Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is nuoJ [H]
Identifier: 187736097
GI number: 187736097
Start: 1933274
End: 1933984
Strand: Reverse
Name: nuoJ [H]
Synonym: Amuc_1608
Alternate gene names: 187736097
Gene position: 1933984-1933274 (Counterclockwise)
Preceding gene: 187736098
Following gene: 187736096
Centisome position: 72.59
GC content: 59.21
Gene sequence:
>711_bases ATGAACATCTTTGCCAGCGACATACTTTTTTACGTTTTCGGGGCCCTGGCCGTGGTCCTGTCCCTGATGGTCGTCTTCAT GCGCAACCCCGTCTCCTCCGCCATGATGATGGCTCTTTCCTTTGGAGCCACCGCCGCCGTCATGATCGGGCTGGGAGCCC ACTTCCTGGGCATTCTCCAAATCCTTGTATACGCCGGGGCCATTATGGTGCTCTTCGCGTTCATCATCATGCTGCTGAAT GTGAAGCAGGAAACATCCCCCTTCAGCAGGCCTTTCTCCGTCGCTATCGGTATCATCATCGCCGGCCTCTTCCTCGGCCA GCTTATTGGCATCATCTATTCTTTGCCTGGCGCCAAAGAAACGCACCGCTGCCCGATGGCCAGCGCGGAACAGGCCTGGA ACGATTTGAAAATCGGGCAGGAGGACGCAGCCCCCTCCAAAACCGGAATGGAAACTCCCGCCTGCGGCCTTCGCAACAAC GGCGCCCCTTCCGTCATTCTCCCCCCCCTCTCCCCCCAATGTTCCGCCCACCTCTATCCGGAAGGCACCACCATCCGTGA GGAGATAGACAACGGAGAATTCCCGGACACCGCCCTGCTGGGCCGTACCCTGTTTGACAAATACAACCGGAGCCTGGTCA TCGCCGGTCTGGCCCTGCTGGTGGCTTCCATCGGCGTCGTCGTGCTGAGCCGCCGCCCTTCCGGAAAATAA
Upstream 100 bases:
>100_bases AACAAGGCCAAGCTCTACGAACTGGGCGGCACCCGCAAGGGGCTGGTCAACAAGTGGAACCAATACAAATAACCCCCGAA CACTCCATTTCCCGTACGTT
Downstream 100 bases:
>100_bases AGAACCCCTTACCACAGCCATCACCATGATACCTCTTACGCATTATCTGATCCTCTCCGGCGTCCTGTTCGCCATCGGCC TGATGGGGGTGATTGTCCGG
Product: NADH-ubiquinone/plastoquinone oxidoreductase chain 6
Products: NA
Alternate protein names: NADH dehydrogenase I subunit J; NDH-1 subunit J [H]
Number of amino acids: Translated: 236; Mature: 236
Protein sequence:
>236_residues MNIFASDILFYVFGALAVVLSLMVVFMRNPVSSAMMMALSFGATAAVMIGLGAHFLGILQILVYAGAIMVLFAFIIMLLN VKQETSPFSRPFSVAIGIIIAGLFLGQLIGIIYSLPGAKETHRCPMASAEQAWNDLKIGQEDAAPSKTGMETPACGLRNN GAPSVILPPLSPQCSAHLYPEGTTIREEIDNGEFPDTALLGRTLFDKYNRSLVIAGLALLVASIGVVVLSRRPSGK
Sequences:
>Translated_236_residues MNIFASDILFYVFGALAVVLSLMVVFMRNPVSSAMMMALSFGATAAVMIGLGAHFLGILQILVYAGAIMVLFAFIIMLLN VKQETSPFSRPFSVAIGIIIAGLFLGQLIGIIYSLPGAKETHRCPMASAEQAWNDLKIGQEDAAPSKTGMETPACGLRNN GAPSVILPPLSPQCSAHLYPEGTTIREEIDNGEFPDTALLGRTLFDKYNRSLVIAGLALLVASIGVVVLSRRPSGK >Mature_236_residues MNIFASDILFYVFGALAVVLSLMVVFMRNPVSSAMMMALSFGATAAVMIGLGAHFLGILQILVYAGAIMVLFAFIIMLLN VKQETSPFSRPFSVAIGIIIAGLFLGQLIGIIYSLPGAKETHRCPMASAEQAWNDLKIGQEDAAPSKTGMETPACGLRNN GAPSVILPPLSPQCSAHLYPEGTTIREEIDNGEFPDTALLGRTLFDKYNRSLVIAGLALLVASIGVVVLSRRPSGK
Specific function: NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocat
COG id: COG0839
COG function: function code C; NADH:ubiquinone oxidoreductase subunit 6 (chain J)
Gene ontology:
Cell location: Cellular chromatophore membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the complex I subunit 6 family [H]
Homologues:
Organism=Escherichia coli, GI1788616, Length=116, Percent_Identity=37.9310344827586, Blast_Score=67, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001457 [H]
Pfam domain/function: PF00499 Oxidored_q3 [H]
EC number: =1.6.99.5 [H]
Molecular weight: Translated: 25104; Mature: 25104
Theoretical pI: Translated: 7.44; Mature: 7.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIFASDILFYVFGALAVVLSLMVVFMRNPVSSAMMMALSFGATAAVMIGLGAHFLGILQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH ILVYAGAIMVLFAFIIMLLNVKQETSPFSRPFSVAIGIIIAGLFLGQLIGIIYSLPGAKE HHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC THRCPMASAEQAWNDLKIGQEDAAPSKTGMETPACGLRNNGAPSVILPPLSPQCSAHLYP CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEECC EGTTIREEIDNGEFPDTALLGRTLFDKYNRSLVIAGLALLVASIGVVVLSRRPSGK CCCHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MNIFASDILFYVFGALAVVLSLMVVFMRNPVSSAMMMALSFGATAAVMIGLGAHFLGILQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH ILVYAGAIMVLFAFIIMLLNVKQETSPFSRPFSVAIGIIIAGLFLGQLIGIIYSLPGAKE HHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC THRCPMASAEQAWNDLKIGQEDAAPSKTGMETPACGLRNNGAPSVILPPLSPQCSAHLYP CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEECC EGTTIREEIDNGEFPDTALLGRTLFDKYNRSLVIAGLALLVASIGVVVLSRRPSGK CCCHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8566820 [H]