Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is yfiH [C]
Identifier: 187735989
GI number: 187735989
Start: 1788187
End: 1788876
Strand: Reverse
Name: yfiH [C]
Synonym: Amuc_1498
Alternate gene names: 187735989
Gene position: 1788876-1788187 (Counterclockwise)
Preceding gene: 187735993
Following gene: 187735988
Centisome position: 67.15
GC content: 56.52
Gene sequence:
>690_bases ATGGAAACGCCAGCATTCTTGAAGCCTATCCAGTCCTATCCCGGAGAAATCGTCCAATTCATTGAGAGAATTCCGGGAGT AGACGTCGCCGGAGACCGCGAAACCGTGCTGGAACGGCTGGAACCGTACCATAAGGCGGAAGTGGAAGCCCTGGGCTGGC GGTGGAAAGACCTGCGCCGCGCCGAACAGGTGCACGGCACGAAAGTTGCCCTGGTGGGGGACATCGGCTCCAATTATCCT GTGGAAGGCGTGGACGGCCTGATTTGCTCCGGAGTTTCCGACTGCGTGCTTGCCATTTACGTGGCGGACTGCGCCGCCGT GTGGTTGTACGACAAGGAAAACTGCCACCGTTCCCTGATTCATTCAGGCAAGGCGGGAACCGCCGGCAACATCGTTTCCA ACACCATCAAGTCCATGAAAAAATGCCTTGGGGTGGAACCGTCCAACCTGATTGCCGTCATTTCCCCCTGTATCCGCCCG CCTCATTATGAGGAAGACATTCCTACGGCCATTAAGGCACAGCTCATTGAAGCGGGGGTACCGGAAGAACAGATTCATGA TTCCGGGCTGGACACGGCGGAGGATACCAAACGTTTTTACTCCTACCGCATGGAAAAAGGGCAAACGGGCCGCATGCTGG CCCTTTTCGGCCCGGATCACGCTACGCGGACGCACGCAATTATTCTTTAA
Upstream 100 bases:
>100_bases GTCACCGGGCGGCGTCCGTGACATTTTACACCAAATTTTGCTCGACTAGGTAATACAAAACGACAAGATGTCCCCAACGA CATTTATTGATCCATCAATT
Downstream 100 bases:
>100_bases CAGCGGGAAAGCGGAGCCTTTCATTCCTTTTACAGCACATCACGATTCTGCCGTGGTGCGCTTTTCTGCCTTGTAGTCCA TACACGTTAGCGCTGGATGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 229; Mature: 229
Protein sequence:
>229_residues METPAFLKPIQSYPGEIVQFIERIPGVDVAGDRETVLERLEPYHKAEVEALGWRWKDLRRAEQVHGTKVALVGDIGSNYP VEGVDGLICSGVSDCVLAIYVADCAAVWLYDKENCHRSLIHSGKAGTAGNIVSNTIKSMKKCLGVEPSNLIAVISPCIRP PHYEEDIPTAIKAQLIEAGVPEEQIHDSGLDTAEDTKRFYSYRMEKGQTGRMLALFGPDHATRTHAIIL
Sequences:
>Translated_229_residues METPAFLKPIQSYPGEIVQFIERIPGVDVAGDRETVLERLEPYHKAEVEALGWRWKDLRRAEQVHGTKVALVGDIGSNYP VEGVDGLICSGVSDCVLAIYVADCAAVWLYDKENCHRSLIHSGKAGTAGNIVSNTIKSMKKCLGVEPSNLIAVISPCIRP PHYEEDIPTAIKAQLIEAGVPEEQIHDSGLDTAEDTKRFYSYRMEKGQTGRMLALFGPDHATRTHAIIL >Mature_229_residues METPAFLKPIQSYPGEIVQFIERIPGVDVAGDRETVLERLEPYHKAEVEALGWRWKDLRRAEQVHGTKVALVGDIGSNYP VEGVDGLICSGVSDCVLAIYVADCAAVWLYDKENCHRSLIHSGKAGTAGNIVSNTIKSMKKCLGVEPSNLIAVISPCIRP PHYEEDIPTAIKAQLIEAGVPEEQIHDSGLDTAEDTKRFYSYRMEKGQTGRMLALFGPDHATRTHAIIL
Specific function: Unknown
COG id: COG1496
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0124 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003730 - InterPro: IPR011324 [H]
Pfam domain/function: PF02578 Cu-oxidase_4 [H]
EC number: NA
Molecular weight: Translated: 25196; Mature: 25196
Theoretical pI: Translated: 5.58; Mature: 5.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METPAFLKPIQSYPGEIVQFIERIPGVDVAGDRETVLERLEPYHKAEVEALGWRWKDLRR CCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCHHHHHHH AEQVHGTKVALVGDIGSNYPVEGVDGLICSGVSDCVLAIYVADCAAVWLYDKENCHRSLI HHHHCCCEEEEEECCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHEEECHHHHHHHHH HSGKAGTAGNIVSNTIKSMKKCLGVEPSNLIAVISPCIRPPHYEEDIPTAIKAQLIEAGV HCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC PEEQIHDSGLDTAEDTKRFYSYRMEKGQTGRMLALFGPDHATRTHAIIL CHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEC >Mature Secondary Structure METPAFLKPIQSYPGEIVQFIERIPGVDVAGDRETVLERLEPYHKAEVEALGWRWKDLRR CCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCHHHHHHH AEQVHGTKVALVGDIGSNYPVEGVDGLICSGVSDCVLAIYVADCAAVWLYDKENCHRSLI HHHHCCCEEEEEECCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHEEECHHHHHHHHH HSGKAGTAGNIVSNTIKSMKKCLGVEPSNLIAVISPCIRPPHYEEDIPTAIKAQLIEAGV HCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC PEEQIHDSGLDTAEDTKRFYSYRMEKGQTGRMLALFGPDHATRTHAIIL CHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11418146 [H]