Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is trpD [H]

Identifier: 187736022

GI number: 187736022

Start: 1834293

End: 1835885

Strand: Direct

Name: trpD [H]

Synonym: Amuc_1532

Alternate gene names: 187736022

Gene position: 1834293-1835885 (Clockwise)

Preceding gene: 187736021

Following gene: 187736023

Centisome position: 68.85

GC content: 62.46

Gene sequence:

>1593_bases
ATGTTTCTGTTCATTGATAATTACGATTCGTTTTCGTGGAATCTGGTGCAGGCGTTTTATGCCCTGGGACGCAAGCCCGT
GGTGCATGCGAATGACGATTCTCGTATTCTGGAACTGGCGACCAGCCCGGAGCTGGAAGCCGTGTGCATTTCCCCCGGCC
CCAGCCATCCGCGCAACGCCGGGCTGTGCCTGGAGTTCCTGAAACGCCTCCCCGCTTCCGTTCCCGTGCTGGGCGTGTGC
CTGGGGCACCAGCTTCTGGGCTACTTCGCCGGGGCGGAGGTTTCCCGCGCTCCGTATGTCATGCACGGCAAGAGTTCCGA
CATCATCCATGACGGCGCTGGGCTGTTTTCCGGGCTTCCCAATCCCATGACCGTGGGCCGCTACCATTCCCTGGTGGTCC
AGTCCAAGGAGGACGAGCCGAATCCCCGCTTTACCGTTACTTCCCGCGGGCCGGAAGGGGAAGTCATGGCCCTGCGCTAC
AATGACCGTCCGTGGGTGGGCATCCAGTTTCATCCGGAATCCATCCTGACGCCGAACGGGCTTCAGCTTCTGGGCAATTT
CCCGGATAACGTCGTGCCTTCGGGGCAGAAGGAAAAGCGCATCAGCCGCATTCTGGACGCCCTGGCCGCCGGACAGGACC
TGACGGCGGATATGGCTGCCGCAGGCTTTGCGGACATCATGGATGGCCGCATGACTCCGGCCCAGGCGGGCTGCTTTTTG
ATGGGGCTCCGCATGAAAGGGGAAACCCCGCTGGAAATGGCCCACGCCGTGGGCATTGCCCTGGGCCGCGCCAACCGGGT
GGAAGGTTTGGAAGGCGACTGCATTGACGTGGTAGGCACGGGGGGGGACGGCCGCAACTCTTTCAATTGCTCCACAGCCA
CGGCTCTGACGCTGGCCGGAATGGGATACAGGGTGGTGAAGCACGGCAACCGCGCCGTGTCCTCCTCCTGCGGTTCTGCG
GACGCTCTGGAAGGCCTGGGATTCCCGCTGGACGTAGCTCCGGAAGATGTCCGGCGCCTGTTGGACGAGCGGAACTTCGC
TTTCCTGTTCGCGCCTAATTTTCATCCTTCCTTCCGCAATGTAGGCCCCATCCGCCGGGAGCTGGGCATCCGCACCCTGT
TCAATCTGCTGGGCCCCCTCATCAACCCGGCGCGTCCCACGCACATCCTGCTGGGCGTGGCCCGTCCGGAACTCGTCGAG
CTGCTGGCGGAGACGCTCCGCCAGTCCCACATCCGCAAGGCTGCCGTAGTATATGGCGCCGGGGGCTATGACGAGGTGAC
GCCGCTGGGGCCCACCAAGATGATGATCATCCACAACGGCAGGCTGACGCCCATGTCCCTGGATCCCCTGGATTACGGCA
TCCAGCCCTGCAATCCGGAGGAACTGGCCGTTCATTCCAAGTCGGAAGCCGTGGACGTGCTGAAAAACATCCTGGCGGGG
AAAGGCCCGCGTGCCATGATGGACATGGTGATTCTGAATGTGGGGGTAGCCATGTTCCTGCTGGAGGAGCACATGGACCT
GTCCGTCTGCATGGCGAAAGCACGGGAAGCCGTCTGCGCCGGCATAGGAAGGAGAACGCTTCATGCTGCTTGA

Upstream 100 bases:

>100_bases
ACGGGAGCCGGCATCGTATATGATTCCGATCCGGCCGCGGAATGGCAGGAATGCATGAACAAGGGTAAGATTATTGACGT
TATTTTGAAAGGAGAAGACC

Downstream 100 bases:

>100_bases
CCGGTTCCGGGAAGCAAAGGCGGAGGAAATAGCCCTGCTCACGGACATGGCCTCCCGCCGGGAACTGCCGCGCCCGTGGA
AGGGGCGCCGGCCGGATTTC

Product: anthranilate phosphoribosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 530; Mature: 530

Protein sequence:

>530_residues
MFLFIDNYDSFSWNLVQAFYALGRKPVVHANDDSRILELATSPELEAVCISPGPSHPRNAGLCLEFLKRLPASVPVLGVC
LGHQLLGYFAGAEVSRAPYVMHGKSSDIIHDGAGLFSGLPNPMTVGRYHSLVVQSKEDEPNPRFTVTSRGPEGEVMALRY
NDRPWVGIQFHPESILTPNGLQLLGNFPDNVVPSGQKEKRISRILDALAAGQDLTADMAAAGFADIMDGRMTPAQAGCFL
MGLRMKGETPLEMAHAVGIALGRANRVEGLEGDCIDVVGTGGDGRNSFNCSTATALTLAGMGYRVVKHGNRAVSSSCGSA
DALEGLGFPLDVAPEDVRRLLDERNFAFLFAPNFHPSFRNVGPIRRELGIRTLFNLLGPLINPARPTHILLGVARPELVE
LLAETLRQSHIRKAAVVYGAGGYDEVTPLGPTKMMIIHNGRLTPMSLDPLDYGIQPCNPEELAVHSKSEAVDVLKNILAG
KGPRAMMDMVILNVGVAMFLLEEHMDLSVCMAKAREAVCAGIGRRTLHAA

Sequences:

>Translated_530_residues
MFLFIDNYDSFSWNLVQAFYALGRKPVVHANDDSRILELATSPELEAVCISPGPSHPRNAGLCLEFLKRLPASVPVLGVC
LGHQLLGYFAGAEVSRAPYVMHGKSSDIIHDGAGLFSGLPNPMTVGRYHSLVVQSKEDEPNPRFTVTSRGPEGEVMALRY
NDRPWVGIQFHPESILTPNGLQLLGNFPDNVVPSGQKEKRISRILDALAAGQDLTADMAAAGFADIMDGRMTPAQAGCFL
MGLRMKGETPLEMAHAVGIALGRANRVEGLEGDCIDVVGTGGDGRNSFNCSTATALTLAGMGYRVVKHGNRAVSSSCGSA
DALEGLGFPLDVAPEDVRRLLDERNFAFLFAPNFHPSFRNVGPIRRELGIRTLFNLLGPLINPARPTHILLGVARPELVE
LLAETLRQSHIRKAAVVYGAGGYDEVTPLGPTKMMIIHNGRLTPMSLDPLDYGIQPCNPEELAVHSKSEAVDVLKNILAG
KGPRAMMDMVILNVGVAMFLLEEHMDLSVCMAKAREAVCAGIGRRTLHAA
>Mature_530_residues
MFLFIDNYDSFSWNLVQAFYALGRKPVVHANDDSRILELATSPELEAVCISPGPSHPRNAGLCLEFLKRLPASVPVLGVC
LGHQLLGYFAGAEVSRAPYVMHGKSSDIIHDGAGLFSGLPNPMTVGRYHSLVVQSKEDEPNPRFTVTSRGPEGEVMALRY
NDRPWVGIQFHPESILTPNGLQLLGNFPDNVVPSGQKEKRISRILDALAAGQDLTADMAAAGFADIMDGRMTPAQAGCFL
MGLRMKGETPLEMAHAVGIALGRANRVEGLEGDCIDVVGTGGDGRNSFNCSTATALTLAGMGYRVVKHGNRAVSSSCGSA
DALEGLGFPLDVAPEDVRRLLDERNFAFLFAPNFHPSFRNVGPIRRELGIRTLFNLLGPLINPARPTHILLGVARPELVE
LLAETLRQSHIRKAAVVYGAGGYDEVTPLGPTKMMIIHNGRLTPMSLDPLDYGIQPCNPEELAVHSKSEAVDVLKNILAG
KGPRAMMDMVILNVGVAMFLLEEHMDLSVCMAKAREAVCAGIGRRTLHAA

Specific function: Tryptophan biosynthesis; first step. Tryptophan biosynthesis; second step. [C]

COG id: COG0547

COG function: function code E; Anthranilate phosphoribosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anthranilate phosphoribosyltransferase family [H]

Homologues:

Organism=Escherichia coli, GI1787517, Length=484, Percent_Identity=40.0826446280992, Blast_Score=314, Evalue=8e-87,
Organism=Escherichia coli, GI1789760, Length=188, Percent_Identity=47.3404255319149, Blast_Score=167, Evalue=1e-42,
Organism=Saccharomyces cerevisiae, GI6320561, Length=322, Percent_Identity=31.3664596273292, Blast_Score=132, Evalue=2e-31,
Organism=Saccharomyces cerevisiae, GI6322638, Length=220, Percent_Identity=35, Blast_Score=128, Evalue=3e-30,
Organism=Saccharomyces cerevisiae, GI6324361, Length=223, Percent_Identity=31.390134529148, Blast_Score=83, Evalue=1e-16,

Paralogues:

None

Copy number: 945 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005940
- InterPro:   IPR000312
- InterPro:   IPR017459
- InterPro:   IPR020072 [H]

Pfam domain/function: PF02885 Glycos_trans_3N; PF00591 Glycos_transf_3 [H]

EC number: =2.4.2.18 [H]

Molecular weight: Translated: 57115; Mature: 57115

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS00442 GATASE_TYPE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLFIDNYDSFSWNLVQAFYALGRKPVVHANDDSRILELATSPELEAVCISPGPSHPRNA
CEEEEECCCCCCHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCCCCCC
GLCLEFLKRLPASVPVLGVCLGHQLLGYFAGAEVSRAPYVMHGKSSDIIHDGAGLFSGLP
CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEECCCHHHCCCC
NPMTVGRYHSLVVQSKEDEPNPRFTVTSRGPEGEVMALRYNDRPWVGIQFHPESILTPNG
CCCCCCCHHEEEEECCCCCCCCCEEEECCCCCCCEEEEEECCCCEEEEEECCCCCCCCCC
LQLLGNFPDNVVPSGQKEKRISRILDALAAGQDLTADMAAAGFADIMDGRMTPAQAGCFL
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHCCEEE
MGLRMKGETPLEMAHAVGIALGRANRVEGLEGDCIDVVGTGGDGRNSFNCSTATALTLAG
EEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHC
MGYRVVKHGNRAVSSSCGSADALEGLGFPLDVAPEDVRRLLDERNFAFLFAPNFHPSFRN
CCEEEHHCCCHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCC
VGPIRRELGIRTLFNLLGPLINPARPTHILLGVARPELVELLAETLRQSHIRKAAVVYGA
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCEEEEEEEC
GGYDEVTPLGPTKMMIIHNGRLTPMSLDPLDYGIQPCNPEELAVHSKSEAVDVLKNILAG
CCCCCCCCCCCEEEEEEECCEECCEECCHHHCCCCCCCHHHHEECCHHHHHHHHHHHHCC
KGPRAMMDMVILNVGVAMFLLEEHMDLSVCMAKAREAVCAGIGRRTLHAA
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHCCC
>Mature Secondary Structure
MFLFIDNYDSFSWNLVQAFYALGRKPVVHANDDSRILELATSPELEAVCISPGPSHPRNA
CEEEEECCCCCCHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCCCCCC
GLCLEFLKRLPASVPVLGVCLGHQLLGYFAGAEVSRAPYVMHGKSSDIIHDGAGLFSGLP
CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEECCCHHHCCCC
NPMTVGRYHSLVVQSKEDEPNPRFTVTSRGPEGEVMALRYNDRPWVGIQFHPESILTPNG
CCCCCCCHHEEEEECCCCCCCCCEEEECCCCCCCEEEEEECCCCEEEEEECCCCCCCCCC
LQLLGNFPDNVVPSGQKEKRISRILDALAAGQDLTADMAAAGFADIMDGRMTPAQAGCFL
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHCCEEE
MGLRMKGETPLEMAHAVGIALGRANRVEGLEGDCIDVVGTGGDGRNSFNCSTATALTLAG
EEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHC
MGYRVVKHGNRAVSSSCGSADALEGLGFPLDVAPEDVRRLLDERNFAFLFAPNFHPSFRN
CCEEEHHCCCHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCC
VGPIRRELGIRTLFNLLGPLINPARPTHILLGVARPELVELLAETLRQSHIRKAAVVYGA
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCEEEEEEEC
GGYDEVTPLGPTKMMIIHNGRLTPMSLDPLDYGIQPCNPEELAVHSKSEAVDVLKNILAG
CCCCCCCCCCCEEEEEEECCEECCEECCHHHCCCCCCCHHHHEECCHHHHHHHHHHHHCC
KGPRAMMDMVILNVGVAMFLLEEHMDLSVCMAKAREAVCAGIGRRTLHAA
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA