Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is trpC [H]
Identifier: 187736023
GI number: 187736023
Start: 1835875
End: 1836660
Strand: Direct
Name: trpC [H]
Synonym: Amuc_1533
Alternate gene names: 187736023
Gene position: 1835875-1836660 (Clockwise)
Preceding gene: 187736022
Following gene: 187736024
Centisome position: 68.91
GC content: 61.83
Gene sequence:
>786_bases ATGCTGCTTGACCGGTTCCGGGAAGCAAAGGCGGAGGAAATAGCCCTGCTCACGGACATGGCCTCCCGCCGGGAACTGCC GCGCCCGTGGAAGGGGCGCCGGCCGGATTTCCTGAAAGCCATTGCGGAACCGCCGGACGGGCAGCCCGTGGCGGTCATTG CGGAGTTCAAGCAGTCCTCTCCGTCGCGCGGTGTCATCGCCACCGGGCTGAAACCGGAGGAAGTGGCTGAACAATACGCT GCGGCAGGCGCCTCCTGCATCTCCGTGTTGACGGAAGAACAGTTTTTCGGCGGCCGCATCGGATATTTGGAACGCATGAG CCGCGCCGGGCTTCCGCTTCTCCGCAAGGATTTCATTTTTCATCAGCTTCAGGTGATGGAGACGGCTTCTACGCCGGCTT CCGCTTTGCTGCTCATTGTCCGTCTGACGCCGGATGCACGGACGCTCCGTGTTCTCAGGGAGCAGGCGGAGGCTTACGGC ATGCACGCCGTTGTGGAAGTGTTCGACGCTGCGGATCTGGAAATTGCCAGGGACTCCGGCGCGCGCATCATCCAGGTAAA CGCCCGTGACCTGGACACATTGAAAACGGACAGGCAGGCCTGCCTGGACATGGCGAAATTCCGCCGTGAGGGGGAGGTGT GGATCGCCGCCAGCGCCATGAGCGCAGGGGCTCATCTCAGGGAAGCCGCGGAAGCGGGGTTTCAGGCCGTACTGATGGGA ACAGCCCTGATGGACGGAGGAAGGCCGGGTGAAAAACTGGCGGCAATTTTAGAAGAAACGATATGA
Upstream 100 bases:
>100_bases GGGGTAGCCATGTTCCTGCTGGAGGAGCACATGGACCTGTCCGTCTGCATGGCGAAAGCACGGGAAGCCGTCTGCGCCGG CATAGGAAGGAGAACGCTTC
Downstream 100 bases:
>100_bases AGAAGCATTCATTTGCAATCAAGGTGTGCGGAATTACCCGCCAGAGCGATTTATCAACCGCCATGGGGATGGGGGCCCAT TTCTGCGGCTTCATCTTTCA
Product: Indole-3-glycerol-phosphate synthase
Products: NA
Alternate protein names: IGPS [H]
Number of amino acids: Translated: 261; Mature: 261
Protein sequence:
>261_residues MLLDRFREAKAEEIALLTDMASRRELPRPWKGRRPDFLKAIAEPPDGQPVAVIAEFKQSSPSRGVIATGLKPEEVAEQYA AAGASCISVLTEEQFFGGRIGYLERMSRAGLPLLRKDFIFHQLQVMETASTPASALLLIVRLTPDARTLRVLREQAEAYG MHAVVEVFDAADLEIARDSGARIIQVNARDLDTLKTDRQACLDMAKFRREGEVWIAASAMSAGAHLREAAEAGFQAVLMG TALMDGGRPGEKLAAILEETI
Sequences:
>Translated_261_residues MLLDRFREAKAEEIALLTDMASRRELPRPWKGRRPDFLKAIAEPPDGQPVAVIAEFKQSSPSRGVIATGLKPEEVAEQYA AAGASCISVLTEEQFFGGRIGYLERMSRAGLPLLRKDFIFHQLQVMETASTPASALLLIVRLTPDARTLRVLREQAEAYG MHAVVEVFDAADLEIARDSGARIIQVNARDLDTLKTDRQACLDMAKFRREGEVWIAASAMSAGAHLREAAEAGFQAVLMG TALMDGGRPGEKLAAILEETI >Mature_261_residues MLLDRFREAKAEEIALLTDMASRRELPRPWKGRRPDFLKAIAEPPDGQPVAVIAEFKQSSPSRGVIATGLKPEEVAEQYA AAGASCISVLTEEQFFGGRIGYLERMSRAGLPLLRKDFIFHQLQVMETASTPASALLLIVRLTPDARTLRVLREQAEAYG MHAVVEVFDAADLEIARDSGARIIQVNARDLDTLKTDRQACLDMAKFRREGEVWIAASAMSAGAHLREAAEAGFQAVLMG TALMDGGRPGEKLAAILEETI
Specific function: Bifunctional Enzyme That Catalyzes Two Sequential Steps Of Tryptophan Biosynthetic Pathway. The First Reaction Is Catalyzed By The Isomerase, Coded By The Trpf Domain; The Second Reaction Is Catalyzed By The Synthase, Coded By The Trpc Domain. [C]
COG id: COG0134
COG function: function code E; Indole-3-glycerol phosphate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trpC family [H]
Homologues:
Organism=Escherichia coli, GI87081863, Length=201, Percent_Identity=33.8308457711443, Blast_Score=83, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6322638, Length=203, Percent_Identity=32.0197044334975, Blast_Score=91, Evalue=3e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR013798 - InterPro: IPR001468 - InterPro: IPR011060 [H]
Pfam domain/function: PF00218 IGPS [H]
EC number: =4.1.1.48 [H]
Molecular weight: Translated: 28562; Mature: 28562
Theoretical pI: Translated: 5.26; Mature: 5.26
Prosite motif: PS00614 IGPS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLDRFREAKAEEIALLTDMASRRELPRPWKGRRPDFLKAIAEPPDGQPVAVIAEFKQSS CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEEEHHCCC PSRGVIATGLKPEEVAEQYAAAGASCISVLTEEQFFGGRIGYLERMSRAGLPLLRKDFIF CCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH HQLQVMETASTPASALLLIVRLTPDARTLRVLREQAEAYGMHAVVEVFDAADLEIARDSG HHHHHHHHCCCCHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC ARIIQVNARDLDTLKTDRQACLDMAKFRREGEVWIAASAMSAGAHLREAAEAGFQAVLMG CEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHH TALMDGGRPGEKLAAILEETI HHHHCCCCCHHHHHHHHHHCC >Mature Secondary Structure MLLDRFREAKAEEIALLTDMASRRELPRPWKGRRPDFLKAIAEPPDGQPVAVIAEFKQSS CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEEEHHCCC PSRGVIATGLKPEEVAEQYAAAGASCISVLTEEQFFGGRIGYLERMSRAGLPLLRKDFIF CCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH HQLQVMETASTPASALLLIVRLTPDARTLRVLREQAEAYGMHAVVEVFDAADLEIARDSG HHHHHHHHCCCCHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC ARIIQVNARDLDTLKTDRQACLDMAKFRREGEVWIAASAMSAGAHLREAAEAGFQAVLMG CEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHH TALMDGGRPGEKLAAILEETI HHHHCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA