Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is cca [H]
Identifier: 187736125
GI number: 187736125
Start: 1975844
End: 1977238
Strand: Direct
Name: cca [H]
Synonym: Amuc_1636
Alternate gene names: 187736125
Gene position: 1975844-1977238 (Clockwise)
Preceding gene: 187736124
Following gene: 187736126
Centisome position: 74.17
GC content: 56.56
Gene sequence:
>1395_bases ATGATCCGTTTCATGGAGGGGATTCTGTTGAGAAAGGCCGCGGAGGACGTGGCCCGGGTTCTTTCCGGAGCAGGACACAC CGTATATTTTGTGGGCGGCTGTGTTCGGGACAGGTTGCTGGGATATTCCGTGAAGGATATCGATATTGCCACCTCCGCCC GCCCGGATGAAGTGTTGCGCCTGTTTCCGGATGCCTGGGAAGTGGGCGCCGCCTTCGGCGTGGTGCTGGTACGCCGCGAA GGTTTTTCCTTTGAGGTGGCGACCTTCCGCAGAGACGGAAGCTACAGGGATGGCCGGAGGCCGGAGGACGTCTGTTTCAC GGATGCGGAAGAAGATGCCCGGCGGCGTGATTTTACCATGAACGGCCTCTTTGAAGATCCGTTTTCTTCGCCTCCGGGCC GTGTGGTGGATTATGTAGGCGGAGTGGAGGATATCCGGGCCCGCGTATTGAGGTGCATCGGGGAGCCGGACCGTCGTTTT GAAGAAGATTCCCTGCGGCTGATGCGCGCCGTACGTTTTGCCGTTACTAGGGAAGTTCAGGTGGAGAAGGAGACTTGCTC CTCCATTTTCAGGAACGCTCCGCTGCTGGCCCGGATTTCCCCGGAACGCATCCGGGAGGAACTGGACAGGATTTTATTGT CTCCCGGAAGGAAACGGGGTGTGGAAATGCTGGTGGAAACGGGGTTGATGAAGCATGTCATTCCGGAAATATACGATATG ATAGGCTGTACGCAACCTCCCCAATGGCATCCGGAAGGAGACGTATACACCCATACGCTGATGATGCTGGATGCGCTGGG AAGGGACGGCTCCCCCGTGTCTTTGAAGCTGGCCCTGGGGGTTCTGCTGCATGACATCGGGAAACCTCCCTGCCGTCAGG TGGATGAAACGGGGCGCATCCGTTTTTCCGGTCATGACAAGGAAGGTTCTTCCATGGCCAGGGTCATTTTAAGAAGGCTG AAATATTCCAATGCCGTGGTGGATGCGGTGTGTTCCATGGTGGAGCGCCATATGCGCTTCATCAACGTGAGGCAGATGAG GAAATCTACGCTGCGAATGTTCATGAACGCTCCTCATTTCCGGGATGAACTGGAACTCCACCGCCTGGATTGCCTTTCCT CCAACGGACTGATGGACAACTGGCAATTTGTCAGGGACTTCATGGATTCCTACCGGAATGCCCCTCTGGTTCCTCCTCCT CTGGTGACCGGGCGTGATCTGGTGAATCTGGGGCTGTCCCCGGGGCCTGATTTCGGGAAATGGCTGTCCCGTCTGCAGGA ACTTCAGTTGGAGGGAACGCTCCGGACCAGGGAGGAAGCCCTGCTGCAGCTGGGACAAATTGCCCCGGTGGAACAGAATG CGCTTGCAGAATACCTGAAAAAGTTAGCATTATAA
Upstream 100 bases:
>100_bases CTGTTTCCCGGCCTGATAGGCCGCGGCCCGCGTTCCCTTCCGCCCCCTCCGGTGCGGAGGACCATTCTCTTTCCGCTCCT CCTTTGAGGCCCATGCCTGA
Downstream 100 bases:
>100_bases GCGTCAAAATTTGATTATTTCAACTCATGCGTCCTGTCATTTATCAACTATTTGTTCGTCATTTTTCCAATATGGAGACC CATGGAGTTGACTGGGGGAG
Product: polynucleotide adenylyltransferase/metal dependent phosphohydrolase
Products: NA
Alternate protein names: tRNA CCA-pyrophosphorylase; tRNA adenylyl-/cytidylyl- transferase; tRNA nucleotidyltransferase; tRNA-NT [H]
Number of amino acids: Translated: 464; Mature: 464
Protein sequence:
>464_residues MIRFMEGILLRKAAEDVARVLSGAGHTVYFVGGCVRDRLLGYSVKDIDIATSARPDEVLRLFPDAWEVGAAFGVVLVRRE GFSFEVATFRRDGSYRDGRRPEDVCFTDAEEDARRRDFTMNGLFEDPFSSPPGRVVDYVGGVEDIRARVLRCIGEPDRRF EEDSLRLMRAVRFAVTREVQVEKETCSSIFRNAPLLARISPERIREELDRILLSPGRKRGVEMLVETGLMKHVIPEIYDM IGCTQPPQWHPEGDVYTHTLMMLDALGRDGSPVSLKLALGVLLHDIGKPPCRQVDETGRIRFSGHDKEGSSMARVILRRL KYSNAVVDAVCSMVERHMRFINVRQMRKSTLRMFMNAPHFRDELELHRLDCLSSNGLMDNWQFVRDFMDSYRNAPLVPPP LVTGRDLVNLGLSPGPDFGKWLSRLQELQLEGTLRTREEALLQLGQIAPVEQNALAEYLKKLAL
Sequences:
>Translated_464_residues MIRFMEGILLRKAAEDVARVLSGAGHTVYFVGGCVRDRLLGYSVKDIDIATSARPDEVLRLFPDAWEVGAAFGVVLVRRE GFSFEVATFRRDGSYRDGRRPEDVCFTDAEEDARRRDFTMNGLFEDPFSSPPGRVVDYVGGVEDIRARVLRCIGEPDRRF EEDSLRLMRAVRFAVTREVQVEKETCSSIFRNAPLLARISPERIREELDRILLSPGRKRGVEMLVETGLMKHVIPEIYDM IGCTQPPQWHPEGDVYTHTLMMLDALGRDGSPVSLKLALGVLLHDIGKPPCRQVDETGRIRFSGHDKEGSSMARVILRRL KYSNAVVDAVCSMVERHMRFINVRQMRKSTLRMFMNAPHFRDELELHRLDCLSSNGLMDNWQFVRDFMDSYRNAPLVPPP LVTGRDLVNLGLSPGPDFGKWLSRLQELQLEGTLRTREEALLQLGQIAPVEQNALAEYLKKLAL >Mature_464_residues MIRFMEGILLRKAAEDVARVLSGAGHTVYFVGGCVRDRLLGYSVKDIDIATSARPDEVLRLFPDAWEVGAAFGVVLVRRE GFSFEVATFRRDGSYRDGRRPEDVCFTDAEEDARRRDFTMNGLFEDPFSSPPGRVVDYVGGVEDIRARVLRCIGEPDRRF EEDSLRLMRAVRFAVTREVQVEKETCSSIFRNAPLLARISPERIREELDRILLSPGRKRGVEMLVETGLMKHVIPEIYDM IGCTQPPQWHPEGDVYTHTLMMLDALGRDGSPVSLKLALGVLLHDIGKPPCRQVDETGRIRFSGHDKEGSSMARVILRRL KYSNAVVDAVCSMVERHMRFINVRQMRKSTLRMFMNAPHFRDELELHRLDCLSSNGLMDNWQFVRDFMDSYRNAPLVPPP LVTGRDLVNLGLSPGPDFGKWLSRLQELQLEGTLRTREEALLQLGQIAPVEQNALAEYLKKLAL
Specific function: Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing
COG id: COG0617
COG function: function code J; tRNA nucleotidyltransferase/poly(A) polymerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. Bacterial CCA-adding enzyme type 3 subfamily [H]
Homologues:
Organism=Homo sapiens, GI155030240, Length=240, Percent_Identity=32.5, Blast_Score=110, Evalue=3e-24, Organism=Escherichia coli, GI87081691, Length=228, Percent_Identity=39.0350877192982, Blast_Score=132, Evalue=5e-32, Organism=Escherichia coli, GI1789436, Length=322, Percent_Identity=31.055900621118, Blast_Score=116, Evalue=2e-27, Organism=Caenorhabditis elegans, GI71995920, Length=202, Percent_Identity=33.6633663366337, Blast_Score=99, Evalue=7e-21, Organism=Saccharomyces cerevisiae, GI6321016, Length=489, Percent_Identity=23.1083844580777, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI281360112, Length=311, Percent_Identity=31.5112540192926, Blast_Score=111, Evalue=1e-24, Organism=Drosophila melanogaster, GI21357337, Length=311, Percent_Identity=31.5112540192926, Blast_Score=111, Evalue=1e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023068 - InterPro: IPR002646 [H]
Pfam domain/function: PF01743 PolyA_pol [H]
EC number: =2.7.7.21; =2.7.7.25 [H]
Molecular weight: Translated: 52748; Mature: 52748
Theoretical pI: Translated: 7.23; Mature: 7.23
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRFMEGILLRKAAEDVARVLSGAGHTVYFVGGCVRDRLLGYSVKDIDIATSARPDEVLR CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCEEECCCCCHHHHHH LFPDAWEVGAAFGVVLVRREGFSFEVATFRRDGSYRDGRRPEDVCFTDAEEDARRRDFTM HCCCHHHHHHHHHHHEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCC NGLFEDPFSSPPGRVVDYVGGVEDIRARVLRCIGEPDRRFEEDSLRLMRAVRFAVTREVQ CCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHH VEKETCSSIFRNAPLLARISPERIREELDRILLSPGRKRGVEMLVETGLMKHVIPEIYDM HHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH IGCTQPPQWHPEGDVYTHTLMMLDALGRDGSPVSLKLALGVLLHDIGKPPCRQVDETGRI HCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCCCHHCCCCCCCE RFSGHDKEGSSMARVILRRLKYSNAVVDAVCSMVERHMRFINVRQMRKSTLRMFMNAPHF EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC RDELELHRLDCLSSNGLMDNWQFVRDFMDSYRNAPLVPPPLVTGRDLVNLGLSPGPDFGK HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCHHH WLSRLQELQLEGTLRTREEALLQLGQIAPVEQNALAEYLKKLAL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure MIRFMEGILLRKAAEDVARVLSGAGHTVYFVGGCVRDRLLGYSVKDIDIATSARPDEVLR CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCEEECCCCCHHHHHH LFPDAWEVGAAFGVVLVRREGFSFEVATFRRDGSYRDGRRPEDVCFTDAEEDARRRDFTM HCCCHHHHHHHHHHHEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCC NGLFEDPFSSPPGRVVDYVGGVEDIRARVLRCIGEPDRRFEEDSLRLMRAVRFAVTREVQ CCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHH VEKETCSSIFRNAPLLARISPERIREELDRILLSPGRKRGVEMLVETGLMKHVIPEIYDM HHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH IGCTQPPQWHPEGDVYTHTLMMLDALGRDGSPVSLKLALGVLLHDIGKPPCRQVDETGRI HCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCCCHHCCCCCCCE RFSGHDKEGSSMARVILRRLKYSNAVVDAVCSMVERHMRFINVRQMRKSTLRMFMNAPHF EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC RDELELHRLDCLSSNGLMDNWQFVRDFMDSYRNAPLVPPPLVTGRDLVNLGLSPGPDFGK HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCHHH WLSRLQELQLEGTLRTREEALLQLGQIAPVEQNALAEYLKKLAL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA