Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736060
Identifier: 187736060
GI number: 187736060
Start: 1894141
End: 1895049
Strand: Reverse
Name: 187736060
Synonym: Amuc_1570
Alternate gene names: NA
Gene position: 1895049-1894141 (Counterclockwise)
Preceding gene: 187736063
Following gene: 187736059
Centisome position: 71.13
GC content: 58.42
Gene sequence:
>909_bases ATGCCCAAGGCCCCCAGACACACACCGCCGCACCAGGACTGGCGCCGGTATGCAGAAACCGCCCGGAAACCAAGATCCGC GGCAAGCCTCGGCGACATGATGCGGCAATGCAACCGGGACGCCTGGGACAAAACTTACCGCGCCCAGGTATCCTCCGAAT ACTGGGAGGACGAATGCCAGGAATTTTCCTTCATGGATCTCCCGCGCAGAACCCGGTTCATCAGGCATGCCGTAGCCACC CTTATCCTGCTTCCGCTGGCCCTGATCACGGCCATGTCCCTGTGCGACCAGCTGACCCATGCCTCCGGCAGCCTCAATAT CCTCTTCTCCATTCCCGTATGGTACGCCCTGATGGGCGCTGCCGTGTGGGTGGTGCTGGGCAGCAGCAGGCTGTTCACAT CCTCCCTGCTGTACCTGTACGTATTGGGGCATGAACTGACGCACGCTCTGGCGGTCATTTGCAGCCGCGGTTCCATCCAT GCTTTCAAAGCGGATCTGGACGGAGGTTACATCCAGACGGATAAAAACAACATCTTTATCTCCCTTTCCCCCTACTTCCT TCCTCTCTGGGCCATGCTGTGGGGATTGGTATGGGGCGTAACGTACCTCTTCTGGCCTACAGTCACCTGCCAGGCCCTTC TTTACTCCGGCCTGGGCTTCTGGTGGTGCTTCCACCTGTTCTGGACGGCATGGATCATTCCCAAGGACCAGCCGGACCTG GCGGACAACGGCACCTTCTTCTCCCTGATTCTCGTATATTTTGCCAATCTTCTTCTCTTCCTGGCGCTCCTGCGCCTGTT CAACGCCGTAAGCCTTCACCGCTTTCTGGCGGATTGCATCCACAATGCGGAAAAATTGTGGGACGTTCTCAGGGACCTCG CCATGCTGGCTGCCGGGCTGTTCCTGTAA
Upstream 100 bases:
>100_bases GGCGTGGATAAAACATTTTTTCCTCCGGTTTCCGGAAGAGGCAAATTTGGTTCGCATTTCTCCTCAAGTCCCTTTATGCT GGTTCCAGACCTCACACCGC
Downstream 100 bases:
>100_bases AAAATATTCTTTTCCTTACACGGAATGATGAACGGCAGAAGGGGAAAAGGAATCCAACCTTTCAACAGAAAGGAGTTTCC ATGCGCACCACACACTTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 302; Mature: 301
Protein sequence:
>302_residues MPKAPRHTPPHQDWRRYAETARKPRSAASLGDMMRQCNRDAWDKTYRAQVSSEYWEDECQEFSFMDLPRRTRFIRHAVAT LILLPLALITAMSLCDQLTHASGSLNILFSIPVWYALMGAAVWVVLGSSRLFTSSLLYLYVLGHELTHALAVICSRGSIH AFKADLDGGYIQTDKNNIFISLSPYFLPLWAMLWGLVWGVTYLFWPTVTCQALLYSGLGFWWCFHLFWTAWIIPKDQPDL ADNGTFFSLILVYFANLLLFLALLRLFNAVSLHRFLADCIHNAEKLWDVLRDLAMLAAGLFL
Sequences:
>Translated_302_residues MPKAPRHTPPHQDWRRYAETARKPRSAASLGDMMRQCNRDAWDKTYRAQVSSEYWEDECQEFSFMDLPRRTRFIRHAVAT LILLPLALITAMSLCDQLTHASGSLNILFSIPVWYALMGAAVWVVLGSSRLFTSSLLYLYVLGHELTHALAVICSRGSIH AFKADLDGGYIQTDKNNIFISLSPYFLPLWAMLWGLVWGVTYLFWPTVTCQALLYSGLGFWWCFHLFWTAWIIPKDQPDL ADNGTFFSLILVYFANLLLFLALLRLFNAVSLHRFLADCIHNAEKLWDVLRDLAMLAAGLFL >Mature_301_residues PKAPRHTPPHQDWRRYAETARKPRSAASLGDMMRQCNRDAWDKTYRAQVSSEYWEDECQEFSFMDLPRRTRFIRHAVATL ILLPLALITAMSLCDQLTHASGSLNILFSIPVWYALMGAAVWVVLGSSRLFTSSLLYLYVLGHELTHALAVICSRGSIHA FKADLDGGYIQTDKNNIFISLSPYFLPLWAMLWGLVWGVTYLFWPTVTCQALLYSGLGFWWCFHLFWTAWIIPKDQPDLA DNGTFFSLILVYFANLLLFLALLRLFNAVSLHRFLADCIHNAEKLWDVLRDLAMLAAGLFL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34635; Mature: 34504
Theoretical pI: Translated: 7.83; Mature: 7.83
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKAPRHTPPHQDWRRYAETARKPRSAASLGDMMRQCNRDAWDKTYRAQVSSEYWEDECQ CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH EFSFMDLPRRTRFIRHAVATLILLPLALITAMSLCDQLTHASGSLNILFSIPVWYALMGA CCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHH AVWVVLGSSRLFTSSLLYLYVLGHELTHALAVICSRGSIHAFKADLDGGYIQTDKNNIFI HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEECCCCEEE SLSPYFLPLWAMLWGLVWGVTYLFWPTVTCQALLYSGLGFWWCFHLFWTAWIIPKDQPDL EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC ADNGTFFSLILVYFANLLLFLALLRLFNAVSLHRFLADCIHNAEKLWDVLRDLAMLAAGL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FL CC >Mature Secondary Structure PKAPRHTPPHQDWRRYAETARKPRSAASLGDMMRQCNRDAWDKTYRAQVSSEYWEDECQ CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH EFSFMDLPRRTRFIRHAVATLILLPLALITAMSLCDQLTHASGSLNILFSIPVWYALMGA CCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHH AVWVVLGSSRLFTSSLLYLYVLGHELTHALAVICSRGSIHAFKADLDGGYIQTDKNNIFI HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEECCCCEEE SLSPYFLPLWAMLWGLVWGVTYLFWPTVTCQALLYSGLGFWWCFHLFWTAWIIPKDQPDL EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC ADNGTFFSLILVYFANLLLFLALLRLFNAVSLHRFLADCIHNAEKLWDVLRDLAMLAAGL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FL CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA