Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is sucD [H]

Identifier: 187736199

GI number: 187736199

Start: 2080685

End: 2081572

Strand: Reverse

Name: sucD [H]

Synonym: Amuc_1712

Alternate gene names: 187736199

Gene position: 2081572-2080685 (Counterclockwise)

Preceding gene: 187736200

Following gene: 187736194

Centisome position: 78.13

GC content: 58.22

Gene sequence:

>888_bases
ATGACATCTCTCATTGACAAGAACACTCGTCTGGTCGTGCAAGGCATCACCGGCAGCGCCGGCGCATTCCACGCCAAAAA
CTGCATGGACTTCGGCACCAACGTCGTCGCCGGCGTGACCCCCGGCAAGGGCGGCCAGCTCTTTGAAGGCAAGGTCCCCG
TCTTCGATACTGTAGCGGAAGCCAAAAAGGCCACGGACTGCAACGCCTCCATGATCTTCGTTCCCCCACCCTTCGCTGCG
GACGCCATCATGGAAGCCGCGGACGCGGGCGTGAAGCTCATCGTCTGCATCACGGAAGGTATTCCTGTGCAGGACATGCA
GAAGGTGAAAACTTTCCTGAAGGACAAGGACGTGACTCTCATCGGCCCGAACTGCCCAGGAATTGTCAATCCTTCCGCCA
ACTGCAAGATCGGCATCATGCCGGCCTACATTTTCAAACCCGGCAGAATCGGTATTGTCTCCCGTTCCGGAACGCTTACC
TATGAAGCCGTCTGGCAGGTTACCAACATGGGCCTTGGCCAGAGCATGTGCATCGGCATCGGCGGCGACCCTGTCCATGG
CATGACCCAGCAGCAGGCCGTGCAATTCTTCACGGAAGACCCGAACACGGACGCCTTCATCATGATTGGCGAAATCGGCG
GTTCCGAAGAAGAAGAAGCTGCTGAATGGATCAAGAACAACTGCAAAAAACCTGTTGCCGCGTTCATCGCAGGAGCCACG
GCGCCCAAGGGCCGCCGCATGGGCCATGCAGGAGCCATCGTTGCCGGAGGCAAAGGTACTGCCGCCGCTAAGCAGGAAGC
CCTGAAGAACGCCGGTATTGTAGTTGCCAAGACACCGGCTCAGATGGGTGCCGCCCTGGCGGAAGCCATGAAAAACAAGG
GGATGTAA

Upstream 100 bases:

>100_bases
CGCAGACAGCGGCATCGCCATCATCCCTGCCGACAACCTGGACGAAGCCGCCCAGAAAGCGGTGGCAGCAGTCAAATAAC
CCTCACTATTTATTACGACA

Downstream 100 bases:

>100_bases
CCCCCCCCTCTTTTTCACCTTTTCATATCCAGCGCCTTCCCTTGCCGGAAGGCGCTTTTTTTATGATAAAACGGAGTTGA
CTACATCACGCGGATTTTAT

Product: succinyl-CoA synthetase, alpha subunit

Products: NA

Alternate protein names: Succinyl-CoA synthetase subunit alpha; SCS-alpha; Vegetative protein 239; VEG239 [H]

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MTSLIDKNTRLVVQGITGSAGAFHAKNCMDFGTNVVAGVTPGKGGQLFEGKVPVFDTVAEAKKATDCNASMIFVPPPFAA
DAIMEAADAGVKLIVCITEGIPVQDMQKVKTFLKDKDVTLIGPNCPGIVNPSANCKIGIMPAYIFKPGRIGIVSRSGTLT
YEAVWQVTNMGLGQSMCIGIGGDPVHGMTQQQAVQFFTEDPNTDAFIMIGEIGGSEEEEAAEWIKNNCKKPVAAFIAGAT
APKGRRMGHAGAIVAGGKGTAAAKQEALKNAGIVVAKTPAQMGAALAEAMKNKGM

Sequences:

>Translated_295_residues
MTSLIDKNTRLVVQGITGSAGAFHAKNCMDFGTNVVAGVTPGKGGQLFEGKVPVFDTVAEAKKATDCNASMIFVPPPFAA
DAIMEAADAGVKLIVCITEGIPVQDMQKVKTFLKDKDVTLIGPNCPGIVNPSANCKIGIMPAYIFKPGRIGIVSRSGTLT
YEAVWQVTNMGLGQSMCIGIGGDPVHGMTQQQAVQFFTEDPNTDAFIMIGEIGGSEEEEAAEWIKNNCKKPVAAFIAGAT
APKGRRMGHAGAIVAGGKGTAAAKQEALKNAGIVVAKTPAQMGAALAEAMKNKGM
>Mature_294_residues
TSLIDKNTRLVVQGITGSAGAFHAKNCMDFGTNVVAGVTPGKGGQLFEGKVPVFDTVAEAKKATDCNASMIFVPPPFAAD
AIMEAADAGVKLIVCITEGIPVQDMQKVKTFLKDKDVTLIGPNCPGIVNPSANCKIGIMPAYIFKPGRIGIVSRSGTLTY
EAVWQVTNMGLGQSMCIGIGGDPVHGMTQQQAVQFFTEDPNTDAFIMIGEIGGSEEEEAAEWIKNNCKKPVAAFIAGATA
PKGRRMGHAGAIVAGGKGTAAAKQEALKNAGIVVAKTPAQMGAALAEAMKNKGM

Specific function: Unknown

COG id: COG0074

COG function: function code C; Succinyl-CoA synthetase, alpha subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the succinate/malate CoA ligase alpha subunit family [H]

Homologues:

Organism=Homo sapiens, GI109452591, Length=296, Percent_Identity=56.4189189189189, Blast_Score=280, Evalue=2e-75,
Organism=Homo sapiens, GI38569421, Length=319, Percent_Identity=29.153605015674, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI38569423, Length=319, Percent_Identity=29.153605015674, Blast_Score=102, Evalue=5e-22,
Organism=Escherichia coli, GI1786949, Length=291, Percent_Identity=57.3883161512027, Blast_Score=334, Evalue=4e-93,
Organism=Caenorhabditis elegans, GI17553126, Length=292, Percent_Identity=56.5068493150685, Blast_Score=297, Evalue=3e-81,
Organism=Caenorhabditis elegans, GI17550194, Length=294, Percent_Identity=54.0816326530612, Blast_Score=289, Evalue=1e-78,
Organism=Caenorhabditis elegans, GI17557344, Length=285, Percent_Identity=28.7719298245614, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17551266, Length=283, Percent_Identity=28.2685512367491, Blast_Score=89, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6324716, Length=293, Percent_Identity=50.1706484641638, Blast_Score=272, Evalue=5e-74,
Organism=Drosophila melanogaster, GI21356559, Length=291, Percent_Identity=51.5463917525773, Blast_Score=287, Evalue=5e-78,
Organism=Drosophila melanogaster, GI28574296, Length=293, Percent_Identity=52.901023890785, Blast_Score=275, Evalue=2e-74,
Organism=Drosophila melanogaster, GI281363475, Length=277, Percent_Identity=27.7978339350181, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI281363473, Length=277, Percent_Identity=27.7978339350181, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI281363477, Length=277, Percent_Identity=27.7978339350181, Blast_Score=87, Evalue=1e-17,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017440
- InterPro:   IPR003781
- InterPro:   IPR005810
- InterPro:   IPR005811
- InterPro:   IPR016040
- InterPro:   IPR016102 [H]

Pfam domain/function: PF02629 CoA_binding; PF00549 Ligase_CoA [H]

EC number: =6.2.1.5 [H]

Molecular weight: Translated: 30574; Mature: 30443

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS01216 SUCCINYL_COA_LIG_1 ; PS00399 SUCCINYL_COA_LIG_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLIDKNTRLVVQGITGSAGAFHAKNCMDFGTNVVAGVTPGKGGQLFEGKVPVFDTVAE
CCCCCCCCCEEEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCCCEEECCCCHHHHHHH
AKKATDCNASMIFVPPPFAADAIMEAADAGVKLIVCITEGIPVQDMQKVKTFLKDKDVTL
HHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEE
IGPNCPGIVNPSANCKIGIMPAYIFKPGRIGIVSRSGTLTYEAVWQVTNMGLGQSMCIGI
ECCCCCCCCCCCCCCEEEEEEHEEECCCCEEEEECCCCEEHHHHHHHHCCCCCCEEEEEC
GGDPVHGMTQQQAVQFFTEDPNTDAFIMIGEIGGSEEEEAAEWIKNNCKKPVAAFIAGAT
CCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHCCC
APKGRRMGHAGAIVAGGKGTAAAKQEALKNAGIVVAKTPAQMGAALAEAMKNKGM
CCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TSLIDKNTRLVVQGITGSAGAFHAKNCMDFGTNVVAGVTPGKGGQLFEGKVPVFDTVAE
CCCCCCCCEEEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCCCEEECCCCHHHHHHH
AKKATDCNASMIFVPPPFAADAIMEAADAGVKLIVCITEGIPVQDMQKVKTFLKDKDVTL
HHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEE
IGPNCPGIVNPSANCKIGIMPAYIFKPGRIGIVSRSGTLTYEAVWQVTNMGLGQSMCIGI
ECCCCCCCCCCCCCCEEEEEEHEEECCCCEEEEECCCCEEHHHHHHHHCCCCCCEEEEEC
GGDPVHGMTQQQAVQFFTEDPNTDAFIMIGEIGGSEEEEAAEWIKNNCKKPVAAFIAGAT
CCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHCCC
APKGRRMGHAGAIVAGGKGTAAAKQEALKNAGIVVAKTPAQMGAALAEAMKNKGM
CCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9298659 [H]