Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is sucC
Identifier: 187736200
GI number: 187736200
Start: 2081594
End: 2082775
Strand: Reverse
Name: sucC
Synonym: Amuc_1713
Alternate gene names: 187736200
Gene position: 2082775-2081594 (Counterclockwise)
Preceding gene: 187736205
Following gene: 187736199
Centisome position: 78.18
GC content: 56.94
Gene sequence:
>1182_bases ATGAACATTCACGAATATCAAGCAAAACAACTCTTTGAGCGTTTTGGCGTGGCAACCCCCAAGGGCATTGCCGCCTCCAC AGCTCAGGAAGCAGCACAAACGGCCCGGAACATGGGCCTCTCCCAATACGTAGTTAAGGCACAGGTACACGCTGGCGGCC GTGGTAAAGGCACCTTCAAAAACGGCTTTAAGGGAGGCGTCCACGTCGTCAAGTCCGTGGAAGAAGTGGAAGAAGTTGCC GGCAAAATGCTCAACCAGGTTCTGGTCACCAAGCAAACCGGGGAAGCCGGCAAGCTGGTCAGCAAAATCATGGTGGCGGA AGCCGTGGATCTCAAAAAGGAATGCTACTTCGCTATCCTTCAGGACCGCGCCCGGGAATGCCCCGTTATCGTGGCCAGTA CGGAAGGCGGCATGGACATTGAAGAAGTGGCCGCCACCCGCCCGGAAGCCATTATCCGCGAACACATTAATCCGGCGCTG GGCATCCTGCCTTTCCAGGCTCTCAAAATCGCCGTGGCGCTGGAACTGACCGGCCCCCTGCTCCGCCAGGCCACCAAGCT TATCACCAACGTTTACAAGCTTTTCACCGCTCTGGACTGCTCCCTGGTGGAAATCAACCCCCTGGTAGTCACCACAGATG ACCGCGTGTGTGCCCTGGACGCCAAATTCAATTTTGACGACAACGCCCTGTATCGCCACCCGGAAATCATGGAAATGCGG GATGAAACTGAAGAAGACCCCCGTGAAGTGGAAGCCGGCAAGTACGACCTGAACTACATCGGCCTGGACGGCAACATTGG CTGCATGGTGAACGGCGCCGGCCTGGCCATGGCCACGATGGACATCATCAAATACTACGGCGGAGAACCCGCCAACTTCC TGGACGTAGGCGGTTCCGCCACGGAGGAAATGGTAACTAATGCGTTCCGCATCCTCACCAGCGACAAGAATGTGAAGGCC CTTCTGGTCAATATCTTCGGCGGCATCATGCGCTGTGACGTCATCGCCCAGGGCATTGTGGCCGCGGCGAAAAACATCGA CATGAAAATCCCGCTCGTCGTCCGCCTGGAAGGCACCAACGTGGAAATCGGCAAGAAAATCCTCGCAGACAGCGGCATCG CCATCATCCCTGCCGACAACCTGGACGAAGCCGCCCAGAAAGCGGTGGCAGCAGTCAAATAA
Upstream 100 bases:
>100_bases CCGGACAAAAAATCAAAAGACCAAACCATTCTCCCTTGACCGACACCAAAAATAGGCCTAGCCTTTCTTCCGCAAACATT TGGCCAAACGGCCCACTGTC
Downstream 100 bases:
>100_bases CCCTCACTATTTATTACGACAATGACATCTCTCATTGACAAGAACACTCGTCTGGTCGTGCAAGGCATCACCGGCAGCGC CGGCGCATTCCACGCCAAAA
Product: succinyl-CoA synthetase, beta subunit
Products: NA
Alternate protein names: Succinyl-CoA synthetase subunit beta; SCS-beta
Number of amino acids: Translated: 393; Mature: 393
Protein sequence:
>393_residues MNIHEYQAKQLFERFGVATPKGIAASTAQEAAQTARNMGLSQYVVKAQVHAGGRGKGTFKNGFKGGVHVVKSVEEVEEVA GKMLNQVLVTKQTGEAGKLVSKIMVAEAVDLKKECYFAILQDRARECPVIVASTEGGMDIEEVAATRPEAIIREHINPAL GILPFQALKIAVALELTGPLLRQATKLITNVYKLFTALDCSLVEINPLVVTTDDRVCALDAKFNFDDNALYRHPEIMEMR DETEEDPREVEAGKYDLNYIGLDGNIGCMVNGAGLAMATMDIIKYYGGEPANFLDVGGSATEEMVTNAFRILTSDKNVKA LLVNIFGGIMRCDVIAQGIVAAAKNIDMKIPLVVRLEGTNVEIGKKILADSGIAIIPADNLDEAAQKAVAAVK
Sequences:
>Translated_393_residues MNIHEYQAKQLFERFGVATPKGIAASTAQEAAQTARNMGLSQYVVKAQVHAGGRGKGTFKNGFKGGVHVVKSVEEVEEVA GKMLNQVLVTKQTGEAGKLVSKIMVAEAVDLKKECYFAILQDRARECPVIVASTEGGMDIEEVAATRPEAIIREHINPAL GILPFQALKIAVALELTGPLLRQATKLITNVYKLFTALDCSLVEINPLVVTTDDRVCALDAKFNFDDNALYRHPEIMEMR DETEEDPREVEAGKYDLNYIGLDGNIGCMVNGAGLAMATMDIIKYYGGEPANFLDVGGSATEEMVTNAFRILTSDKNVKA LLVNIFGGIMRCDVIAQGIVAAAKNIDMKIPLVVRLEGTNVEIGKKILADSGIAIIPADNLDEAAQKAVAAVK >Mature_393_residues MNIHEYQAKQLFERFGVATPKGIAASTAQEAAQTARNMGLSQYVVKAQVHAGGRGKGTFKNGFKGGVHVVKSVEEVEEVA GKMLNQVLVTKQTGEAGKLVSKIMVAEAVDLKKECYFAILQDRARECPVIVASTEGGMDIEEVAATRPEAIIREHINPAL GILPFQALKIAVALELTGPLLRQATKLITNVYKLFTALDCSLVEINPLVVTTDDRVCALDAKFNFDDNALYRHPEIMEMR DETEEDPREVEAGKYDLNYIGLDGNIGCMVNGAGLAMATMDIIKYYGGEPANFLDVGGSATEEMVTNAFRILTSDKNVKA LLVNIFGGIMRCDVIAQGIVAAAKNIDMKIPLVVRLEGTNVEIGKKILADSGIAIIPADNLDEAAQKAVAAVK
Specific function: Tricarboxylic acid cycle. [C]
COG id: COG0045
COG function: function code C; Succinyl-CoA synthetase, beta subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ATP-grasp domain
Homologues:
Organism=Homo sapiens, GI11321583, Length=389, Percent_Identity=51.6709511568123, Blast_Score=409, Evalue=1e-114, Organism=Homo sapiens, GI157779135, Length=383, Percent_Identity=50.9138381201044, Blast_Score=381, Evalue=1e-106, Organism=Homo sapiens, GI294862256, Length=362, Percent_Identity=51.3812154696133, Blast_Score=364, Evalue=1e-101, Organism=Escherichia coli, GI1786948, Length=393, Percent_Identity=51.9083969465649, Blast_Score=394, Evalue=1e-111, Organism=Caenorhabditis elegans, GI17539378, Length=394, Percent_Identity=52.0304568527919, Blast_Score=404, Evalue=1e-113, Organism=Caenorhabditis elegans, GI17567829, Length=388, Percent_Identity=48.9690721649485, Blast_Score=376, Evalue=1e-105, Organism=Saccharomyces cerevisiae, GI6321683, Length=392, Percent_Identity=48.7244897959184, Blast_Score=393, Evalue=1e-110, Organism=Drosophila melanogaster, GI161078106, Length=389, Percent_Identity=52.6992287917738, Blast_Score=401, Evalue=1e-112, Organism=Drosophila melanogaster, GI24645208, Length=389, Percent_Identity=52.6992287917738, Blast_Score=401, Evalue=1e-112, Organism=Drosophila melanogaster, GI281361397, Length=393, Percent_Identity=52.4173027989822, Blast_Score=397, Evalue=1e-111, Organism=Drosophila melanogaster, GI281361395, Length=393, Percent_Identity=52.4173027989822, Blast_Score=397, Evalue=1e-111, Organism=Drosophila melanogaster, GI21356231, Length=393, Percent_Identity=50.381679389313, Blast_Score=387, Evalue=1e-108, Organism=Drosophila melanogaster, GI24658419, Length=69, Percent_Identity=46.3768115942029, Blast_Score=75, Evalue=1e-13,
Paralogues:
None
Copy number: 340 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2361 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 3,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SUCC_AKKM8 (B2UMH5)
Other databases:
- EMBL: CP001071 - RefSeq: YP_001878312.1 - ProteinModelPortal: B2UMH5 - SMR: B2UMH5 - GeneID: 6274528 - GenomeReviews: CP001071_GR - KEGG: amu:Amuc_1713 - HOGENOM: HBG315432 - OMA: TDRVTLM - HAMAP: MF_00558 - InterPro: IPR011761 - InterPro: IPR013650 - InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR005811 - InterPro: IPR017866 - InterPro: IPR005809 - InterPro: IPR016102 - Gene3D: G3DSA:3.30.1490.20 - Gene3D: G3DSA:3.30.470.20 - Gene3D: G3DSA:3.40.50.261 - PANTHER: PTHR11815 - TIGRFAMs: TIGR01016
Pfam domain/function: PF08442 ATP-grasp_2; PF00549 Ligase_CoA; SSF52210 CoA_ligase
EC number: =6.2.1.5
Molecular weight: Translated: 42341; Mature: 42341
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: PS50975 ATP_GRASP; PS01217 SUCCINYL_COA_LIG_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIHEYQAKQLFERFGVATPKGIAASTAQEAAQTARNMGLSQYVVKAQVHAGGRGKGTFK CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHEEEECCCCCCCCCCC NGFKGGVHVVKSVEEVEEVAGKMLNQVLVTKQTGEAGKLVSKIMVAEAVDLKKECYFAIL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH QDRARECPVIVASTEGGMDIEEVAATRPEAIIREHINPALGILPFQALKIAVALELTGPL HHHHCCCCEEEEECCCCCCHHHHHHCCHHHHHHHHCCHHHHHCHHHHHHEEEEEECCCHH LRQATKLITNVYKLFTALDCSLVEINPLVVTTDDRVCALDAKFNFDDNALYRHPEIMEMR HHHHHHHHHHHHHHHHHHCCEEEEECEEEEECCCCEEEEEEECCCCCCCEECCCHHHHHH DETEEDPREVEAGKYDLNYIGLDGNIGCMVNGAGLAMATMDIIKYYGGEPANFLDVGGSA HCCCCCCHHHCCCCEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEECCCCH TEEMVTNAFRILTSDKNVKALLVNIFGGIMRCDVIAQGIVAAAKNIDMKIPLVVRLEGTN HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECEEEEEEECCC VEIGKKILADSGIAIIPADNLDEAAQKAVAAVK CHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCC >Mature Secondary Structure MNIHEYQAKQLFERFGVATPKGIAASTAQEAAQTARNMGLSQYVVKAQVHAGGRGKGTFK CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHEEEECCCCCCCCCCC NGFKGGVHVVKSVEEVEEVAGKMLNQVLVTKQTGEAGKLVSKIMVAEAVDLKKECYFAIL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH QDRARECPVIVASTEGGMDIEEVAATRPEAIIREHINPALGILPFQALKIAVALELTGPL HHHHCCCCEEEEECCCCCCHHHHHHCCHHHHHHHHCCHHHHHCHHHHHHEEEEEECCCHH LRQATKLITNVYKLFTALDCSLVEINPLVVTTDDRVCALDAKFNFDDNALYRHPEIMEMR HHHHHHHHHHHHHHHHHHCCEEEEECEEEEECCCCEEEEEEECCCCCCCEECCCHHHHHH DETEEDPREVEAGKYDLNYIGLDGNIGCMVNGAGLAMATMDIIKYYGGEPANFLDVGGSA HCCCCCCHHHCCCCEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEECCCCH TEEMVTNAFRILTSDKNVKALLVNIFGGIMRCDVIAQGIVAAAKNIDMKIPLVVRLEGTN HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECEEEEEEECCC VEIGKKILADSGIAIIPADNLDEAAQKAVAAVK CHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA