Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is nuoH [H]
Identifier: 187736099
GI number: 187736099
Start: 1934611
End: 1935879
Strand: Reverse
Name: nuoH [H]
Synonym: Amuc_1610
Alternate gene names: 187736099
Gene position: 1935879-1934611 (Counterclockwise)
Preceding gene: 187736100
Following gene: 187736098
Centisome position: 72.67
GC content: 56.9
Gene sequence:
>1269_bases ATGATTGATTCGATTCTAACCTTTTGCGACGAGGTGCTCAGCAACCCTGTGTGGTTTTATATCATCACTCTGCTGATCAA AATCGTCATCTGCTTTGCCATCACCATTCTGTTCATTCCGGTCTGCGTGTACATTGAACGCCGGGTGGCCGCCTGGATCC AGGACCGCGTAGGCCCCAACCGCGCCGGCATTCCGTTAAGCATCTTCCGCCGCTTCGGCATGAAATCCGACCTGCCGTTC AAAAAGACGCTGGACTACTTCGGGTTGCCCCATGACGGCAAAATCGCCAACCTGTGCCGTTTTTTCCGCCTGGACCGCGA CATCCCCATCTTCGGTCTCGTGCAGCCCATGGTGGACGGCGGCAAACTGTTCCTGAAACAGGATTTCACGCCCCCCTTCG TACGCCGCGTATACTTCTGGATCGCTCCCATCCTGGTGCTTGCGCCACCGCTGATGACGGCGGCCGTGGTTCCCTTCGCC GGAGACCTTCAAACCTCTTACGGAAACGTCAACATGGCGGTGGCCAACCTCAGCGTAGGCCCCCTCTGGATGTTCGCCAT CTCCTCCCTCTCCGTGTACGGACTGGTGCTGGCCGGATGGTCATCCAACTCCAAATTCCCCTTCCTGGGCGGCGTGCGCT CCTCAGCCCAGATGATTTCCTATGAAATCAGCATGGGTCTGTCCATCATCCCTGTGCTGATGATTTACAGCACGCTGGAC CTGTCCAACATCGTGGAATACCAGGCCGCCAACGGCTGGCTCCTGCTTCCCGTGTGGGGCGAGGGCCTGAGCTGGCAGCG CTGGATACTGCTGGTGCCCGTAGCTATCAGTTTCATCATATTCCTCACCTCCATTTTTGCGGAAGCCAACCGTACGCCGT TTGACATGTCCGAATGTGAAACGGACCTCGTGGGCGGCTACCATACGGAATACTCCTCCATGAAATTCGCCCAATTCTTC ATGGGGGAATATGCCGCCATGGTGGTGGGATCCTCCCTTGTCATCACGCTGTTCCTGGGGGGCTGGTCCATCGGCTTCGG CCTGGACGGCTGGCTCAATGAAAACGTAGCCAACTGGGTGGCGGTCATCTGCCAGCTCATCGCATATGTGCTCAAGCTTC TCTTCTTCGCCTTCTTCTTCGTCTGGGTGCGGTGGACGCTCCCCCGCTTCCGCTATGACCAGGTGATGAAGCTCGGCTGG ATGGTCTTCTTTGAACTGGCCGTCATCAACATCTTCCTTACAGCCGCCATCCTGTACTTCGTCAAGTAA
Upstream 100 bases:
>100_bases AGCCCATTCTGGAAACCGGCGTCACCATTCCCGTGGTGGAACGCGAAAAAAACCAGGGCCGCTAATCACACTTCACACGC ATACAACCTGTTAATCCGCC
Downstream 100 bases:
>100_bases TCCCCCCCTTCTTCATTCCGACAACATTACTATTATGGCCTTCAAAACGATCAAGCGTCCGAAGATTTCCCTTGGAGAGC GGTTCTATCTGCAATCCATT
Product: NADH dehydrogenase (quinone)
Products: NA
Alternate protein names: NADH dehydrogenase I subunit H; NDH-1 subunit H [H]
Number of amino acids: Translated: 422; Mature: 422
Protein sequence:
>422_residues MIDSILTFCDEVLSNPVWFYIITLLIKIVICFAITILFIPVCVYIERRVAAWIQDRVGPNRAGIPLSIFRRFGMKSDLPF KKTLDYFGLPHDGKIANLCRFFRLDRDIPIFGLVQPMVDGGKLFLKQDFTPPFVRRVYFWIAPILVLAPPLMTAAVVPFA GDLQTSYGNVNMAVANLSVGPLWMFAISSLSVYGLVLAGWSSNSKFPFLGGVRSSAQMISYEISMGLSIIPVLMIYSTLD LSNIVEYQAANGWLLLPVWGEGLSWQRWILLVPVAISFIIFLTSIFAEANRTPFDMSECETDLVGGYHTEYSSMKFAQFF MGEYAAMVVGSSLVITLFLGGWSIGFGLDGWLNENVANWVAVICQLIAYVLKLLFFAFFFVWVRWTLPRFRYDQVMKLGW MVFFELAVINIFLTAAILYFVK
Sequences:
>Translated_422_residues MIDSILTFCDEVLSNPVWFYIITLLIKIVICFAITILFIPVCVYIERRVAAWIQDRVGPNRAGIPLSIFRRFGMKSDLPF KKTLDYFGLPHDGKIANLCRFFRLDRDIPIFGLVQPMVDGGKLFLKQDFTPPFVRRVYFWIAPILVLAPPLMTAAVVPFA GDLQTSYGNVNMAVANLSVGPLWMFAISSLSVYGLVLAGWSSNSKFPFLGGVRSSAQMISYEISMGLSIIPVLMIYSTLD LSNIVEYQAANGWLLLPVWGEGLSWQRWILLVPVAISFIIFLTSIFAEANRTPFDMSECETDLVGGYHTEYSSMKFAQFF MGEYAAMVVGSSLVITLFLGGWSIGFGLDGWLNENVANWVAVICQLIAYVLKLLFFAFFFVWVRWTLPRFRYDQVMKLGW MVFFELAVINIFLTAAILYFVK >Mature_422_residues MIDSILTFCDEVLSNPVWFYIITLLIKIVICFAITILFIPVCVYIERRVAAWIQDRVGPNRAGIPLSIFRRFGMKSDLPF KKTLDYFGLPHDGKIANLCRFFRLDRDIPIFGLVQPMVDGGKLFLKQDFTPPFVRRVYFWIAPILVLAPPLMTAAVVPFA GDLQTSYGNVNMAVANLSVGPLWMFAISSLSVYGLVLAGWSSNSKFPFLGGVRSSAQMISYEISMGLSIIPVLMIYSTLD LSNIVEYQAANGWLLLPVWGEGLSWQRWILLVPVAISFIIFLTSIFAEANRTPFDMSECETDLVGGYHTEYSSMKFAQFF MGEYAAMVVGSSLVITLFLGGWSIGFGLDGWLNENVANWVAVICQLIAYVLKLLFFAFFFVWVRWTLPRFRYDQVMKLGW MVFFELAVINIFLTAAILYFVK
Specific function: NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocat
COG id: COG1005
COG function: function code C; NADH:ubiquinone oxidoreductase subunit 1 (chain H)
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the complex I subunit 1 family [H]
Homologues:
Organism=Homo sapiens, GI251831107, Length=300, Percent_Identity=31.6666666666667, Blast_Score=145, Evalue=9e-35, Organism=Escherichia coli, GI1788618, Length=404, Percent_Identity=31.9306930693069, Blast_Score=186, Evalue=2e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023020 - InterPro: IPR001694 - InterPro: IPR018086 [H]
Pfam domain/function: PF00146 NADHdh [H]
EC number: =1.6.99.5 [H]
Molecular weight: Translated: 47781; Mature: 47781
Theoretical pI: Translated: 7.75; Mature: 7.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDSILTFCDEVLSNPVWFYIITLLIKIVICFAITILFIPVCVYIERRVAAWIQDRVGPN CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RAGIPLSIFRRFGMKSDLPFKKTLDYFGLPHDGKIANLCRFFRLDRDIPIFGLVQPMVDG CCCCCHHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCC GKLFLKQDFTPPFVRRVYFWIAPILVLAPPLMTAAVVPFAGDLQTSYGNVNMAVANLSVG CEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCC PLWMFAISSLSVYGLVLAGWSSNSKFPFLGGVRSSAQMISYEISMGLSIIPVLMIYSTLD HHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHC LSNIVEYQAANGWLLLPVWGEGLSWQRWILLVPVAISFIIFLTSIFAEANRTPFDMSECE HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH TDLVGGYHTEYSSMKFAQFFMGEYAAMVVGSSLVITLFLGGWSIGFGLDGWLNENVANWV HHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEECCCCCCHHCCHHHHHH AVICQLIAYVLKLLFFAFFFVWVRWTLPRFRYDQVMKLGWMVFFELAVINIFLTAAILYF HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VK CC >Mature Secondary Structure MIDSILTFCDEVLSNPVWFYIITLLIKIVICFAITILFIPVCVYIERRVAAWIQDRVGPN CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RAGIPLSIFRRFGMKSDLPFKKTLDYFGLPHDGKIANLCRFFRLDRDIPIFGLVQPMVDG CCCCCHHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCC GKLFLKQDFTPPFVRRVYFWIAPILVLAPPLMTAAVVPFAGDLQTSYGNVNMAVANLSVG CEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCC PLWMFAISSLSVYGLVLAGWSSNSKFPFLGGVRSSAQMISYEISMGLSIIPVLMIYSTLD HHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHC LSNIVEYQAANGWLLLPVWGEGLSWQRWILLVPVAISFIIFLTSIFAEANRTPFDMSECE HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH TDLVGGYHTEYSSMKFAQFFMGEYAAMVVGSSLVITLFLGGWSIGFGLDGWLNENVANWV HHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEECCCCCCHHCCHHHHHH AVICQLIAYVLKLLFFAFFFVWVRWTLPRFRYDQVMKLGWMVFFELAVINIFLTAAILYF HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VK CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA