Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187736126
Identifier: 187736126
GI number: 187736126
Start: 1977310
End: 1979034
Strand: Direct
Name: 187736126
Synonym: Amuc_1637
Alternate gene names: NA
Gene position: 1977310-1979034 (Clockwise)
Preceding gene: 187736125
Following gene: 187736127
Centisome position: 74.22
GC content: 57.97
Gene sequence:
>1725_bases ATGGAGACCCATGGAGTTGACTGGGGGAGCCGGGAAACGAACGGGTGCGGAACTTTTAATGGAGTGACGGATAAAGCCTT ACGTGAAATAGCACGGATGGGTTTCACACACATCTGGCTGACCGGGGTATTGAGGCACGCTACGCAGACGGCCCATCCCG GGCTGGCCGCCCAGCCGGAATCCATCGTAAAAGGCCTGGCAGGAAGTCCCTATGCCGTGGTGGATTATTTTGACGTGGAT CCGGACCTGGCCTCCTCCCCGGAGAAGAGAATGGATGAGTTCAAGGCTCTGGTAAAGCGTTGCCGGACGGTGGGGCTGCT GCCGATGATGGATTTTATTCCCAACCATGTTTCCCGAGCCTACCTGGCGGACTGGGACGGGCATGACGATTTTGGAGAAG GAGATGATCCCCATACGTTTTTTTCTCCGGAGCAGGGGTACTTTTACCTGACCTCCAACAGCCTTGGGGACGGTCCACCC CTGCGTCTGCCGGACGGCCTGTTTGAAGGGGAAATGACGTTCGGCCGTGTGACGGGCAACAATGCCGTTACATGGAATCC CGGCAAGTACGACTGGTATGAAACGGTCAAGCTCAACTACGGCTATAACTTTATGGCCGGTCTTCCTGCCCTCCGCCTGT TGCCGGGGTGGACCAGCCCCAAGCAGCATGTGCCCAAGACATGGCGCATCATGGACGATATCCTTTCCTTCTGGCAAAGC CTGGGCATCGGCGGTTTCAGGTGCGACATGGCCCAAATGATCCCCATGGCTTTCTGGAAATGGGCCATTTCCCGTTCCCG GGTGCGTCTGCCGGACGTGTTTTTCATGGCGGAGGCATACAACGACCACATGAAAACCACACCCGGCGATCCGTGCGCCG CCCTTCTGGATGCCGGATTTAATGCCGTTTACGATTCCGACTGCTATCATCTGGCGCTCCATATGTACACGGAAAATAAC TGGGCCAATGACTTCGACCGGCTTTTCCGAAGCAATCCCATATACATGACCCACGGCGTCCGCTACGTGGAAAACCATGA TGAAACGCGCGTGTGCTCCCCTCTTTCCTGGGGCGGCGTGGGGCGCGTTGTTCTGCCGGCGGTCATGACGCTGGTGTATG CCTCCGGGAGCGGTCCCGTGCTGGTGTACAACGGGCAGGAAGTGGGGGAACGGGCGGAGGGGCCCGGCGGTTTCGGCGGA CATGACGGGCGTACCAGTATTTTTGACTATACCTGCCTCCCCCGGCTCCAGCCCTGGGTGGCGGATGGCCGGTTTGACTC TTCCCTGTTGCCGGAAGAGTCCGCAGAACTGAGAAATTTTCATCGGAAGCTTCTTCCTCTGATGCAGCATCCGGCGCTGG ACCGGGGAGATTTTTACGGCCTGAACTGGGCTAATATGAAAAACACCACTTTCGGCAGGGAACCGGCGGAAGACACTTCC GGCCACTGGGTATATGCCATGCTCCGGCATGATGCCCGCGCCAGGGCCACCGTGCTTGTGGTGGGGAACCTTTCTCCAAA TATCAATTTCTACAACCTGCGCATTTCCATTCCCCAGCACGCTTTCGGCTGGTGCGGCATCCAGACGGATCGGGTACGCG TCAGAAACCTGATGGACGCCGAGGGTGAGGACAGGATTTTTGAGCGGCGGGAATTGATGGACTGCGGTCTGTCCCATCCC CTGAAACCGGGACATGTGGGCGTGCTGGAACTGTCTGCCGTTTAG
Upstream 100 bases:
>100_bases CAGAATACCTGAAAAAGTTAGCATTATAAGCGTCAAAATTTGATTATTTCAACTCATGCGTCCTGTCATTTATCAACTAT TTGTTCGTCATTTTTCCAAT
Downstream 100 bases:
>100_bases AGAAGCGTTCCCTCCGGAGGGAAGCTGCAGCCTTTGCCGATATTTTTTACTCTGCTGGGCGTTTTTATGATGACGGGCGG TTTTTAATTCGGTATAGTCC
Product: alpha amylase catalytic region
Products: NA
Alternate protein names: Glycosidase; Alpha-Amylase Family Protein; Alpha-Amylase; Alpha Amylase; Glycoside Hydrolase Family Alpha-Glucosidase; Alpha Amylase Family Protein; Alpha Amylase Domain-Containing Protein; Alpha Amylase Catalytic Subunit; LOW QUALITY PROTEIN Alpha-Amylase Family Protein
Number of amino acids: Translated: 574; Mature: 574
Protein sequence:
>574_residues METHGVDWGSRETNGCGTFNGVTDKALREIARMGFTHIWLTGVLRHATQTAHPGLAAQPESIVKGLAGSPYAVVDYFDVD PDLASSPEKRMDEFKALVKRCRTVGLLPMMDFIPNHVSRAYLADWDGHDDFGEGDDPHTFFSPEQGYFYLTSNSLGDGPP LRLPDGLFEGEMTFGRVTGNNAVTWNPGKYDWYETVKLNYGYNFMAGLPALRLLPGWTSPKQHVPKTWRIMDDILSFWQS LGIGGFRCDMAQMIPMAFWKWAISRSRVRLPDVFFMAEAYNDHMKTTPGDPCAALLDAGFNAVYDSDCYHLALHMYTENN WANDFDRLFRSNPIYMTHGVRYVENHDETRVCSPLSWGGVGRVVLPAVMTLVYASGSGPVLVYNGQEVGERAEGPGGFGG HDGRTSIFDYTCLPRLQPWVADGRFDSSLLPEESAELRNFHRKLLPLMQHPALDRGDFYGLNWANMKNTTFGREPAEDTS GHWVYAMLRHDARARATVLVVGNLSPNINFYNLRISIPQHAFGWCGIQTDRVRVRNLMDAEGEDRIFERRELMDCGLSHP LKPGHVGVLELSAV
Sequences:
>Translated_574_residues METHGVDWGSRETNGCGTFNGVTDKALREIARMGFTHIWLTGVLRHATQTAHPGLAAQPESIVKGLAGSPYAVVDYFDVD PDLASSPEKRMDEFKALVKRCRTVGLLPMMDFIPNHVSRAYLADWDGHDDFGEGDDPHTFFSPEQGYFYLTSNSLGDGPP LRLPDGLFEGEMTFGRVTGNNAVTWNPGKYDWYETVKLNYGYNFMAGLPALRLLPGWTSPKQHVPKTWRIMDDILSFWQS LGIGGFRCDMAQMIPMAFWKWAISRSRVRLPDVFFMAEAYNDHMKTTPGDPCAALLDAGFNAVYDSDCYHLALHMYTENN WANDFDRLFRSNPIYMTHGVRYVENHDETRVCSPLSWGGVGRVVLPAVMTLVYASGSGPVLVYNGQEVGERAEGPGGFGG HDGRTSIFDYTCLPRLQPWVADGRFDSSLLPEESAELRNFHRKLLPLMQHPALDRGDFYGLNWANMKNTTFGREPAEDTS GHWVYAMLRHDARARATVLVVGNLSPNINFYNLRISIPQHAFGWCGIQTDRVRVRNLMDAEGEDRIFERRELMDCGLSHP LKPGHVGVLELSAV >Mature_574_residues METHGVDWGSRETNGCGTFNGVTDKALREIARMGFTHIWLTGVLRHATQTAHPGLAAQPESIVKGLAGSPYAVVDYFDVD PDLASSPEKRMDEFKALVKRCRTVGLLPMMDFIPNHVSRAYLADWDGHDDFGEGDDPHTFFSPEQGYFYLTSNSLGDGPP LRLPDGLFEGEMTFGRVTGNNAVTWNPGKYDWYETVKLNYGYNFMAGLPALRLLPGWTSPKQHVPKTWRIMDDILSFWQS LGIGGFRCDMAQMIPMAFWKWAISRSRVRLPDVFFMAEAYNDHMKTTPGDPCAALLDAGFNAVYDSDCYHLALHMYTENN WANDFDRLFRSNPIYMTHGVRYVENHDETRVCSPLSWGGVGRVVLPAVMTLVYASGSGPVLVYNGQEVGERAEGPGGFGG HDGRTSIFDYTCLPRLQPWVADGRFDSSLLPEESAELRNFHRKLLPLMQHPALDRGDFYGLNWANMKNTTFGREPAEDTS GHWVYAMLRHDARARATVLVVGNLSPNINFYNLRISIPQHAFGWCGIQTDRVRVRNLMDAEGEDRIFERRELMDCGLSHP LKPGHVGVLELSAV
Specific function: Unknown
COG id: COG0366
COG function: function code G; Glycosidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64478; Mature: 64478
Theoretical pI: Translated: 6.06; Mature: 6.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METHGVDWGSRETNGCGTFNGVTDKALREIARMGFTHIWLTGVLRHATQTAHPGLAAQPE CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHH SIVKGLAGSPYAVVDYFDVDPDLASSPEKRMDEFKALVKRCRTVGLLPMMDFIPNHVSRA HHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH YLADWDGHDDFGEGDDPHTFFSPEQGYFYLTSNSLGDGPPLRLPDGLFEGEMTFGRVTGN EEECCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECC NAVTWNPGKYDWYETVKLNYGYNFMAGLPALRLLPGWTSPKQHVPKTWRIMDDILSFWQS CEEEECCCCCCCEEEEEEECCCCHHHHCCHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHH LGIGGFRCDMAQMIPMAFWKWAISRSRVRLPDVFFMAEAYNDHMKTTPGDPCAALLDAGF HCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHCCCCCCCCCCHHHHHHHCCC NAVYDSDCYHLALHMYTENNWANDFDRLFRSNPIYMTHGVRYVENHDETRVCSPLSWGGV CEEECCCCEEEEEEEEECCCCCHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCCC GRVVLPAVMTLVYASGSGPVLVYNGQEVGERAEGPGGFGGHDGRTSIFDYTCLPRLQPWV CHHHHHHHHHHHEECCCCCEEEECCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCHH ADGRFDSSLLPEESAELRNFHRKLLPLMQHPALDRGDFYGLNWANMKNTTFGREPAEDTS CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GHWVYAMLRHDARARATVLVVGNLSPNINFYNLRISIPQHAFGWCGIQTDRVRVRNLMDA CCEEEEEECCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCEECCCCHHHHHHHHHHCC EGEDRIFERRELMDCGLSHPLKPGHVGVLELSAV CCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECC >Mature Secondary Structure METHGVDWGSRETNGCGTFNGVTDKALREIARMGFTHIWLTGVLRHATQTAHPGLAAQPE CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHH SIVKGLAGSPYAVVDYFDVDPDLASSPEKRMDEFKALVKRCRTVGLLPMMDFIPNHVSRA HHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH YLADWDGHDDFGEGDDPHTFFSPEQGYFYLTSNSLGDGPPLRLPDGLFEGEMTFGRVTGN EEECCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECC NAVTWNPGKYDWYETVKLNYGYNFMAGLPALRLLPGWTSPKQHVPKTWRIMDDILSFWQS CEEEECCCCCCCEEEEEEECCCCHHHHCCHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHH LGIGGFRCDMAQMIPMAFWKWAISRSRVRLPDVFFMAEAYNDHMKTTPGDPCAALLDAGF HCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHCCCCCCCCCCHHHHHHHCCC NAVYDSDCYHLALHMYTENNWANDFDRLFRSNPIYMTHGVRYVENHDETRVCSPLSWGGV CEEECCCCEEEEEEEEECCCCCHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCCC GRVVLPAVMTLVYASGSGPVLVYNGQEVGERAEGPGGFGGHDGRTSIFDYTCLPRLQPWV CHHHHHHHHHHHEECCCCCEEEECCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCHH ADGRFDSSLLPEESAELRNFHRKLLPLMQHPALDRGDFYGLNWANMKNTTFGREPAEDTS CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GHWVYAMLRHDARARATVLVVGNLSPNINFYNLRISIPQHAFGWCGIQTDRVRVRNLMDA CCEEEEEECCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCEECCCCHHHHHHHHHHCC EGEDRIFERRELMDCGLSHPLKPGHVGVLELSAV CCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA