Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736020
Identifier: 187736020
GI number: 187736020
Start: 1831435
End: 1832352
Strand: Direct
Name: 187736020
Synonym: Amuc_1530
Alternate gene names: NA
Gene position: 1831435-1832352 (Clockwise)
Preceding gene: 187736019
Following gene: 187736021
Centisome position: 68.74
GC content: 48.69
Gene sequence:
>918_bases ATGACCCTGTTACCTCCTTTATGCGCATGTGCCGTCTGCCTAGTAATCGGGAAGGGCAATCAGGCCTATTCCGATTCTCC CCTGGAGAACCCGGCGTGCATCGACCAGTACAAACAGCCGTCCGCAACCATTCGGGAACTCTCCGGTTTGCTGAAGGACA TGCGGCTCAAATCCTTCTATAACGGGGCCAGGAAACATACGCTCACCTTTAGTTTGGCGACTCGGGATAACATTGATACC GAGCTGAAAGAGAAAATATGGAATTATTATCTGGTAGCCTCGGCTCCCCTTTTTACCTACAAAACGTATCGGGAAATCGA GCCGGATGTTGATATGGGCGATGATAGGGCTGATATTCACCGCAAGTCCGAAGCCTGCCTCCTCATGGAAAAATATATCG GCCTGGTCCGGAAGACGAACAAAATCAAGGAACCCGTTAAAAATCAGATCATCCGGCGCCTGTTTCTTCCCTATTACGCG CGCATCCTGAAACAGTACAAAAACGCGCAGGAGCCCAATCCCTACCAGAGGGATGCCCAGGGAAATCCCGTCCCTCCCCT TTCCGACAAGGAAAAGGAATTCCGGAAGCGTGAGATAGAAAGAATCAAACGTCTCCCCGTTCAGGAAGTCCTCAAACTGA TGCGTGAAGGTTCAAGCCACCGTTCTTTTATCGAGACGAGAAATGAAGTATTTGGAGACGAAGTCAAGCATCTTGAAAAA GCCTTGATGAAACTGCTTGTTTCCGAATTCCCCGGTCAATACGGCAAGGTTGAGAATTTTATTCTGGAAGCCGGATATTC AAAAGAAGACATCCCCGGTTTGATTGACCGCACCGTGGGCAGGGACGAAAAGACGGATTTCCTTTATAAAGGGAAACATC GTCAGAAACATGACAAGCTCTACAGGAAAAAGAAGTGA
Upstream 100 bases:
>100_bases AAAATATTCTATTGAAGCTTTGGACCAGCGTACGACAAAAACGGTCGTTGAAAAATTCGGGTTCACGTTTAAAAGAAACA GCAATGAGGATTAAAAAACA
Downstream 100 bases:
>100_bases TGGTGTCCAGCCCCGAATGTTTAAGACGTTCTTTCTCCCTTTTCTTTTTGTGAAGAGATATGTCGGAAACCGGGGGGAGT GAAGAAGGCTCGAGTCCGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 305; Mature: 304
Protein sequence:
>305_residues MTLLPPLCACAVCLVIGKGNQAYSDSPLENPACIDQYKQPSATIRELSGLLKDMRLKSFYNGARKHTLTFSLATRDNIDT ELKEKIWNYYLVASAPLFTYKTYREIEPDVDMGDDRADIHRKSEACLLMEKYIGLVRKTNKIKEPVKNQIIRRLFLPYYA RILKQYKNAQEPNPYQRDAQGNPVPPLSDKEKEFRKREIERIKRLPVQEVLKLMREGSSHRSFIETRNEVFGDEVKHLEK ALMKLLVSEFPGQYGKVENFILEAGYSKEDIPGLIDRTVGRDEKTDFLYKGKHRQKHDKLYRKKK
Sequences:
>Translated_305_residues MTLLPPLCACAVCLVIGKGNQAYSDSPLENPACIDQYKQPSATIRELSGLLKDMRLKSFYNGARKHTLTFSLATRDNIDT ELKEKIWNYYLVASAPLFTYKTYREIEPDVDMGDDRADIHRKSEACLLMEKYIGLVRKTNKIKEPVKNQIIRRLFLPYYA RILKQYKNAQEPNPYQRDAQGNPVPPLSDKEKEFRKREIERIKRLPVQEVLKLMREGSSHRSFIETRNEVFGDEVKHLEK ALMKLLVSEFPGQYGKVENFILEAGYSKEDIPGLIDRTVGRDEKTDFLYKGKHRQKHDKLYRKKK >Mature_304_residues TLLPPLCACAVCLVIGKGNQAYSDSPLENPACIDQYKQPSATIRELSGLLKDMRLKSFYNGARKHTLTFSLATRDNIDTE LKEKIWNYYLVASAPLFTYKTYREIEPDVDMGDDRADIHRKSEACLLMEKYIGLVRKTNKIKEPVKNQIIRRLFLPYYAR ILKQYKNAQEPNPYQRDAQGNPVPPLSDKEKEFRKREIERIKRLPVQEVLKLMREGSSHRSFIETRNEVFGDEVKHLEKA LMKLLVSEFPGQYGKVENFILEAGYSKEDIPGLIDRTVGRDEKTDFLYKGKHRQKHDKLYRKKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35564; Mature: 35432
Theoretical pI: Translated: 9.79; Mature: 9.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLLPPLCACAVCLVIGKGNQAYSDSPLENPACIDQYKQPSATIRELSGLLKDMRLKSFY CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHH NGARKHTLTFSLATRDNIDTELKEKIWNYYLVASAPLFTYKTYREIEPDVDMGDDRADIH CCHHHHEEEEEECCCCCCCHHHHHHHHHHHHEECCCHHHHHHHHHCCCCCCCCCCHHHHH RKSEACLLMEKYIGLVRKTNKIKEPVKNQIIRRLFLPYYARILKQYKNAQEPNPYQRDAQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC GNPVPPLSDKEKEFRKREIERIKRLPVQEVLKLMREGSSHRSFIETRNEVFGDEVKHLEK CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH ALMKLLVSEFPGQYGKVENFILEAGYSKEDIPGLIDRTVGRDEKTDFLYKGKHRQKHDKL HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCHHHCCCCHHHHHHH YRKKK HHCCC >Mature Secondary Structure TLLPPLCACAVCLVIGKGNQAYSDSPLENPACIDQYKQPSATIRELSGLLKDMRLKSFY CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHH NGARKHTLTFSLATRDNIDTELKEKIWNYYLVASAPLFTYKTYREIEPDVDMGDDRADIH CCHHHHEEEEEECCCCCCCHHHHHHHHHHHHEECCCHHHHHHHHHCCCCCCCCCCHHHHH RKSEACLLMEKYIGLVRKTNKIKEPVKNQIIRRLFLPYYARILKQYKNAQEPNPYQRDAQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC GNPVPPLSDKEKEFRKREIERIKRLPVQEVLKLMREGSSHRSFIETRNEVFGDEVKHLEK CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH ALMKLLVSEFPGQYGKVENFILEAGYSKEDIPGLIDRTVGRDEKTDFLYKGKHRQKHDKL HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCHHHCCCCHHHHHHH YRKKK HHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA