Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is pilD [H]
Identifier: 187735993
GI number: 187735993
Start: 1795197
End: 1796312
Strand: Reverse
Name: pilD [H]
Synonym: Amuc_1503
Alternate gene names: 187735993
Gene position: 1796312-1795197 (Counterclockwise)
Preceding gene: 187735994
Following gene: 187735989
Centisome position: 67.43
GC content: 59.95
Gene sequence:
>1116_bases ATGCCTGACGCCTTTCCCGCATGGGTGATTCCCGTGGTTTTCGGCCTGATGGGGGCCTGCATAGGCTCCTTCCTGAACGT GGTTATCTACCGCATGCCGCGGGGCGTCTCCGTCAACGATCCGGCGCGTTCCTTCTGCCCGGAATGCGGAAAACCCATTC CCTGGTTCCTGAATATTCCGGTTCTGAGCTGGCTGGCTCTCCGGGGTAAATCCGCCTGCTGCGGAACGCGCATCAGCTTC CGATATTGCTTTGTGGAGCTGCTCACGGCCCTGCTCTTCGTGGCCATTGGCTGGAAATACGCGGACGCTTCCACAGGAGC AGCCGTCCTGCTCTGCCTGTGGACTGCCATGGCCATTGTCATCATGTTCATTGACGCGGAACATCTGATTGTCTTCCGCT CTCAGGCATTTATCGGCGCCTTGGCCGGAACGGGGGCCTGCGCCCTTTACCCTTTCCTCCTGCCGGACAGCCATGTCATG ACCTGGACGGACGCCTTCACGGCATCCGTGCTGGGAGGAGCGGCAGGGTATGCGGTCATCAGGCTGGTGATTGAATTGGG GAAGCTTCTGTTCGGCACCTGGAAACAGCATTTTGACGTTCCCGCCCCGTGGAGTTTGAGGGAACCGGAATCCGAGCGGG AGGAACTTCAGCTCATCGTCAACGGCCAGCCTCACGACTGGTCCATGCTTTTCCACCGGTCTACGGACAAGGCCGTCCTT TCCGGAGGTTCCGTCACCATTGACGGCAAAACGCACCCTGCCTGCTCCGTCACGCTGCGGTACGACAGGATAGAGATGGA AAACGGGGACGTTTTTCTTCTGGAAAGACTGGAAAGCGTGGAGGGAAATCTGACGGATATCCATGCCAGCAGGGAAGCCA TGGGATCAGGCGACGCCTGGATTCTGATGATGGCCGGATGCGCGTGCGGCTGGCAGGGCGCCCTGTTCAGCCTTTTCCTC GGCTCCCTGCTGGGGATTGTACAGGCTGCCGCCTCACGCATGGGGTTCGGCAGAAACCTCCCCTTTGGCCCCGCTCTTCT CAGCGCCGCTCTGATCTGGCTGCTGGGCGGCAGCCAGTGGTGGCAGGCCTACATTCGCTTTATTTCCGGCGAATAA
Upstream 100 bases:
>100_bases CGGCTCGTCTTCCCCATCAAACGCGGCAACTACGGCAGGCTGAGGTTGCTGATTGACCGCATCAACCAGACGCCCAGCCG AACCTATTCCCCGCCCACCC
Downstream 100 bases:
>100_bases TTTTTTCCGCTATGACACGGGCGGCACGCACTCGCACCCGATTGCTGTATTCCCTCACTGATTTCCTTCATATTCAATGG GTTCACCCTTCTTTACCCCG
Product: peptidase A24A domain protein
Products: NA
Alternate protein names: Leader peptidase; Prepilin peptidase; N-methyltransferase [H]
Number of amino acids: Translated: 371; Mature: 370
Protein sequence:
>371_residues MPDAFPAWVIPVVFGLMGACIGSFLNVVIYRMPRGVSVNDPARSFCPECGKPIPWFLNIPVLSWLALRGKSACCGTRISF RYCFVELLTALLFVAIGWKYADASTGAAVLLCLWTAMAIVIMFIDAEHLIVFRSQAFIGALAGTGACALYPFLLPDSHVM TWTDAFTASVLGGAAGYAVIRLVIELGKLLFGTWKQHFDVPAPWSLREPESEREELQLIVNGQPHDWSMLFHRSTDKAVL SGGSVTIDGKTHPACSVTLRYDRIEMENGDVFLLERLESVEGNLTDIHASREAMGSGDAWILMMAGCACGWQGALFSLFL GSLLGIVQAAASRMGFGRNLPFGPALLSAALIWLLGGSQWWQAYIRFISGE
Sequences:
>Translated_371_residues MPDAFPAWVIPVVFGLMGACIGSFLNVVIYRMPRGVSVNDPARSFCPECGKPIPWFLNIPVLSWLALRGKSACCGTRISF RYCFVELLTALLFVAIGWKYADASTGAAVLLCLWTAMAIVIMFIDAEHLIVFRSQAFIGALAGTGACALYPFLLPDSHVM TWTDAFTASVLGGAAGYAVIRLVIELGKLLFGTWKQHFDVPAPWSLREPESEREELQLIVNGQPHDWSMLFHRSTDKAVL SGGSVTIDGKTHPACSVTLRYDRIEMENGDVFLLERLESVEGNLTDIHASREAMGSGDAWILMMAGCACGWQGALFSLFL GSLLGIVQAAASRMGFGRNLPFGPALLSAALIWLLGGSQWWQAYIRFISGE >Mature_370_residues PDAFPAWVIPVVFGLMGACIGSFLNVVIYRMPRGVSVNDPARSFCPECGKPIPWFLNIPVLSWLALRGKSACCGTRISFR YCFVELLTALLFVAIGWKYADASTGAAVLLCLWTAMAIVIMFIDAEHLIVFRSQAFIGALAGTGACALYPFLLPDSHVMT WTDAFTASVLGGAAGYAVIRLVIELGKLLFGTWKQHFDVPAPWSLREPESEREELQLIVNGQPHDWSMLFHRSTDKAVLS GGSVTIDGKTHPACSVTLRYDRIEMENGDVFLLERLESVEGNLTDIHASREAMGSGDAWILMMAGCACGWQGALFSLFLG SLLGIVQAAASRMGFGRNLPFGPALLSAALIWLLGGSQWWQAYIRFISGE
Specific function: Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue [H]
COG id: COG1989
COG function: function code NOU; Type II secretory pathway, prepilin signal peptidase PulO and related peptidases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase A24 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010627 - InterPro: IPR014032 - InterPro: IPR000045 [H]
Pfam domain/function: PF06750 DiS_P_DiS; PF01478 Peptidase_A24 [H]
EC number: =3.4.23.43 [H]
Molecular weight: Translated: 40453; Mature: 40321
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDAFPAWVIPVVFGLMGACIGSFLNVVIYRMPRGVSVNDPARSFCPECGKPIPWFLNIP CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHCCCCCEEECHH VLSWLALRGKSACCGTRISFRYCFVELLTALLFVAIGWKYADASTGAAVLLCLWTAMAIV HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHH IMFIDAEHLIVFRSQAFIGALAGTGACALYPFLLPDSHVMTWTDAFTASVLGGAAGYAVI HHHHCCCEEEEEECHHHHHHHHCCCHHHHHHEECCCCCEEEEHHHHHHHHHCCHHHHHHH RLVIELGKLLFGTWKQHFDVPAPWSLREPESEREELQLIVNGQPHDWSMLFHRSTDKAVL HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHEEEEECCCCCCEEEEEECCCCHHEE SGGSVTIDGKTHPACSVTLRYDRIEMENGDVFLLERLESVEGNLTDIHASREAMGSGDAW CCCCEEECCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCEEHHHHHHHCCCCCEE ILMMAGCACGWQGALFSLFLGSLLGIVQAAASRMGFGRNLPFGPALLSAALIWLLGGSQW EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHH WQAYIRFISGE HHHHHHHHCCC >Mature Secondary Structure PDAFPAWVIPVVFGLMGACIGSFLNVVIYRMPRGVSVNDPARSFCPECGKPIPWFLNIP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHCCCCCEEECHH VLSWLALRGKSACCGTRISFRYCFVELLTALLFVAIGWKYADASTGAAVLLCLWTAMAIV HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHH IMFIDAEHLIVFRSQAFIGALAGTGACALYPFLLPDSHVMTWTDAFTASVLGGAAGYAVI HHHHCCCEEEEEECHHHHHHHHCCCHHHHHHEECCCCCEEEEHHHHHHHHHCCHHHHHHH RLVIELGKLLFGTWKQHFDVPAPWSLREPESEREELQLIVNGQPHDWSMLFHRSTDKAVL HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHEEEEECCCCCCEEEEEECCCCHHEE SGGSVTIDGKTHPACSVTLRYDRIEMENGDVFLLERLESVEGNLTDIHASREAMGSGDAW CCCCEEECCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCEEHHHHHHHCCCCCEE ILMMAGCACGWQGALFSLFLGSLLGIVQAAASRMGFGRNLPFGPALLSAALIWLLGGSQW EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHH WQAYIRFISGE HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA