Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is vanX [H]
Identifier: 187736116
GI number: 187736116
Start: 1961324
End: 1962064
Strand: Direct
Name: vanX [H]
Synonym: Amuc_1627
Alternate gene names: 187736116
Gene position: 1961324-1962064 (Clockwise)
Preceding gene: 187736115
Following gene: 187736117
Centisome position: 73.62
GC content: 53.71
Gene sequence:
>741_bases ATGAAGACTTGCGTAGCTGCGGTATGCAGCATGTTCATGTTACTGGTTTCCTGTTCCGGCAGCAGGGAATTCAAACCGGC GTTCAATCAGCCCCTTCAGCCCGTGATGCAGCCGGGCTTTGTGTATGTGGATCAGGTGGCTCCGCTGGTGAAGACTAATT TGAAATATGCCGGGTATGACAATTTTGTAGGGCGTCCGCTGGACGGTTACCACGGTCGGCGCGCCATCCTGCGCACCCAG GCGGCGCAGGCGTTGAAAAAAGTCTCGGAAGATTTGTATCGTCAGGGTTACCTGCTGGAAATTTATGACGCCTACCGTCC CCATACCGCCGTGCTGGACATTTGCAAATGGGGAGCTGACGACGGGGACCAAAAGATGAAGTCCCGGTATTATCCCCATA TTGACAAGGCCAAGGTGTTCGGAGACCACTATGTGCGCGATTTTTCGGAACATTCCCGGGGTGTGGCTGTGGATGTTTCC CTGCTGTACGCCAAGACCGGAAAGCCGGTGGATATGGGCGGCCATCATGACCTGCTGGATCCCAGTTCCACCACAGACTC CACATTAGTGACTCCGTCCCAACGCAGAAACAGGATGATTCTGAAAACGGCTTTTGAAAAACAGGGTTTTGCCAATTATG CTCCGGAATGGTGGCACTATCGCCTGTTGAATGAGCCTGAACCTACCCTGCATTATTACTTTCCCGTGTGGGACGGCATG ACTTCCGCGGGCAGGCCATAA
Upstream 100 bases:
>100_bases AGCTGCGCCATCCCACGCGCATCAGCAAGATCAAGGGATTCCTGGAAATGACGGAATCCTAACCGGATTTGCGCCGCATG CCGTGCTACGCTTTGTGGTC
Downstream 100 bases:
>100_bases AAAAATTTTACATATCAAATTTTGTAAAAATTTGTTTGTTAGCTGAGTGGTCGGCTCCGTGCTGATTCCTATCAAGCAGA ATGTAGAAGATCGTACTGAC
Product: peptidase M15D vanX D-ala-D-ala dipeptidase
Products: NA
Alternate protein names: D-Ala-D-Ala dipeptidase [H]
Number of amino acids: Translated: 246; Mature: 246
Protein sequence:
>246_residues MKTCVAAVCSMFMLLVSCSGSREFKPAFNQPLQPVMQPGFVYVDQVAPLVKTNLKYAGYDNFVGRPLDGYHGRRAILRTQ AAQALKKVSEDLYRQGYLLEIYDAYRPHTAVLDICKWGADDGDQKMKSRYYPHIDKAKVFGDHYVRDFSEHSRGVAVDVS LLYAKTGKPVDMGGHHDLLDPSSTTDSTLVTPSQRRNRMILKTAFEKQGFANYAPEWWHYRLLNEPEPTLHYYFPVWDGM TSAGRP
Sequences:
>Translated_246_residues MKTCVAAVCSMFMLLVSCSGSREFKPAFNQPLQPVMQPGFVYVDQVAPLVKTNLKYAGYDNFVGRPLDGYHGRRAILRTQ AAQALKKVSEDLYRQGYLLEIYDAYRPHTAVLDICKWGADDGDQKMKSRYYPHIDKAKVFGDHYVRDFSEHSRGVAVDVS LLYAKTGKPVDMGGHHDLLDPSSTTDSTLVTPSQRRNRMILKTAFEKQGFANYAPEWWHYRLLNEPEPTLHYYFPVWDGM TSAGRP >Mature_246_residues MKTCVAAVCSMFMLLVSCSGSREFKPAFNQPLQPVMQPGFVYVDQVAPLVKTNLKYAGYDNFVGRPLDGYHGRRAILRTQ AAQALKKVSEDLYRQGYLLEIYDAYRPHTAVLDICKWGADDGDQKMKSRYYPHIDKAKVFGDHYVRDFSEHSRGVAVDVS LLYAKTGKPVDMGGHHDLLDPSSTTDSTLVTPSQRRNRMILKTAFEKQGFANYAPEWWHYRLLNEPEPTLHYYFPVWDGM TSAGRP
Specific function: Hydrolyzes the cellular pool of D-Ala-D-Ala dipeptides. May play a role in immunity or defense against glycopeptide antibiotics (perhaps at a moderate level) in the soil environment. Might confer vancomycin resistance to S.coelicolor [H]
COG id: COG2173
COG function: function code M; D-alanyl-D-alanine dipeptidase
Gene ontology:
Cell location: Secreted (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M15D family [H]
Homologues:
Organism=Escherichia coli, GI1787763, Length=180, Percent_Identity=32.2222222222222, Blast_Score=78, Evalue=5e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009045 - InterPro: IPR000755 [H]
Pfam domain/function: PF01427 Peptidase_M15 [H]
EC number: =3.4.13.22 [H]
Molecular weight: Translated: 28010; Mature: 28010
Theoretical pI: Translated: 8.77; Mature: 8.77
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTCVAAVCSMFMLLVSCSGSREFKPAFNQPLQPVMQPGFVYVDQVAPLVKTNLKYAGYD CCHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHHHCCCCEEHHHHHHHHHHCCCCCCCC NFVGRPLDGYHGRRAILRTQAAQALKKVSEDLYRQGYLLEIYDAYRPHTAVLDICKWGAD CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHCCHHHHHHHHHCCCC DGDQKMKSRYYPHIDKAKVFGDHYVRDFSEHSRGVAVDVSLLYAKTGKPVDMGGHHDLLD CCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCC PSSTTDSTLVTPSQRRNRMILKTAFEKQGFANYAPEWWHYRLLNEPEPTLHYYFPVWDGM CCCCCCCEEECCHHHHCEEHHHHHHHHCCCCCCCCCHHEEEECCCCCCCEEEEEECCCCC TSAGRP CCCCCC >Mature Secondary Structure MKTCVAAVCSMFMLLVSCSGSREFKPAFNQPLQPVMQPGFVYVDQVAPLVKTNLKYAGYD CCHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHHHCCCCEEHHHHHHHHHHCCCCCCCC NFVGRPLDGYHGRRAILRTQAAQALKKVSEDLYRQGYLLEIYDAYRPHTAVLDICKWGAD CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHCCHHHHHHHHHCCCC DGDQKMKSRYYPHIDKAKVFGDHYVRDFSEHSRGVAVDVSLLYAKTGKPVDMGGHHDLLD CCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCC PSSTTDSTLVTPSQRRNRMILKTAFEKQGFANYAPEWWHYRLLNEPEPTLHYYFPVWDGM CCCCCCCEEECCHHHHCEEHHHHHHHHCCCCCCCCCHHEEEECCCCCCCEEEEEECCCCC TSAGRP CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11881895; 12000953 [H]