Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is trpD [H]
Identifier: 187736022
GI number: 187736022
Start: 1834293
End: 1835885
Strand: Direct
Name: trpD [H]
Synonym: Amuc_1532
Alternate gene names: 187736022
Gene position: 1834293-1835885 (Clockwise)
Preceding gene: 187736021
Following gene: 187736023
Centisome position: 68.85
GC content: 62.46
Gene sequence:
>1593_bases ATGTTTCTGTTCATTGATAATTACGATTCGTTTTCGTGGAATCTGGTGCAGGCGTTTTATGCCCTGGGACGCAAGCCCGT GGTGCATGCGAATGACGATTCTCGTATTCTGGAACTGGCGACCAGCCCGGAGCTGGAAGCCGTGTGCATTTCCCCCGGCC CCAGCCATCCGCGCAACGCCGGGCTGTGCCTGGAGTTCCTGAAACGCCTCCCCGCTTCCGTTCCCGTGCTGGGCGTGTGC CTGGGGCACCAGCTTCTGGGCTACTTCGCCGGGGCGGAGGTTTCCCGCGCTCCGTATGTCATGCACGGCAAGAGTTCCGA CATCATCCATGACGGCGCTGGGCTGTTTTCCGGGCTTCCCAATCCCATGACCGTGGGCCGCTACCATTCCCTGGTGGTCC AGTCCAAGGAGGACGAGCCGAATCCCCGCTTTACCGTTACTTCCCGCGGGCCGGAAGGGGAAGTCATGGCCCTGCGCTAC AATGACCGTCCGTGGGTGGGCATCCAGTTTCATCCGGAATCCATCCTGACGCCGAACGGGCTTCAGCTTCTGGGCAATTT CCCGGATAACGTCGTGCCTTCGGGGCAGAAGGAAAAGCGCATCAGCCGCATTCTGGACGCCCTGGCCGCCGGACAGGACC TGACGGCGGATATGGCTGCCGCAGGCTTTGCGGACATCATGGATGGCCGCATGACTCCGGCCCAGGCGGGCTGCTTTTTG ATGGGGCTCCGCATGAAAGGGGAAACCCCGCTGGAAATGGCCCACGCCGTGGGCATTGCCCTGGGCCGCGCCAACCGGGT GGAAGGTTTGGAAGGCGACTGCATTGACGTGGTAGGCACGGGGGGGGACGGCCGCAACTCTTTCAATTGCTCCACAGCCA CGGCTCTGACGCTGGCCGGAATGGGATACAGGGTGGTGAAGCACGGCAACCGCGCCGTGTCCTCCTCCTGCGGTTCTGCG GACGCTCTGGAAGGCCTGGGATTCCCGCTGGACGTAGCTCCGGAAGATGTCCGGCGCCTGTTGGACGAGCGGAACTTCGC TTTCCTGTTCGCGCCTAATTTTCATCCTTCCTTCCGCAATGTAGGCCCCATCCGCCGGGAGCTGGGCATCCGCACCCTGT TCAATCTGCTGGGCCCCCTCATCAACCCGGCGCGTCCCACGCACATCCTGCTGGGCGTGGCCCGTCCGGAACTCGTCGAG CTGCTGGCGGAGACGCTCCGCCAGTCCCACATCCGCAAGGCTGCCGTAGTATATGGCGCCGGGGGCTATGACGAGGTGAC GCCGCTGGGGCCCACCAAGATGATGATCATCCACAACGGCAGGCTGACGCCCATGTCCCTGGATCCCCTGGATTACGGCA TCCAGCCCTGCAATCCGGAGGAACTGGCCGTTCATTCCAAGTCGGAAGCCGTGGACGTGCTGAAAAACATCCTGGCGGGG AAAGGCCCGCGTGCCATGATGGACATGGTGATTCTGAATGTGGGGGTAGCCATGTTCCTGCTGGAGGAGCACATGGACCT GTCCGTCTGCATGGCGAAAGCACGGGAAGCCGTCTGCGCCGGCATAGGAAGGAGAACGCTTCATGCTGCTTGA
Upstream 100 bases:
>100_bases ACGGGAGCCGGCATCGTATATGATTCCGATCCGGCCGCGGAATGGCAGGAATGCATGAACAAGGGTAAGATTATTGACGT TATTTTGAAAGGAGAAGACC
Downstream 100 bases:
>100_bases CCGGTTCCGGGAAGCAAAGGCGGAGGAAATAGCCCTGCTCACGGACATGGCCTCCCGCCGGGAACTGCCGCGCCCGTGGA AGGGGCGCCGGCCGGATTTC
Product: anthranilate phosphoribosyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 530; Mature: 530
Protein sequence:
>530_residues MFLFIDNYDSFSWNLVQAFYALGRKPVVHANDDSRILELATSPELEAVCISPGPSHPRNAGLCLEFLKRLPASVPVLGVC LGHQLLGYFAGAEVSRAPYVMHGKSSDIIHDGAGLFSGLPNPMTVGRYHSLVVQSKEDEPNPRFTVTSRGPEGEVMALRY NDRPWVGIQFHPESILTPNGLQLLGNFPDNVVPSGQKEKRISRILDALAAGQDLTADMAAAGFADIMDGRMTPAQAGCFL MGLRMKGETPLEMAHAVGIALGRANRVEGLEGDCIDVVGTGGDGRNSFNCSTATALTLAGMGYRVVKHGNRAVSSSCGSA DALEGLGFPLDVAPEDVRRLLDERNFAFLFAPNFHPSFRNVGPIRRELGIRTLFNLLGPLINPARPTHILLGVARPELVE LLAETLRQSHIRKAAVVYGAGGYDEVTPLGPTKMMIIHNGRLTPMSLDPLDYGIQPCNPEELAVHSKSEAVDVLKNILAG KGPRAMMDMVILNVGVAMFLLEEHMDLSVCMAKAREAVCAGIGRRTLHAA
Sequences:
>Translated_530_residues MFLFIDNYDSFSWNLVQAFYALGRKPVVHANDDSRILELATSPELEAVCISPGPSHPRNAGLCLEFLKRLPASVPVLGVC LGHQLLGYFAGAEVSRAPYVMHGKSSDIIHDGAGLFSGLPNPMTVGRYHSLVVQSKEDEPNPRFTVTSRGPEGEVMALRY NDRPWVGIQFHPESILTPNGLQLLGNFPDNVVPSGQKEKRISRILDALAAGQDLTADMAAAGFADIMDGRMTPAQAGCFL MGLRMKGETPLEMAHAVGIALGRANRVEGLEGDCIDVVGTGGDGRNSFNCSTATALTLAGMGYRVVKHGNRAVSSSCGSA DALEGLGFPLDVAPEDVRRLLDERNFAFLFAPNFHPSFRNVGPIRRELGIRTLFNLLGPLINPARPTHILLGVARPELVE LLAETLRQSHIRKAAVVYGAGGYDEVTPLGPTKMMIIHNGRLTPMSLDPLDYGIQPCNPEELAVHSKSEAVDVLKNILAG KGPRAMMDMVILNVGVAMFLLEEHMDLSVCMAKAREAVCAGIGRRTLHAA >Mature_530_residues MFLFIDNYDSFSWNLVQAFYALGRKPVVHANDDSRILELATSPELEAVCISPGPSHPRNAGLCLEFLKRLPASVPVLGVC LGHQLLGYFAGAEVSRAPYVMHGKSSDIIHDGAGLFSGLPNPMTVGRYHSLVVQSKEDEPNPRFTVTSRGPEGEVMALRY NDRPWVGIQFHPESILTPNGLQLLGNFPDNVVPSGQKEKRISRILDALAAGQDLTADMAAAGFADIMDGRMTPAQAGCFL MGLRMKGETPLEMAHAVGIALGRANRVEGLEGDCIDVVGTGGDGRNSFNCSTATALTLAGMGYRVVKHGNRAVSSSCGSA DALEGLGFPLDVAPEDVRRLLDERNFAFLFAPNFHPSFRNVGPIRRELGIRTLFNLLGPLINPARPTHILLGVARPELVE LLAETLRQSHIRKAAVVYGAGGYDEVTPLGPTKMMIIHNGRLTPMSLDPLDYGIQPCNPEELAVHSKSEAVDVLKNILAG KGPRAMMDMVILNVGVAMFLLEEHMDLSVCMAKAREAVCAGIGRRTLHAA
Specific function: Tryptophan biosynthesis; first step. Tryptophan biosynthesis; second step. [C]
COG id: COG0547
COG function: function code E; Anthranilate phosphoribosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the anthranilate phosphoribosyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1787517, Length=484, Percent_Identity=40.0826446280992, Blast_Score=314, Evalue=8e-87, Organism=Escherichia coli, GI1789760, Length=188, Percent_Identity=47.3404255319149, Blast_Score=167, Evalue=1e-42, Organism=Saccharomyces cerevisiae, GI6320561, Length=322, Percent_Identity=31.3664596273292, Blast_Score=132, Evalue=2e-31, Organism=Saccharomyces cerevisiae, GI6322638, Length=220, Percent_Identity=35, Blast_Score=128, Evalue=3e-30, Organism=Saccharomyces cerevisiae, GI6324361, Length=223, Percent_Identity=31.390134529148, Blast_Score=83, Evalue=1e-16,
Paralogues:
None
Copy number: 945 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 900 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005940 - InterPro: IPR000312 - InterPro: IPR017459 - InterPro: IPR020072 [H]
Pfam domain/function: PF02885 Glycos_trans_3N; PF00591 Glycos_transf_3 [H]
EC number: =2.4.2.18 [H]
Molecular weight: Translated: 57115; Mature: 57115
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: PS00442 GATASE_TYPE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFLFIDNYDSFSWNLVQAFYALGRKPVVHANDDSRILELATSPELEAVCISPGPSHPRNA CEEEEECCCCCCHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCCCCCC GLCLEFLKRLPASVPVLGVCLGHQLLGYFAGAEVSRAPYVMHGKSSDIIHDGAGLFSGLP CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEECCCHHHCCCC NPMTVGRYHSLVVQSKEDEPNPRFTVTSRGPEGEVMALRYNDRPWVGIQFHPESILTPNG CCCCCCCHHEEEEECCCCCCCCCEEEECCCCCCCEEEEEECCCCEEEEEECCCCCCCCCC LQLLGNFPDNVVPSGQKEKRISRILDALAAGQDLTADMAAAGFADIMDGRMTPAQAGCFL HHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHCCEEE MGLRMKGETPLEMAHAVGIALGRANRVEGLEGDCIDVVGTGGDGRNSFNCSTATALTLAG EEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHC MGYRVVKHGNRAVSSSCGSADALEGLGFPLDVAPEDVRRLLDERNFAFLFAPNFHPSFRN CCEEEHHCCCHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCC VGPIRRELGIRTLFNLLGPLINPARPTHILLGVARPELVELLAETLRQSHIRKAAVVYGA CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCEEEEEEEC GGYDEVTPLGPTKMMIIHNGRLTPMSLDPLDYGIQPCNPEELAVHSKSEAVDVLKNILAG CCCCCCCCCCCEEEEEEECCEECCEECCHHHCCCCCCCHHHHEECCHHHHHHHHHHHHCC KGPRAMMDMVILNVGVAMFLLEEHMDLSVCMAKAREAVCAGIGRRTLHAA CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHCCC >Mature Secondary Structure MFLFIDNYDSFSWNLVQAFYALGRKPVVHANDDSRILELATSPELEAVCISPGPSHPRNA CEEEEECCCCCCHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCCCCCC GLCLEFLKRLPASVPVLGVCLGHQLLGYFAGAEVSRAPYVMHGKSSDIIHDGAGLFSGLP CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEECCCHHHCCCC NPMTVGRYHSLVVQSKEDEPNPRFTVTSRGPEGEVMALRYNDRPWVGIQFHPESILTPNG CCCCCCCHHEEEEECCCCCCCCCEEEECCCCCCCEEEEEECCCCEEEEEECCCCCCCCCC LQLLGNFPDNVVPSGQKEKRISRILDALAAGQDLTADMAAAGFADIMDGRMTPAQAGCFL HHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHCCEEE MGLRMKGETPLEMAHAVGIALGRANRVEGLEGDCIDVVGTGGDGRNSFNCSTATALTLAG EEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHC MGYRVVKHGNRAVSSSCGSADALEGLGFPLDVAPEDVRRLLDERNFAFLFAPNFHPSFRN CCEEEHHCCCHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCC VGPIRRELGIRTLFNLLGPLINPARPTHILLGVARPELVELLAETLRQSHIRKAAVVYGA CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCEEEEEEEC GGYDEVTPLGPTKMMIIHNGRLTPMSLDPLDYGIQPCNPEELAVHSKSEAVDVLKNILAG CCCCCCCCCCCEEEEEEECCEECCEECCHHHCCCCCCCHHHHEECCHHHHHHHHHHHHCC KGPRAMMDMVILNVGVAMFLLEEHMDLSVCMAKAREAVCAGIGRRTLHAA CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA