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The map label for this gene is secD [H]

Identifier: 187735992

GI number: 187735992

Start: 1791112

End: 1793493

Strand: Direct

Name: secD [H]

Synonym: Amuc_1501

Alternate gene names: 187735992

Gene position: 1791112-1793493 (Clockwise)

Preceding gene: 187735991

Following gene: 187735995

Centisome position: 67.23

GC content: 53.78

Gene sequence:

>2382_bases
ATGTCCGCTCCTCTCGCCTTCATCTACGATCTCTTCAATAACCCTCTTTTCATCTTCATTGGCGGTCTGGTGTTGCTGGG
TGTGTTTTTCTGGTACCTGGGTTCCGACCAGGACAAGGTCAAGCGCAATGCCGGAACGATTTTCATTATCGGCATTGCGT
CTTTTTCCCTGTTCTCCCTCTTCCAGCAGGGGTTGAAATACGGCATTGACATTGCCGGGGGCGTCTCCTTCACGTTGAGC
GTGGAACCGAATATCGGAGACGACGGCAAGCCCATTCCCCTGACGGACCAGGCCATGGAACAGGCATGCGTGATCCTGAC
GGACCGCCTTAACAGTACCGGGGCCAATGACGTCATTATCCGCCCGAAGAAAAAAGACAACCTGAATCTTATAGAAGTTC
AAATCCCCGCTGCGGATCCTGCCAAGCGCGAGGAAACCAAGGCCATCCTGACCAAAGTAGCCAAGCTTCAGATTCTTCCT
GTCCACCCGCGTAACAACGAACTGGTGGCGGAGGGTCGCATTCGCGTTCCCGGCTACAGGATGTATGAATATACCTTCAA
AAACGGCAAGGGTGAGGACGTCACGGAAAAAATATTCCTGGAAAAGCGTGAATCGCTGACAGGCAGGGATATCGTGCGCG
CCGGAGTGGATCTGGCCCGTCCCGGCCACGTCAACGTCACCCTGAGCAACGAAGGGGCGGACAAGATGTATAACCTGACT
TCCCGCATGCAGCTGGGCCACGACCGCATGGCCATTGTGCTGGATGATGTGGTCAAGAGCGCCCCAACGGTCCAGGCCAT
TCTGTCGAAAAGTTTTGAAATCAGCGGGCTGGATGCTCCCGGAGAGGCTGAAGCCCTGACGAAGGTGCTTTCCAACCCCC
TTACCAACAAGCTCAATTTTGAGTCCGCCAGTGAAATTTCCGCCTCTTTGGGGCATACGGCCCTCCTTCAGGGGGAATAC
GCTGGCATTACGGGATTGATCCTCTGCTTCATCATGATGATCATCTACTACCGCTTTGCCGGTTTGGTGGCTATCATGGG
TCTGACGATCAATGCCCTGCTTCTTCTGGGAGCCATGTCTATCTTCGGGTTTGAGCTGACGCTGCCGGGTATTGCCGGTA
TTGTGCTGACTCTGGGCGTGGCGGTGGACTCGAACGTGTTGATTTATGAACGCCTGCGGGAAGAAAAGGAAATGGGGCGC
CCCTTCCGCGTGGCTATCCGCAACTCCTTTGACAAGGCGTTCTCCGCCATCTTTGACTCCAATATCACCTCGCTCATTAC
CGCCGTCATCCTGTACTGGATGGCAACCGGCACCATCAAGGGGTTTGCCGTCACGTTGACAGTAGGCGTCATCACTTCCA
TGATTGGGGCGATTCTCGTTACCCGCGTCCTGTTCTACTGGGCGGATACCGTCGGCATGATGAAGGATCTTAAATTCCTC
AACCTCTTCAAGAAAAAGACGAACATCGACTTCATGAGCCAGAAAATCTGGTCCTGCTCTCTTTCCGCCATTCTGCTGAT
GATATGCATTGTATTTGGCGCCGTAAAGGGCAAGGATTGCCTGGGCATGGACTTTACGGGCGGTTCTTCCATTTCCTATC
TGGTGAACAAGGGTGACATCTCCTTCCGGGAAGTGGAAGGCGTGGTCAACAAGCTGTCCCTGACCCAGAAGGCTACGGTG
CAGGAGGTGGCGGAGTCCACGGACAGCAGCAAAGTGAATATTCTGATTAATTTCTCCGACCATGCCCAGGACAAGGAGGC
TATCACCACGGCATTGGACAAGGCGTTTCCGGTTCTGGACAACGCTCCGTTCAGTGAAGAAACCATCGGGCAGTCCATGG
GGTACGATACGCTCATTACTTCCGCATGGGCCCTTTTCTTCGGCATTCTGGGAATCATGGTTTACCTGACGGTGCGGTTT
GAATGGACCTTCGCCATTGGTGCGGTCATCGCCCTGACGCATGACGTCCTGCTGGTGCTTGGCCTGGTGATTGTCAGCGG
AACGGAGCTGAATGTTATTCATATTGGCGCGTTGTTGACGGTGGCGGGGTACTCCATCAATGACAAAATTATCGTATTTG
ACCGCATCCGCGAATTCCTCCGCTTCTCCGACCCGAATGAAAGCGCTTCACAAATCATGAACGAAGCCATTAACCAGACG
CTTTCCCGTACTATTTTGACCTCTCTTTCCACGCTGGCCGTGCTGGTGTGCCTGTACTTCTTTGGAGGTCCTTCCATGGA
AGACTTCGCCTGGACGATTTCCGCAGGCATTTTGATTGGTACGTACTCCTCCATCTTCATCGCTTCTCCGGCGGCTCTTT
TCTTCTCCCGGAAGCATGGGTTGCATGAAGAAGTCAGACAGGCCATGAAGGCCGGAGCCTGA

Upstream 100 bases:

>100_bases
ATTTCTCCACAATCTTTTGCCGTATTATTCACACCCAATCCGGATTGAAATGTCTATGAATCTCCTGGCATCTGCCGATA
CTCTACCCGCGCCTGGCGGA

Downstream 100 bases:

>100_bases
GGTTTGGCGTTGAGCCGTTAAATCTCTGACCGGGGAAGGCTGAATGCCTTCCCCGGTCTGTTTCTTGGAAAGAGAGGGAA
AGGCTCTGTATGGAATAACC

Product: protein-export membrane protein SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 793; Mature: 792

Protein sequence:

>793_residues
MSAPLAFIYDLFNNPLFIFIGGLVLLGVFFWYLGSDQDKVKRNAGTIFIIGIASFSLFSLFQQGLKYGIDIAGGVSFTLS
VEPNIGDDGKPIPLTDQAMEQACVILTDRLNSTGANDVIIRPKKKDNLNLIEVQIPAADPAKREETKAILTKVAKLQILP
VHPRNNELVAEGRIRVPGYRMYEYTFKNGKGEDVTEKIFLEKRESLTGRDIVRAGVDLARPGHVNVTLSNEGADKMYNLT
SRMQLGHDRMAIVLDDVVKSAPTVQAILSKSFEISGLDAPGEAEALTKVLSNPLTNKLNFESASEISASLGHTALLQGEY
AGITGLILCFIMMIIYYRFAGLVAIMGLTINALLLLGAMSIFGFELTLPGIAGIVLTLGVAVDSNVLIYERLREEKEMGR
PFRVAIRNSFDKAFSAIFDSNITSLITAVILYWMATGTIKGFAVTLTVGVITSMIGAILVTRVLFYWADTVGMMKDLKFL
NLFKKKTNIDFMSQKIWSCSLSAILLMICIVFGAVKGKDCLGMDFTGGSSISYLVNKGDISFREVEGVVNKLSLTQKATV
QEVAESTDSSKVNILINFSDHAQDKEAITTALDKAFPVLDNAPFSEETIGQSMGYDTLITSAWALFFGILGIMVYLTVRF
EWTFAIGAVIALTHDVLLVLGLVIVSGTELNVIHIGALLTVAGYSINDKIIVFDRIREFLRFSDPNESASQIMNEAINQT
LSRTILTSLSTLAVLVCLYFFGGPSMEDFAWTISAGILIGTYSSIFIASPAALFFSRKHGLHEEVRQAMKAGA

Sequences:

>Translated_793_residues
MSAPLAFIYDLFNNPLFIFIGGLVLLGVFFWYLGSDQDKVKRNAGTIFIIGIASFSLFSLFQQGLKYGIDIAGGVSFTLS
VEPNIGDDGKPIPLTDQAMEQACVILTDRLNSTGANDVIIRPKKKDNLNLIEVQIPAADPAKREETKAILTKVAKLQILP
VHPRNNELVAEGRIRVPGYRMYEYTFKNGKGEDVTEKIFLEKRESLTGRDIVRAGVDLARPGHVNVTLSNEGADKMYNLT
SRMQLGHDRMAIVLDDVVKSAPTVQAILSKSFEISGLDAPGEAEALTKVLSNPLTNKLNFESASEISASLGHTALLQGEY
AGITGLILCFIMMIIYYRFAGLVAIMGLTINALLLLGAMSIFGFELTLPGIAGIVLTLGVAVDSNVLIYERLREEKEMGR
PFRVAIRNSFDKAFSAIFDSNITSLITAVILYWMATGTIKGFAVTLTVGVITSMIGAILVTRVLFYWADTVGMMKDLKFL
NLFKKKTNIDFMSQKIWSCSLSAILLMICIVFGAVKGKDCLGMDFTGGSSISYLVNKGDISFREVEGVVNKLSLTQKATV
QEVAESTDSSKVNILINFSDHAQDKEAITTALDKAFPVLDNAPFSEETIGQSMGYDTLITSAWALFFGILGIMVYLTVRF
EWTFAIGAVIALTHDVLLVLGLVIVSGTELNVIHIGALLTVAGYSINDKIIVFDRIREFLRFSDPNESASQIMNEAINQT
LSRTILTSLSTLAVLVCLYFFGGPSMEDFAWTISAGILIGTYSSIFIASPAALFFSRKHGLHEEVRQAMKAGA
>Mature_792_residues
SAPLAFIYDLFNNPLFIFIGGLVLLGVFFWYLGSDQDKVKRNAGTIFIIGIASFSLFSLFQQGLKYGIDIAGGVSFTLSV
EPNIGDDGKPIPLTDQAMEQACVILTDRLNSTGANDVIIRPKKKDNLNLIEVQIPAADPAKREETKAILTKVAKLQILPV
HPRNNELVAEGRIRVPGYRMYEYTFKNGKGEDVTEKIFLEKRESLTGRDIVRAGVDLARPGHVNVTLSNEGADKMYNLTS
RMQLGHDRMAIVLDDVVKSAPTVQAILSKSFEISGLDAPGEAEALTKVLSNPLTNKLNFESASEISASLGHTALLQGEYA
GITGLILCFIMMIIYYRFAGLVAIMGLTINALLLLGAMSIFGFELTLPGIAGIVLTLGVAVDSNVLIYERLREEKEMGRP
FRVAIRNSFDKAFSAIFDSNITSLITAVILYWMATGTIKGFAVTLTVGVITSMIGAILVTRVLFYWADTVGMMKDLKFLN
LFKKKTNIDFMSQKIWSCSLSAILLMICIVFGAVKGKDCLGMDFTGGSSISYLVNKGDISFREVEGVVNKLSLTQKATVQ
EVAESTDSSKVNILINFSDHAQDKEAITTALDKAFPVLDNAPFSEETIGQSMGYDTLITSAWALFFGILGIMVYLTVRFE
WTFAIGAVIALTHDVLLVLGLVIVSGTELNVIHIGALLTVAGYSINDKIIVFDRIREFLRFSDPNESASQIMNEAINQTL
SRTILTSLSTLAVLVCLYFFGGPSMEDFAWTISAGILIGTYSSIFIASPAALFFSRKHGLHEEVRQAMKAGA

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=388, Percent_Identity=35.0515463917526, Blast_Score=182, Evalue=1e-46,
Organism=Escherichia coli, GI1786610, Length=323, Percent_Identity=34.984520123839, Blast_Score=164, Evalue=3e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 86580; Mature: 86449

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS00687 ALDEHYDE_DEHYDR_GLU ; PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPLAFIYDLFNNPLFIFIGGLVLLGVFFWYLGSDQDKVKRNAGTIFIIGIASFSLFSL
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEEHHHHHHHHH
FQQGLKYGIDIAGGVSFTLSVEPNIGDDGKPIPLTDQAMEQACVILTDRLNSTGANDVII
HHHHHHHCCEEECCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEE
RPKKKDNLNLIEVQIPAADPAKREETKAILTKVAKLQILPVHPRNNELVAEGRIRVPGYR
CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHEEEEECCCCCCCEEECCEEECCCEE
MYEYTFKNGKGEDVTEKIFLEKRESLTGRDIVRAGVDLARPGHVNVTLSNEGADKMYNLT
EEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHH
SRMQLGHDRMAIVLDDVVKSAPTVQAILSKSFEISGLDAPGEAEALTKVLSNPLTNKLNF
HHHHCCCCHHHHHHHHHHCCCCHHHHHHHCCCEECCCCCCCHHHHHHHHHCCCCCCCCCC
ESASEISASLGHTALLQGEYAGITGLILCFIMMIIYYRFAGLVAIMGLTINALLLLGAMS
CCHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFGFELTLPGIAGIVLTLGVAVDSNVLIYERLREEKEMGRPFRVAIRNSFDKAFSAIFDS
HHCEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCC
NITSLITAVILYWMATGTIKGFAVTLTVGVITSMIGAILVTRVLFYWADTVGMMKDLKFL
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLFKKKTNIDFMSQKIWSCSLSAILLMICIVFGAVKGKDCLGMDFTGGSSISYLVNKGDI
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC
SFREVEGVVNKLSLTQKATVQEVAESTDSSKVNILINFSDHAQDKEAITTALDKAFPVLD
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCC
NAPFSEETIGQSMGYDTLITSAWALFFGILGIMVYLTVRFEWTFAIGAVIALTHDVLLVL
CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHH
GLVIVSGTELNVIHIGALLTVAGYSINDKIIVFDRIREFLRFSDPNESASQIMNEAINQT
HHHHHCCCCEEEEEHHHHHHHCCCCCCCCEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHH
LSRTILTSLSTLAVLVCLYFFGGPSMEDFAWTISAGILIGTYSSIFIASPAALFFSRKHG
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEECCCHHHHCCHHHHHHHHHCC
LHEEVRQAMKAGA
HHHHHHHHHHCCC
>Mature Secondary Structure 
SAPLAFIYDLFNNPLFIFIGGLVLLGVFFWYLGSDQDKVKRNAGTIFIIGIASFSLFSL
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEEHHHHHHHHH
FQQGLKYGIDIAGGVSFTLSVEPNIGDDGKPIPLTDQAMEQACVILTDRLNSTGANDVII
HHHHHHHCCEEECCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEE
RPKKKDNLNLIEVQIPAADPAKREETKAILTKVAKLQILPVHPRNNELVAEGRIRVPGYR
CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHEEEEECCCCCCCEEECCEEECCCEE
MYEYTFKNGKGEDVTEKIFLEKRESLTGRDIVRAGVDLARPGHVNVTLSNEGADKMYNLT
EEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHH
SRMQLGHDRMAIVLDDVVKSAPTVQAILSKSFEISGLDAPGEAEALTKVLSNPLTNKLNF
HHHHCCCCHHHHHHHHHHCCCCHHHHHHHCCCEECCCCCCCHHHHHHHHHCCCCCCCCCC
ESASEISASLGHTALLQGEYAGITGLILCFIMMIIYYRFAGLVAIMGLTINALLLLGAMS
CCHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFGFELTLPGIAGIVLTLGVAVDSNVLIYERLREEKEMGRPFRVAIRNSFDKAFSAIFDS
HHCEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCC
NITSLITAVILYWMATGTIKGFAVTLTVGVITSMIGAILVTRVLFYWADTVGMMKDLKFL
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLFKKKTNIDFMSQKIWSCSLSAILLMICIVFGAVKGKDCLGMDFTGGSSISYLVNKGDI
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC
SFREVEGVVNKLSLTQKATVQEVAESTDSSKVNILINFSDHAQDKEAITTALDKAFPVLD
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCC
NAPFSEETIGQSMGYDTLITSAWALFFGILGIMVYLTVRFEWTFAIGAVIALTHDVLLVL
CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHH
GLVIVSGTELNVIHIGALLTVAGYSINDKIIVFDRIREFLRFSDPNESASQIMNEAINQT
HHHHHCCCCEEEEEHHHHHHHCCCCCCCCEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHH
LSRTILTSLSTLAVLVCLYFFGGPSMEDFAWTISAGILIGTYSSIFIASPAALFFSRKHG
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEECCCHHHHCCHHHHHHHHHCC
LHEEVRQAMKAGA
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9826342 [H]