Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is nuoJ [H]

Identifier: 187736097

GI number: 187736097

Start: 1933274

End: 1933984

Strand: Reverse

Name: nuoJ [H]

Synonym: Amuc_1608

Alternate gene names: 187736097

Gene position: 1933984-1933274 (Counterclockwise)

Preceding gene: 187736098

Following gene: 187736096

Centisome position: 72.59

GC content: 59.21

Gene sequence:

>711_bases
ATGAACATCTTTGCCAGCGACATACTTTTTTACGTTTTCGGGGCCCTGGCCGTGGTCCTGTCCCTGATGGTCGTCTTCAT
GCGCAACCCCGTCTCCTCCGCCATGATGATGGCTCTTTCCTTTGGAGCCACCGCCGCCGTCATGATCGGGCTGGGAGCCC
ACTTCCTGGGCATTCTCCAAATCCTTGTATACGCCGGGGCCATTATGGTGCTCTTCGCGTTCATCATCATGCTGCTGAAT
GTGAAGCAGGAAACATCCCCCTTCAGCAGGCCTTTCTCCGTCGCTATCGGTATCATCATCGCCGGCCTCTTCCTCGGCCA
GCTTATTGGCATCATCTATTCTTTGCCTGGCGCCAAAGAAACGCACCGCTGCCCGATGGCCAGCGCGGAACAGGCCTGGA
ACGATTTGAAAATCGGGCAGGAGGACGCAGCCCCCTCCAAAACCGGAATGGAAACTCCCGCCTGCGGCCTTCGCAACAAC
GGCGCCCCTTCCGTCATTCTCCCCCCCCTCTCCCCCCAATGTTCCGCCCACCTCTATCCGGAAGGCACCACCATCCGTGA
GGAGATAGACAACGGAGAATTCCCGGACACCGCCCTGCTGGGCCGTACCCTGTTTGACAAATACAACCGGAGCCTGGTCA
TCGCCGGTCTGGCCCTGCTGGTGGCTTCCATCGGCGTCGTCGTGCTGAGCCGCCGCCCTTCCGGAAAATAA

Upstream 100 bases:

>100_bases
AACAAGGCCAAGCTCTACGAACTGGGCGGCACCCGCAAGGGGCTGGTCAACAAGTGGAACCAATACAAATAACCCCCGAA
CACTCCATTTCCCGTACGTT

Downstream 100 bases:

>100_bases
AGAACCCCTTACCACAGCCATCACCATGATACCTCTTACGCATTATCTGATCCTCTCCGGCGTCCTGTTCGCCATCGGCC
TGATGGGGGTGATTGTCCGG

Product: NADH-ubiquinone/plastoquinone oxidoreductase chain 6

Products: NA

Alternate protein names: NADH dehydrogenase I subunit J; NDH-1 subunit J [H]

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MNIFASDILFYVFGALAVVLSLMVVFMRNPVSSAMMMALSFGATAAVMIGLGAHFLGILQILVYAGAIMVLFAFIIMLLN
VKQETSPFSRPFSVAIGIIIAGLFLGQLIGIIYSLPGAKETHRCPMASAEQAWNDLKIGQEDAAPSKTGMETPACGLRNN
GAPSVILPPLSPQCSAHLYPEGTTIREEIDNGEFPDTALLGRTLFDKYNRSLVIAGLALLVASIGVVVLSRRPSGK

Sequences:

>Translated_236_residues
MNIFASDILFYVFGALAVVLSLMVVFMRNPVSSAMMMALSFGATAAVMIGLGAHFLGILQILVYAGAIMVLFAFIIMLLN
VKQETSPFSRPFSVAIGIIIAGLFLGQLIGIIYSLPGAKETHRCPMASAEQAWNDLKIGQEDAAPSKTGMETPACGLRNN
GAPSVILPPLSPQCSAHLYPEGTTIREEIDNGEFPDTALLGRTLFDKYNRSLVIAGLALLVASIGVVVLSRRPSGK
>Mature_236_residues
MNIFASDILFYVFGALAVVLSLMVVFMRNPVSSAMMMALSFGATAAVMIGLGAHFLGILQILVYAGAIMVLFAFIIMLLN
VKQETSPFSRPFSVAIGIIIAGLFLGQLIGIIYSLPGAKETHRCPMASAEQAWNDLKIGQEDAAPSKTGMETPACGLRNN
GAPSVILPPLSPQCSAHLYPEGTTIREEIDNGEFPDTALLGRTLFDKYNRSLVIAGLALLVASIGVVVLSRRPSGK

Specific function: NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocat

COG id: COG0839

COG function: function code C; NADH:ubiquinone oxidoreductase subunit 6 (chain J)

Gene ontology:

Cell location: Cellular chromatophore membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I subunit 6 family [H]

Homologues:

Organism=Escherichia coli, GI1788616, Length=116, Percent_Identity=37.9310344827586, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001457 [H]

Pfam domain/function: PF00499 Oxidored_q3 [H]

EC number: =1.6.99.5 [H]

Molecular weight: Translated: 25104; Mature: 25104

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIFASDILFYVFGALAVVLSLMVVFMRNPVSSAMMMALSFGATAAVMIGLGAHFLGILQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
ILVYAGAIMVLFAFIIMLLNVKQETSPFSRPFSVAIGIIIAGLFLGQLIGIIYSLPGAKE
HHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
THRCPMASAEQAWNDLKIGQEDAAPSKTGMETPACGLRNNGAPSVILPPLSPQCSAHLYP
CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEECC
EGTTIREEIDNGEFPDTALLGRTLFDKYNRSLVIAGLALLVASIGVVVLSRRPSGK
CCCHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNIFASDILFYVFGALAVVLSLMVVFMRNPVSSAMMMALSFGATAAVMIGLGAHFLGILQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
ILVYAGAIMVLFAFIIMLLNVKQETSPFSRPFSVAIGIIIAGLFLGQLIGIIYSLPGAKE
HHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
THRCPMASAEQAWNDLKIGQEDAAPSKTGMETPACGLRNNGAPSVILPPLSPQCSAHLYP
CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEECC
EGTTIREEIDNGEFPDTALLGRTLFDKYNRSLVIAGLALLVASIGVVVLSRRPSGK
CCCHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8566820 [H]