Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is pilD [H]

Identifier: 187735993

GI number: 187735993

Start: 1795197

End: 1796312

Strand: Reverse

Name: pilD [H]

Synonym: Amuc_1503

Alternate gene names: 187735993

Gene position: 1796312-1795197 (Counterclockwise)

Preceding gene: 187735994

Following gene: 187735989

Centisome position: 67.43

GC content: 59.95

Gene sequence:

>1116_bases
ATGCCTGACGCCTTTCCCGCATGGGTGATTCCCGTGGTTTTCGGCCTGATGGGGGCCTGCATAGGCTCCTTCCTGAACGT
GGTTATCTACCGCATGCCGCGGGGCGTCTCCGTCAACGATCCGGCGCGTTCCTTCTGCCCGGAATGCGGAAAACCCATTC
CCTGGTTCCTGAATATTCCGGTTCTGAGCTGGCTGGCTCTCCGGGGTAAATCCGCCTGCTGCGGAACGCGCATCAGCTTC
CGATATTGCTTTGTGGAGCTGCTCACGGCCCTGCTCTTCGTGGCCATTGGCTGGAAATACGCGGACGCTTCCACAGGAGC
AGCCGTCCTGCTCTGCCTGTGGACTGCCATGGCCATTGTCATCATGTTCATTGACGCGGAACATCTGATTGTCTTCCGCT
CTCAGGCATTTATCGGCGCCTTGGCCGGAACGGGGGCCTGCGCCCTTTACCCTTTCCTCCTGCCGGACAGCCATGTCATG
ACCTGGACGGACGCCTTCACGGCATCCGTGCTGGGAGGAGCGGCAGGGTATGCGGTCATCAGGCTGGTGATTGAATTGGG
GAAGCTTCTGTTCGGCACCTGGAAACAGCATTTTGACGTTCCCGCCCCGTGGAGTTTGAGGGAACCGGAATCCGAGCGGG
AGGAACTTCAGCTCATCGTCAACGGCCAGCCTCACGACTGGTCCATGCTTTTCCACCGGTCTACGGACAAGGCCGTCCTT
TCCGGAGGTTCCGTCACCATTGACGGCAAAACGCACCCTGCCTGCTCCGTCACGCTGCGGTACGACAGGATAGAGATGGA
AAACGGGGACGTTTTTCTTCTGGAAAGACTGGAAAGCGTGGAGGGAAATCTGACGGATATCCATGCCAGCAGGGAAGCCA
TGGGATCAGGCGACGCCTGGATTCTGATGATGGCCGGATGCGCGTGCGGCTGGCAGGGCGCCCTGTTCAGCCTTTTCCTC
GGCTCCCTGCTGGGGATTGTACAGGCTGCCGCCTCACGCATGGGGTTCGGCAGAAACCTCCCCTTTGGCCCCGCTCTTCT
CAGCGCCGCTCTGATCTGGCTGCTGGGCGGCAGCCAGTGGTGGCAGGCCTACATTCGCTTTATTTCCGGCGAATAA

Upstream 100 bases:

>100_bases
CGGCTCGTCTTCCCCATCAAACGCGGCAACTACGGCAGGCTGAGGTTGCTGATTGACCGCATCAACCAGACGCCCAGCCG
AACCTATTCCCCGCCCACCC

Downstream 100 bases:

>100_bases
TTTTTTCCGCTATGACACGGGCGGCACGCACTCGCACCCGATTGCTGTATTCCCTCACTGATTTCCTTCATATTCAATGG
GTTCACCCTTCTTTACCCCG

Product: peptidase A24A domain protein

Products: NA

Alternate protein names: Leader peptidase; Prepilin peptidase; N-methyltransferase [H]

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MPDAFPAWVIPVVFGLMGACIGSFLNVVIYRMPRGVSVNDPARSFCPECGKPIPWFLNIPVLSWLALRGKSACCGTRISF
RYCFVELLTALLFVAIGWKYADASTGAAVLLCLWTAMAIVIMFIDAEHLIVFRSQAFIGALAGTGACALYPFLLPDSHVM
TWTDAFTASVLGGAAGYAVIRLVIELGKLLFGTWKQHFDVPAPWSLREPESEREELQLIVNGQPHDWSMLFHRSTDKAVL
SGGSVTIDGKTHPACSVTLRYDRIEMENGDVFLLERLESVEGNLTDIHASREAMGSGDAWILMMAGCACGWQGALFSLFL
GSLLGIVQAAASRMGFGRNLPFGPALLSAALIWLLGGSQWWQAYIRFISGE

Sequences:

>Translated_371_residues
MPDAFPAWVIPVVFGLMGACIGSFLNVVIYRMPRGVSVNDPARSFCPECGKPIPWFLNIPVLSWLALRGKSACCGTRISF
RYCFVELLTALLFVAIGWKYADASTGAAVLLCLWTAMAIVIMFIDAEHLIVFRSQAFIGALAGTGACALYPFLLPDSHVM
TWTDAFTASVLGGAAGYAVIRLVIELGKLLFGTWKQHFDVPAPWSLREPESEREELQLIVNGQPHDWSMLFHRSTDKAVL
SGGSVTIDGKTHPACSVTLRYDRIEMENGDVFLLERLESVEGNLTDIHASREAMGSGDAWILMMAGCACGWQGALFSLFL
GSLLGIVQAAASRMGFGRNLPFGPALLSAALIWLLGGSQWWQAYIRFISGE
>Mature_370_residues
PDAFPAWVIPVVFGLMGACIGSFLNVVIYRMPRGVSVNDPARSFCPECGKPIPWFLNIPVLSWLALRGKSACCGTRISFR
YCFVELLTALLFVAIGWKYADASTGAAVLLCLWTAMAIVIMFIDAEHLIVFRSQAFIGALAGTGACALYPFLLPDSHVMT
WTDAFTASVLGGAAGYAVIRLVIELGKLLFGTWKQHFDVPAPWSLREPESEREELQLIVNGQPHDWSMLFHRSTDKAVLS
GGSVTIDGKTHPACSVTLRYDRIEMENGDVFLLERLESVEGNLTDIHASREAMGSGDAWILMMAGCACGWQGALFSLFLG
SLLGIVQAAASRMGFGRNLPFGPALLSAALIWLLGGSQWWQAYIRFISGE

Specific function: Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue [H]

COG id: COG1989

COG function: function code NOU; Type II secretory pathway, prepilin signal peptidase PulO and related peptidases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase A24 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010627
- InterPro:   IPR014032
- InterPro:   IPR000045 [H]

Pfam domain/function: PF06750 DiS_P_DiS; PF01478 Peptidase_A24 [H]

EC number: =3.4.23.43 [H]

Molecular weight: Translated: 40453; Mature: 40321

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDAFPAWVIPVVFGLMGACIGSFLNVVIYRMPRGVSVNDPARSFCPECGKPIPWFLNIP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHCCCCCEEECHH
VLSWLALRGKSACCGTRISFRYCFVELLTALLFVAIGWKYADASTGAAVLLCLWTAMAIV
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHH
IMFIDAEHLIVFRSQAFIGALAGTGACALYPFLLPDSHVMTWTDAFTASVLGGAAGYAVI
HHHHCCCEEEEEECHHHHHHHHCCCHHHHHHEECCCCCEEEEHHHHHHHHHCCHHHHHHH
RLVIELGKLLFGTWKQHFDVPAPWSLREPESEREELQLIVNGQPHDWSMLFHRSTDKAVL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHEEEEECCCCCCEEEEEECCCCHHEE
SGGSVTIDGKTHPACSVTLRYDRIEMENGDVFLLERLESVEGNLTDIHASREAMGSGDAW
CCCCEEECCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCEEHHHHHHHCCCCCEE
ILMMAGCACGWQGALFSLFLGSLLGIVQAAASRMGFGRNLPFGPALLSAALIWLLGGSQW
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHH
WQAYIRFISGE
HHHHHHHHCCC
>Mature Secondary Structure 
PDAFPAWVIPVVFGLMGACIGSFLNVVIYRMPRGVSVNDPARSFCPECGKPIPWFLNIP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHCCCCCEEECHH
VLSWLALRGKSACCGTRISFRYCFVELLTALLFVAIGWKYADASTGAAVLLCLWTAMAIV
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHH
IMFIDAEHLIVFRSQAFIGALAGTGACALYPFLLPDSHVMTWTDAFTASVLGGAAGYAVI
HHHHCCCEEEEEECHHHHHHHHCCCHHHHHHEECCCCCEEEEHHHHHHHHHCCHHHHHHH
RLVIELGKLLFGTWKQHFDVPAPWSLREPESEREELQLIVNGQPHDWSMLFHRSTDKAVL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHEEEEECCCCCCEEEEEECCCCHHEE
SGGSVTIDGKTHPACSVTLRYDRIEMENGDVFLLERLESVEGNLTDIHASREAMGSGDAW
CCCCEEECCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCEEHHHHHHHCCCCCEE
ILMMAGCACGWQGALFSLFLGSLLGIVQAAASRMGFGRNLPFGPALLSAALIWLLGGSQW
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHH
WQAYIRFISGE
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA