTGCGGCATG
Product: NAD-dependent epimerase/dehydratase
Products: NA
Alternate protein names: Galactowaldenase; UDP-galactose 4-epimerase [H]
Number of amino acids: Translated: 310; Mature: 309
Protein sequence:
>310_residues MSKRILITGGAGFIGSHLSERLLREGHEVICMDNFFTGSKQNILHLTDYPGFEVIRHDVTVPYVMEVDQIYNLACPASPP HYQFDPIHTMKTSVLGALNMLGLAKRCKARILQASTSEVYGDPMVHPQPETYWGNVNPVGVRSCYDEGKRCAETLFMDYR RMNGVDVRIIRIFNTYGPRMNPNDGRVVSNFIVQALKGEDITIYGTGKQTRSFQYVDDLVEGMVRMMDTEGFSGPVNLGN PEEFTMLELAEKVIEMTGSSSKTVFRPLPLDDPTQRKPDIRLAKEKLGWKPHITLEKGLEKTIAYFRSIL
Sequences:
>Translated_310_residues MSKRILITGGAGFIGSHLSERLLREGHEVICMDNFFTGSKQNILHLTDYPGFEVIRHDVTVPYVMEVDQIYNLACPASPP HYQFDPIHTMKTSVLGALNMLGLAKRCKARILQASTSEVYGDPMVHPQPETYWGNVNPVGVRSCYDEGKRCAETLFMDYR RMNGVDVRIIRIFNTYGPRMNPNDGRVVSNFIVQALKGEDITIYGTGKQTRSFQYVDDLVEGMVRMMDTEGFSGPVNLGN PEEFTMLELAEKVIEMTGSSSKTVFRPLPLDDPTQRKPDIRLAKEKLGWKPHITLEKGLEKTIAYFRSIL >Mature_309_residues SKRILITGGAGFIGSHLSERLLREGHEVICMDNFFTGSKQNILHLTDYPGFEVIRHDVTVPYVMEVDQIYNLACPASPPH YQFDPIHTMKTSVLGALNMLGLAKRCKARILQASTSEVYGDPMVHPQPETYWGNVNPVGVRSCYDEGKRCAETLFMDYRR MNGVDVRIIRIFNTYGPRMNPNDGRVVSNFIVQALKGEDITIYGTGKQTRSFQYVDDLVEGMVRMMDTEGFSGPVNLGNP EEFTMLELAEKVIEMTGSSSKTVFRPLPLDDPTQRKPDIRLAKEKLGWKPHITLEKGLEKTIAYFRSIL
Specific function: Unknown
COG id: COG0451
COG function: function code MG; Nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sugar epimerase family [H]
Homologues:
Organism=Homo sapiens, GI42516563, Length=308, Percent_Identity=61.3636363636364, Blast_Score=403, Evalue=1e-112, Organism=Homo sapiens, GI7657641, Length=325, Percent_Identity=26.7692307692308, Blast_Score=102, Evalue=4e-22, Organism=Escherichia coli, GI1788589, Length=337, Percent_Identity=28.7833827893175, Blast_Score=113, Evalue=2e-26, Organism=Escherichia coli, GI48994969, Length=335, Percent_Identity=25.0746268656716, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1788353, Length=341, Percent_Identity=25.2199413489736, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1786974, Length=336, Percent_Identity=24.1071428571429, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1788365, Length=335, Percent_Identity=25.0746268656716, Blast_Score=69, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17539532, Length=307, Percent_Identity=59.2833876221498, Blast_Score=398, Evalue=1e-111, Organism=Caenorhabditis elegans, GI71982035, Length=351, Percent_Identity=24.7863247863248, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17568069, Length=328, Percent_Identity=26.219512195122, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI115532424, Length=329, Percent_Identity=25.2279635258359, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI21356223, Length=308, Percent_Identity=59.0909090909091, Blast_Score=391, Evalue=1e-109,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001509 - InterPro: IPR016040 [H]
Pfam domain/function: PF01370 Epimerase [H]
EC number: =5.1.3.2 [H]
Molecular weight: Translated: 35031; Mature: 34900
Theoretical pI: Translated: 7.22; Mature: 7.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKRILITGGAGFIGSHLSERLLREGHEVICMDNFFTGSKQNILHLTDYPGFEVIRHDVT CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCHHHHHHCCC VPYVMEVDQIYNLACPASPPHYQFDPIHTMKTSVLGALNMLGLAKRCKARILQASTSEVY CHHHEEHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHC GDPMVHPQPETYWGNVNPVGVRSCYDEGKRCAETLFMDYRRMNGVDVRIIRIFNTYGPRM CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC NPNDGRVVSNFIVQALKGEDITIYGTGKQTRSFQYVDDLVEGMVRMMDTEGFSGPVNLGN CCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC PEEFTMLELAEKVIEMTGSSSKTVFRPLPLDDPTQRKPDIRLAKEKLGWKPHITLEKGLE CCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHH KTIAYFRSIL HHHHHHHHCC >Mature Secondary Structure SKRILITGGAGFIGSHLSERLLREGHEVICMDNFFTGSKQNILHLTDYPGFEVIRHDVT CCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCHHHHHHCCC VPYVMEVDQIYNLACPASPPHYQFDPIHTMKTSVLGALNMLGLAKRCKARILQASTSEVY CHHHEEHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHC GDPMVHPQPETYWGNVNPVGVRSCYDEGKRCAETLFMDYRRMNGVDVRIIRIFNTYGPRM CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC NPNDGRVVSNFIVQALKGEDITIYGTGKQTRSFQYVDDLVEGMVRMMDTEGFSGPVNLGN CCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC PEEFTMLELAEKVIEMTGSSSKTVFRPLPLDDPTQRKPDIRLAKEKLGWKPHITLEKGLE CCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHH KTIAYFRSIL HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]