Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is nuoI [H]
Identifier: 187736098
GI number: 187736098
Start: 1934013
End: 1934576
Strand: Reverse
Name: nuoI [H]
Synonym: Amuc_1609
Alternate gene names: 187736098
Gene position: 1934576-1934013 (Counterclockwise)
Preceding gene: 187736099
Following gene: 187736097
Centisome position: 72.62
GC content: 55.85
Gene sequence:
>564_bases ATGGCCTTCAAAACGATCAAGCGTCCGAAGATTTCCCTTGGAGAGCGGTTCTATCTGCAATCCATTCTTGGCGGTCTTTG GCTCACTATCAGGCATCTCGTTCTGGCTCTGCTGGGCAAATCCCGCAACAAAAAAGAACTGGCCGGTTCCGGCATCGGCG TTACGATGCAATATCCGGAAGCCAGATGGGACAAACATCTGCCGAAATATTACCGCGGAGCTCCCGTGCTGGTGAAAGGC GAAGACGGCCGTGAACGCTGCGTTTCCTGCCAGCTCTGCGAATTCATCTGCCCGGCCCGCGCCATCACCATCACCCCCGG CCCCATACAGGAAGGACCGTGGGGCAAAGTGGAAAAAGCCCCCAGGGAATTTCAGATTGACATGCTGCGCTGCATCTACT GCGGCATGTGCGAGGAAGCCTGCCCGGAACAGGCCATCTTCATGAGCCATAACTACCTGTTCACCCCCACGGATAAAACC CAGGCCATCCACAACAAGGCCAAGCTCTACGAACTGGGCGGCACCCGCAAGGGGCTGGTCAACAAGTGGAACCAATACAA ATAA
Upstream 100 bases:
>100_bases GTCTTCTTTGAACTGGCCGTCATCAACATCTTCCTTACAGCCGCCATCCTGTACTTCGTCAAGTAATCCCCCCCTTCTTC ATTCCGACAACATTACTATT
Downstream 100 bases:
>100_bases CCCCCGAACACTCCATTTCCCGTACGTTATGAACATCTTTGCCAGCGACATACTTTTTTACGTTTTCGGGGCCCTGGCCG TGGTCCTGTCCCTGATGGTC
Product: 4Fe-4S ferredoxin iron-sulfur binding domain protein
Products: NA
Alternate protein names: NADH dehydrogenase I subunit I; NDH-1 subunit I [H]
Number of amino acids: Translated: 187; Mature: 186
Protein sequence:
>187_residues MAFKTIKRPKISLGERFYLQSILGGLWLTIRHLVLALLGKSRNKKELAGSGIGVTMQYPEARWDKHLPKYYRGAPVLVKG EDGRERCVSCQLCEFICPARAITITPGPIQEGPWGKVEKAPREFQIDMLRCIYCGMCEEACPEQAIFMSHNYLFTPTDKT QAIHNKAKLYELGGTRKGLVNKWNQYK
Sequences:
>Translated_187_residues MAFKTIKRPKISLGERFYLQSILGGLWLTIRHLVLALLGKSRNKKELAGSGIGVTMQYPEARWDKHLPKYYRGAPVLVKG EDGRERCVSCQLCEFICPARAITITPGPIQEGPWGKVEKAPREFQIDMLRCIYCGMCEEACPEQAIFMSHNYLFTPTDKT QAIHNKAKLYELGGTRKGLVNKWNQYK >Mature_186_residues AFKTIKRPKISLGERFYLQSILGGLWLTIRHLVLALLGKSRNKKELAGSGIGVTMQYPEARWDKHLPKYYRGAPVLVKGE DGRERCVSCQLCEFICPARAITITPGPIQEGPWGKVEKAPREFQIDMLRCIYCGMCEEACPEQAIFMSHNYLFTPTDKTQ AIHNKAKLYELGGTRKGLVNKWNQYK
Specific function: NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocat
COG id: COG1143
COG function: function code C; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]
Homologues:
Organism=Homo sapiens, GI4505371, Length=120, Percent_Identity=39.1666666666667, Blast_Score=88, Evalue=5e-18, Organism=Escherichia coli, GI1788617, Length=133, Percent_Identity=35.3383458646617, Blast_Score=84, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17555194, Length=123, Percent_Identity=38.2113821138211, Blast_Score=85, Evalue=2e-17, Organism=Drosophila melanogaster, GI17864306, Length=116, Percent_Identity=38.7931034482759, Blast_Score=85, Evalue=3e-17,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001450 - InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR012285 - InterPro: IPR010226 [H]
Pfam domain/function: PF00037 Fer4 [H]
EC number: =1.6.99.5 [H]
Molecular weight: Translated: 21294; Mature: 21163
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 7.0 %Cys+Met (Translated Protein) 4.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFKTIKRPKISLGERFYLQSILGGLWLTIRHLVLALLGKSRNKKELAGSGIGVTMQYPE CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEECCH ARWDKHLPKYYRGAPVLVKGEDGRERCVSCQLCEFICPARAITITPGPIQEGPWGKVEKA HHHHHCCHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC PREFQIDMLRCIYCGMCEEACPEQAIFMSHNYLFTPTDKTQAIHNKAKLYELGGTRKGLV CHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEECCCCHHHHHHHHHHHHCCCCCCCHHH NKWNQYK HHHCCCC >Mature Secondary Structure AFKTIKRPKISLGERFYLQSILGGLWLTIRHLVLALLGKSRNKKELAGSGIGVTMQYPE CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEECCH ARWDKHLPKYYRGAPVLVKGEDGRERCVSCQLCEFICPARAITITPGPIQEGPWGKVEKA HHHHHCCHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC PREFQIDMLRCIYCGMCEEACPEQAIFMSHNYLFTPTDKTQAIHNKAKLYELGGTRKGLV CHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEECCCCHHHHHHHHHHHHCCCCCCCHHH NKWNQYK HHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA