Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is ybdL [C]
Identifier: 187736078
GI number: 187736078
Start: 1911202
End: 1912368
Strand: Reverse
Name: ybdL [C]
Synonym: Amuc_1589
Alternate gene names: 187736078
Gene position: 1912368-1911202 (Counterclockwise)
Preceding gene: 187736079
Following gene: 187736077
Centisome position: 71.78
GC content: 57.16
Gene sequence:
>1167_bases ATGGACATGATTTCCCCCAGCATTGCGGCATTGACCCCTTCCCTGACCCTCAAGGTGACCAACCGGGCCAAGGCTATGAA AGCCTCCGGTGAAGAAGTTTACGGTTTGGCAGGCGGTGAACCTGAAATGGACACCCCGGAAAACATCAAGCAGGCAGCCA TCGCGGCCCTGAACAACGGAGCCACCAAATATACGCCTTCCGCCGGTCTTCCCGCACTCCGCCAGGCCATCGCAGAAAAG CTCAAGAGGGAAAACAACCTGGAATACGATTTCACCCAGATCACCGTGGGAGCCGGCGCCAAGCACGCCTGTTTCAACGC CATCATGGCAACCGTATCCGAGGGGGATGAAGTCATCATCCCCGCTCCGTACTGGGTCAGCTATCCGGAAATGGTCCGCA TGTGCGGAGGCATCCCCGTCATCGTGGAAACCACGGCGGAAAACGGATGGAAGCTTACCGCCGAACAATTTGAGGAAGCC ATGACCCCCCGCACCAAGATGGTCATCCTCACTACCCCGAACAATCCGACCGGGTCCGTTTATTCCGAAGAAGAACTGCG CGCCCTGGGAGAAGTGGCCCTGAGCGAAGACATCCTCATCCTGGCTGATGAAATTTACGAACACCTCGTATACGGGGACG CCAGGCACGTCAGCATCGCCTCCCTCAGTCCGGAACTGTACGACCTGACCATCACCATCAACGGCTTCTCCAAGGGCTAC GCCATGACTGGATGGCGCCTAGGCTATTCCGCAGCTCCGGCAGCCATTGCCAAGGCCATCCAGATGATTCAGGATCACAC CACTTCCAACGTCTGTACGTTCGCCCAGTATGGAGGTATTGAGGCCCTTACGGGAGACCAGAGCTTCATCAGCGACATGC GCGACGAATATGACATGCGCCGCCAGTACGTTTACTCCCGCCTCAGCGCCATCCCGAATATCAGTGTTGTGGAGCCGCAG GGCGCTTTCTACTTCTTTGTGGACACAAGCAGGCTGGGACTCACCTCCCTGAATCTGTGCGACAAGCTTCTGGAACGCTA CAAGGTCGCGGCCGTCCCCGGCATCGCCTTCGGCAATGACAAGGCCATCCGCATCAGCTACTGCACCACGCTGGACATTC TGAAAGAAGCTCTGGACCGCTTTGAAGAATTCTGCAAGGCGCATTAA
Upstream 100 bases:
>100_bases TCCTTGCCAGGGGTGCGCTCAATGAGTAAAGTTTTTCCGCCTATGCGGAGAACAGCCTGTTTTCCGCCAGGGCATCAAAA TCTACGACTGCACCACAACA
Downstream 100 bases:
>100_bases AAAACGTTGATCACCATAAAAAGGCGTTCCACGTCAAGCGGAACGCCTTTTTATTCTTCCGGATTTCCCACCTGCAGCAA ACCTGCGGCAAGGAAATGCG
Product: aminotransferase class I and II
Products: NA
Alternate protein names: AspAT; Transaminase A [H]
Number of amino acids: Translated: 388; Mature: 388
Protein sequence:
>388_residues MDMISPSIAALTPSLTLKVTNRAKAMKASGEEVYGLAGGEPEMDTPENIKQAAIAALNNGATKYTPSAGLPALRQAIAEK LKRENNLEYDFTQITVGAGAKHACFNAIMATVSEGDEVIIPAPYWVSYPEMVRMCGGIPVIVETTAENGWKLTAEQFEEA MTPRTKMVILTTPNNPTGSVYSEEELRALGEVALSEDILILADEIYEHLVYGDARHVSIASLSPELYDLTITINGFSKGY AMTGWRLGYSAAPAAIAKAIQMIQDHTTSNVCTFAQYGGIEALTGDQSFISDMRDEYDMRRQYVYSRLSAIPNISVVEPQ GAFYFFVDTSRLGLTSLNLCDKLLERYKVAAVPGIAFGNDKAIRISYCTTLDILKEALDRFEEFCKAH
Sequences:
>Translated_388_residues MDMISPSIAALTPSLTLKVTNRAKAMKASGEEVYGLAGGEPEMDTPENIKQAAIAALNNGATKYTPSAGLPALRQAIAEK LKRENNLEYDFTQITVGAGAKHACFNAIMATVSEGDEVIIPAPYWVSYPEMVRMCGGIPVIVETTAENGWKLTAEQFEEA MTPRTKMVILTTPNNPTGSVYSEEELRALGEVALSEDILILADEIYEHLVYGDARHVSIASLSPELYDLTITINGFSKGY AMTGWRLGYSAAPAAIAKAIQMIQDHTTSNVCTFAQYGGIEALTGDQSFISDMRDEYDMRRQYVYSRLSAIPNISVVEPQ GAFYFFVDTSRLGLTSLNLCDKLLERYKVAAVPGIAFGNDKAIRISYCTTLDILKEALDRFEEFCKAH >Mature_388_residues MDMISPSIAALTPSLTLKVTNRAKAMKASGEEVYGLAGGEPEMDTPENIKQAAIAALNNGATKYTPSAGLPALRQAIAEK LKRENNLEYDFTQITVGAGAKHACFNAIMATVSEGDEVIIPAPYWVSYPEMVRMCGGIPVIVETTAENGWKLTAEQFEEA MTPRTKMVILTTPNNPTGSVYSEEELRALGEVALSEDILILADEIYEHLVYGDARHVSIASLSPELYDLTITINGFSKGY AMTGWRLGYSAAPAAIAKAIQMIQDHTTSNVCTFAQYGGIEALTGDQSFISDMRDEYDMRRQYVYSRLSAIPNISVVEPQ GAFYFFVDTSRLGLTSLNLCDKLLERYKVAAVPGIAFGNDKAIRISYCTTLDILKEALDRFEEFCKAH
Specific function: Unknown
COG id: COG0436
COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI56713254, Length=390, Percent_Identity=28.2051282051282, Blast_Score=171, Evalue=1e-42, Organism=Homo sapiens, GI56713256, Length=390, Percent_Identity=28.2051282051282, Blast_Score=170, Evalue=2e-42, Organism=Homo sapiens, GI95147551, Length=323, Percent_Identity=29.4117647058824, Blast_Score=148, Evalue=7e-36, Organism=Homo sapiens, GI169881279, Length=323, Percent_Identity=29.4117647058824, Blast_Score=148, Evalue=7e-36, Organism=Homo sapiens, GI169881281, Length=247, Percent_Identity=28.3400809716599, Blast_Score=118, Evalue=8e-27, Organism=Homo sapiens, GI4507369, Length=392, Percent_Identity=24.4897959183673, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI215599424, Length=387, Percent_Identity=23.7726098191214, Blast_Score=80, Evalue=5e-15, Organism=Homo sapiens, GI19263340, Length=387, Percent_Identity=23.7726098191214, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI4885351, Length=344, Percent_Identity=24.4186046511628, Blast_Score=70, Evalue=3e-12, Organism=Escherichia coli, GI1786816, Length=378, Percent_Identity=29.6296296296296, Blast_Score=180, Evalue=1e-46, Organism=Escherichia coli, GI1788627, Length=387, Percent_Identity=31.7829457364341, Blast_Score=162, Evalue=4e-41, Organism=Escherichia coli, GI1788722, Length=403, Percent_Identity=25.8064516129032, Blast_Score=129, Evalue=4e-31, Organism=Escherichia coli, GI1787909, Length=298, Percent_Identity=20.8053691275168, Blast_Score=67, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71994476, Length=359, Percent_Identity=28.4122562674095, Blast_Score=133, Evalue=1e-31, Organism=Caenorhabditis elegans, GI71994472, Length=359, Percent_Identity=28.4122562674095, Blast_Score=133, Evalue=2e-31, Organism=Caenorhabditis elegans, GI17567663, Length=374, Percent_Identity=26.7379679144385, Blast_Score=129, Evalue=2e-30, Organism=Caenorhabditis elegans, GI17567369, Length=261, Percent_Identity=27.5862068965517, Blast_Score=124, Evalue=1e-28, Organism=Caenorhabditis elegans, GI71981209, Length=389, Percent_Identity=22.6221079691517, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322401, Length=398, Percent_Identity=27.6381909547739, Blast_Score=148, Evalue=2e-36, Organism=Saccharomyces cerevisiae, GI6323118, Length=365, Percent_Identity=24.6575342465753, Blast_Score=84, Evalue=3e-17, Organism=Saccharomyces cerevisiae, GI6320317, Length=342, Percent_Identity=23.3918128654971, Blast_Score=81, Evalue=2e-16, Organism=Drosophila melanogaster, GI28573069, Length=257, Percent_Identity=30.7392996108949, Blast_Score=143, Evalue=2e-34, Organism=Drosophila melanogaster, GI24646114, Length=257, Percent_Identity=30.7392996108949, Blast_Score=143, Evalue=2e-34, Organism=Drosophila melanogaster, GI28573067, Length=257, Percent_Identity=30.7392996108949, Blast_Score=143, Evalue=2e-34, Organism=Drosophila melanogaster, GI28573065, Length=257, Percent_Identity=30.7392996108949, Blast_Score=143, Evalue=2e-34, Organism=Drosophila melanogaster, GI18859735, Length=355, Percent_Identity=24.5070422535211, Blast_Score=108, Evalue=8e-24, Organism=Drosophila melanogaster, GI45551451, Length=392, Percent_Identity=25.765306122449, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI24641770, Length=392, Percent_Identity=25.765306122449, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI24641760, Length=392, Percent_Identity=25.765306122449, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI24641768, Length=392, Percent_Identity=25.765306122449, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI24641766, Length=392, Percent_Identity=25.765306122449, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI24641764, Length=392, Percent_Identity=25.765306122449, Blast_Score=83, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001176 - InterPro: IPR004839 - InterPro: IPR004838 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: =2.6.1.1 [H]
Molecular weight: Translated: 42442; Mature: 42442
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: PS00105 AA_TRANSFER_CLASS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDMISPSIAALTPSLTLKVTNRAKAMKASGEEVYGLAGGEPEMDTPENIKQAAIAALNNG CCCCCCCHHHCCCCEEEEECCHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCC ATKYTPSAGLPALRQAIAEKLKRENNLEYDFTQITVGAGAKHACFNAIMATVSEGDEVII CCEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEE PAPYWVSYPEMVRMCGGIPVIVETTAENGWKLTAEQFEEAMTPRTKMVILTTPNNPTGSV CCCCCCCCHHHHHHHCCCEEEEEECCCCCEEECHHHHHHHCCCCEEEEEEECCCCCCCCC YSEEELRALGEVALSEDILILADEIYEHLVYGDARHVSIASLSPELYDLTITINGFSKGY CCHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEECCCCCC AMTGWRLGYSAAPAAIAKAIQMIQDHTTSNVCTFAQYGGIEALTGDQSFISDMRDEYDMR EECCEECCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHCCEEEECCCHHHHHHHHHHHHHH RQYVYSRLSAIPNISVVEPQGAFYFFVDTSRLGLTSLNLCDKLLERYKVAAVPGIAFGND HHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEECCC KAIRISYCTTLDILKEALDRFEEFCKAH CEEEEEEHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDMISPSIAALTPSLTLKVTNRAKAMKASGEEVYGLAGGEPEMDTPENIKQAAIAALNNG CCCCCCCHHHCCCCEEEEECCHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCC ATKYTPSAGLPALRQAIAEKLKRENNLEYDFTQITVGAGAKHACFNAIMATVSEGDEVII CCEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEE PAPYWVSYPEMVRMCGGIPVIVETTAENGWKLTAEQFEEAMTPRTKMVILTTPNNPTGSV CCCCCCCCHHHHHHHCCCEEEEEECCCCCEEECHHHHHHHCCCCEEEEEEECCCCCCCCC YSEEELRALGEVALSEDILILADEIYEHLVYGDARHVSIASLSPELYDLTITINGFSKGY CCHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEECCCCCC AMTGWRLGYSAAPAAIAKAIQMIQDHTTSNVCTFAQYGGIEALTGDQSFISDMRDEYDMR EECCEECCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHCCEEEECCCHHHHHHHHHHHHHH RQYVYSRLSAIPNISVVEPQGAFYFFVDTSRLGLTSLNLCDKLLERYKVAAVPGIAFGND HHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEECCC KAIRISYCTTLDILKEALDRFEEFCKAH CEEEEEEHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1990006; 2155199 [H]