Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is nqo1 [H]
Identifier: 187736101
GI number: 187736101
Start: 1937703
End: 1939103
Strand: Reverse
Name: nqo1 [H]
Synonym: Amuc_1612
Alternate gene names: 187736101
Gene position: 1939103-1937703 (Counterclockwise)
Preceding gene: 187736102
Following gene: 187736100
Centisome position: 72.79
GC content: 58.67
Gene sequence:
>1401_bases ATGAGCATCACCTATCTTCCCGGTAAAGAACCCCACCCCAGGGAAACGCGCCGCATTCTGAAAAACGTCAACCGCGAGGG CTGGAATACCTCCATTGACTGCTATCTGGCCGACGGCGGTTATGAAGAACTGAAAAAGGCGCTCGGCATGGAGCCCAGGG CCGTCATTGACGAGGTGAAAAAATCCGGTCTTCGCGGCCGTGGCGGCGCGGGGTTCCCCACCGGCGTGAAATGGACCTTC ATTCCGCCGAACAACACGAAGCCTGTTTACCTGGTTTGCAACTGTGACGAATCCGAACCAGGCACGTTCAAGGACCGCTA CATTGTCCATCAGGATCCCCACCAGCTCATTGAAGGAATGGTCATCTCCAGCTACGCGGTGGGAGCGCATCAGGCTTACA TCTACATGCGCGAAGAATTTCCCATCGCCGCGGAAATCATGCTCAAAGCCCTTCAGGAAGCTCGCGAACGCGGCTTCCTG GGCAGCAATATCCAGGGGTCCGGCTATAATCTGGAAATCCACCTGCACCGCGGAGCGGGAGCGTACATTTGCGGTGAGGA AACGGCCCTGCTCAACTCCCTTGAAGGGGATCGCCCCTATCCCCGCATCAAGCCCCCCTACTTCCCGGCCGCCATCGGCC TGTACGGATGCCCCACCATTGTCAACAACGTGGAATCCCTCTGCCAGGTGAAACACATCATGGCCATGGGAGGAGAAGCC TACAGCCAGGAAGGAGCCAAACGTTCCCCCGGCACCCGCATCATCGGGGTTTCCGGCGACGTCAAACGTCCTGGGTTCTA TGAAATCGTCTCCGGCTCCATGACCTTCGGTGAACTGCTGTATGACGTCTGCGGCGGCCCGCGGGACGGGCGCCAGTTCA AGGCCGTGATACCCGGAGGCTCCTCCTCCAAGGTCATGCGCACGGATGCGGAATACAAAGTGCAGAATCCGGACGGCACC ATGGGAAAAATCACCTTTTTCGACATTCCGCTGGATCTGGACAGCATCGCCCGGCACGGCTCCATGTCCGGTTCCGGCGC GGTCATCGTCATGGACGACTCCCGCTCCATGCCCTGGGCCATGAACAACATCAACCGTTTCTACGCCCATGAATCCTGCG GGCAGTGCACTCCCTGCCGGGAAGGCTGTCCGTGGATGATGAAACTCAGCACCCGCATCCTGGAAGGAAAAGCCGCCCCG TCGGATGTGGATCTGCTCATTGAAGTGGCCAACCAGATTGAAGGAAAAACGGTCTGCGCCTTTGGTGAAGCCGCCTCCTG GCCCACCCAGGCCATGGTCTCCAAATTCAAGGAAGAATTCGTAGCCCTGACGGATCCATTCAACGCCTGTCTGCCCCACA CGGAGGAAGGCAGGGAGCAAAACCGTTTCCTCACCCGCTAA
Upstream 100 bases:
>100_bases TCTCCTGTACGAAAAAGTCACTCCGGAAGTGCTGGAAGAAGTGATTGCCAAATATCAGACAGCCTAACCCTTTCCATTTC CCACGCACCAGATTTTCGCC
Downstream 100 bases:
>100_bases ACAGCAGCACGCAACACCAGTTCTCAAAACCATCCCTCTCCATCCGTCATCATGAGTGAAGAAGCTTCCAAACTCCCCAA AGACATTGCCGCCGCGGAAG
Product: NADH dehydrogenase (quinone)
Products: NA
Alternate protein names: NADH dehydrogenase I chain 1; NDH-1 subunit 1 [H]
Number of amino acids: Translated: 466; Mature: 465
Protein sequence:
>466_residues MSITYLPGKEPHPRETRRILKNVNREGWNTSIDCYLADGGYEELKKALGMEPRAVIDEVKKSGLRGRGGAGFPTGVKWTF IPPNNTKPVYLVCNCDESEPGTFKDRYIVHQDPHQLIEGMVISSYAVGAHQAYIYMREEFPIAAEIMLKALQEARERGFL GSNIQGSGYNLEIHLHRGAGAYICGEETALLNSLEGDRPYPRIKPPYFPAAIGLYGCPTIVNNVESLCQVKHIMAMGGEA YSQEGAKRSPGTRIIGVSGDVKRPGFYEIVSGSMTFGELLYDVCGGPRDGRQFKAVIPGGSSSKVMRTDAEYKVQNPDGT MGKITFFDIPLDLDSIARHGSMSGSGAVIVMDDSRSMPWAMNNINRFYAHESCGQCTPCREGCPWMMKLSTRILEGKAAP SDVDLLIEVANQIEGKTVCAFGEAASWPTQAMVSKFKEEFVALTDPFNACLPHTEEGREQNRFLTR
Sequences:
>Translated_466_residues MSITYLPGKEPHPRETRRILKNVNREGWNTSIDCYLADGGYEELKKALGMEPRAVIDEVKKSGLRGRGGAGFPTGVKWTF IPPNNTKPVYLVCNCDESEPGTFKDRYIVHQDPHQLIEGMVISSYAVGAHQAYIYMREEFPIAAEIMLKALQEARERGFL GSNIQGSGYNLEIHLHRGAGAYICGEETALLNSLEGDRPYPRIKPPYFPAAIGLYGCPTIVNNVESLCQVKHIMAMGGEA YSQEGAKRSPGTRIIGVSGDVKRPGFYEIVSGSMTFGELLYDVCGGPRDGRQFKAVIPGGSSSKVMRTDAEYKVQNPDGT MGKITFFDIPLDLDSIARHGSMSGSGAVIVMDDSRSMPWAMNNINRFYAHESCGQCTPCREGCPWMMKLSTRILEGKAAP SDVDLLIEVANQIEGKTVCAFGEAASWPTQAMVSKFKEEFVALTDPFNACLPHTEEGREQNRFLTR >Mature_465_residues SITYLPGKEPHPRETRRILKNVNREGWNTSIDCYLADGGYEELKKALGMEPRAVIDEVKKSGLRGRGGAGFPTGVKWTFI PPNNTKPVYLVCNCDESEPGTFKDRYIVHQDPHQLIEGMVISSYAVGAHQAYIYMREEFPIAAEIMLKALQEARERGFLG SNIQGSGYNLEIHLHRGAGAYICGEETALLNSLEGDRPYPRIKPPYFPAAIGLYGCPTIVNNVESLCQVKHIMAMGGEAY SQEGAKRSPGTRIIGVSGDVKRPGFYEIVSGSMTFGELLYDVCGGPRDGRQFKAVIPGGSSSKVMRTDAEYKVQNPDGTM GKITFFDIPLDLDSIARHGSMSGSGAVIVMDDSRSMPWAMNNINRFYAHESCGQCTPCREGCPWMMKLSTRILEGKAAPS DVDLLIEVANQIEGKTVCAFGEAASWPTQAMVSKFKEEFVALTDPFNACLPHTEEGREQNRFLTR
Specific function: NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is menaquinone. Couples the redox reaction to proton translocation (for every
COG id: COG1894
COG function: function code C; NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the complex I 51 kDa subunit family [H]
Homologues:
Organism=Homo sapiens, GI20149568, Length=430, Percent_Identity=42.7906976744186, Blast_Score=338, Evalue=9e-93, Organism=Homo sapiens, GI260656005, Length=430, Percent_Identity=42.7906976744186, Blast_Score=337, Evalue=1e-92, Organism=Escherichia coli, GI1788620, Length=443, Percent_Identity=42.8893905191874, Blast_Score=352, Evalue=2e-98, Organism=Caenorhabditis elegans, GI17531727, Length=407, Percent_Identity=44.7174447174447, Blast_Score=347, Evalue=1e-95, Organism=Drosophila melanogaster, GI19920794, Length=426, Percent_Identity=43.4272300469484, Blast_Score=347, Evalue=1e-95, Organism=Drosophila melanogaster, GI45550452, Length=424, Percent_Identity=41.0377358490566, Blast_Score=313, Evalue=1e-85, Organism=Drosophila melanogaster, GI24653819, Length=429, Percent_Identity=32.4009324009324, Blast_Score=216, Evalue=2e-56, Organism=Drosophila melanogaster, GI24653817, Length=369, Percent_Identity=31.4363143631436, Blast_Score=181, Evalue=1e-45,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001949 - InterPro: IPR019575 - InterPro: IPR011537 - InterPro: IPR011538 - InterPro: IPR019554 [H]
Pfam domain/function: PF01512 Complex1_51K; PF10589 NADH_4Fe-4S; PF10531 SLBB [H]
EC number: =1.6.99.5 [H]
Molecular weight: Translated: 51350; Mature: 51219
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00644 COMPLEX1_51K_1 ; PS00645 COMPLEX1_51K_2 ; PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSITYLPGKEPHPRETRRILKNVNREGWNTSIDCYLADGGYEELKKALGMEPRAVIDEVK CEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHCCCHHHHHHHHH KSGLRGRGGAGFPTGVKWTFIPPNNTKPVYLVCNCDESEPGTFKDRYIVHQDPHQLIEGM HCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCEEEECCHHHHHHHH VISSYAVGAHQAYIYMREEFPIAAEIMLKALQEARERGFLGSNIQGSGYNLEIHLHRGAG HHHHEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCC AYICGEETALLNSLEGDRPYPRIKPPYFPAAIGLYGCPTIVNNVESLCQVKHIMAMGGEA EEEECCHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHH YSQEGAKRSPGTRIIGVSGDVKRPGFYEIVSGSMTFGELLYDVCGGPRDGRQFKAVIPGG HHHCCCCCCCCCEEEECCCCCCCCCHHEEECCCCHHHHHHHHHHCCCCCCCEEEEEECCC SSSKVMRTDAEYKVQNPDGTMGKITFFDIPLDLDSIARHGSMSGSGAVIVMDDSRSMPWA CCCCEEECCCCEEEECCCCCEEEEEEEECCCCHHHHHHCCCCCCCCEEEEEECCCCCCHH MNNINRFYAHESCGQCTPCREGCPWMMKLSTRILEGKAAPSDVDLLIEVANQIEGKTVCA HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEE FGEAASWPTQAMVSKFKEEFVALTDPFNACLPHTEEGREQNRFLTR ECCCCCCCHHHHHHHHHHHHEECCCCHHHHCCCCCCCCHHHCCCCC >Mature Secondary Structure SITYLPGKEPHPRETRRILKNVNREGWNTSIDCYLADGGYEELKKALGMEPRAVIDEVK EEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHCCCHHHHHHHHH KSGLRGRGGAGFPTGVKWTFIPPNNTKPVYLVCNCDESEPGTFKDRYIVHQDPHQLIEGM HCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCEEEECCHHHHHHHH VISSYAVGAHQAYIYMREEFPIAAEIMLKALQEARERGFLGSNIQGSGYNLEIHLHRGAG HHHHEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCC AYICGEETALLNSLEGDRPYPRIKPPYFPAAIGLYGCPTIVNNVESLCQVKHIMAMGGEA EEEECCHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHH YSQEGAKRSPGTRIIGVSGDVKRPGFYEIVSGSMTFGELLYDVCGGPRDGRQFKAVIPGG HHHCCCCCCCCCEEEECCCCCCCCCHHEEECCCCHHHHHHHHHHCCCCCCCEEEEEECCC SSSKVMRTDAEYKVQNPDGTMGKITFFDIPLDLDSIARHGSMSGSGAVIVMDDSRSMPWA CCCCEEECCCCEEEECCCCCEEEEEEEECCCCHHHHHHCCCCCCCCEEEEEECCCCCCHH MNNINRFYAHESCGQCTPCREGCPWMMKLSTRILEGKAAPSDVDLLIEVANQIEGKTVCA HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEE FGEAASWPTQAMVSKFKEEFVALTDPFNACLPHTEEGREQNRFLTR ECCCCCCCHHHHHHHHHHHHEECCCCHHHHCCCCCCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9020134 [H]