Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is gluQ [H]
Identifier: 187735982
GI number: 187735982
Start: 1782166
End: 1783011
Strand: Direct
Name: gluQ [H]
Synonym: Amuc_1491
Alternate gene names: 187735982
Gene position: 1782166-1783011 (Clockwise)
Preceding gene: 187735980
Following gene: 187735987
Centisome position: 66.9
GC content: 60.64
Gene sequence:
>846_bases ATGGATTCCCCCATAATAACAAGGTTTGCTCCCAGCCCTACAGGCAATCTCCATCTGGGGCACGCCCTGGCTGCGTGGGA AGCCCGTTCCCTGGCGAACCGTTTTTCCGGGAAGTGCGTGCTGAGGATGGAAGATATCGACCAGACGCGGTGCCGTCCGG AGTTTGTTCAGGGCATATTGAAAGATCTGGAGTGGCTGGGCATCCGCTTTGACGGTCCCATGATGGTTCAGTCTTCACGC TTCAGCGCTTATGAACACGCTCTTCAGACGCTGAAGGACCGGGGCGTGCTGTACCCCTGTTTCTGTACGCGCCGGGAGAT TGCGGAGGAGGTGGCCGCCATGGGTGGGGCGCCGCAGGGGGGCTGCGTGGACGTATATCCGGGAACTTGCCGGCTGCTTG ACAAGGGGCGCAGGAAAGAGCTTCTCAAATCCGGCAAACCTTTTTCCTGGCGGCTGGATTGCCGTGCTGCGGCGCGGATT ACCGGTCCCCTGCTATGGAGGGACATGCGGTTCGGAGATCAGGTTTGCCGTCCAGAAGAACTGGGGGATGTGATTCTGGG CCGCAAGGACTGCGCCGCCAGCTACCATATTGCCGTGGTTGTGGACGACGCTGCCCAGGGAGTTACCCATGTAAGCCGTG GTGAGGATTTATTCCCTGTGACGGGCATCCACCGGACGCTCCAGGCCCTGTTGGAGCTTCCTGTTCCGCAGTGGTATCAT CACCGGCTGGTGAAGGATGCTTCCGGCAAGCGGCTTGCCAAGAGGGACAGGAGCCTGAGCCTTCAGGAAATGCGTGCCGC CGGGATGCGGCCGGAAGACGTGTTCCGGCTGATGCGGGAGAGCTGA
Upstream 100 bases:
>100_bases CCAACTCTCCTACTTTCCCGGCTTCTATCTGTCAAGCCGCAATAATTTTCCGGAAAGGGTTTGAAAAGGTTCCTGCGCTT TTTTATTGTTGGTGCGCCGC
Downstream 100 bases:
>100_bases GGGATTTTCATTCCCTTATAGGCGGGGGTGCGTTGTTACGCCGGGAAAGGCAGGGGTCAGGCTGTGGCTTGCGTTTTTCC AGCAGCCGGTCGGGTGATTT
Product: glutamyl-tRNA synthetase class Ic
Products: AMP; L-Glutamyl-tRNA(Glu); Diphosphate [C]
Alternate protein names: Glu-Q-RSs [H]
Number of amino acids: Translated: 281; Mature: 281
Protein sequence:
>281_residues MDSPIITRFAPSPTGNLHLGHALAAWEARSLANRFSGKCVLRMEDIDQTRCRPEFVQGILKDLEWLGIRFDGPMMVQSSR FSAYEHALQTLKDRGVLYPCFCTRREIAEEVAAMGGAPQGGCVDVYPGTCRLLDKGRRKELLKSGKPFSWRLDCRAAARI TGPLLWRDMRFGDQVCRPEELGDVILGRKDCAASYHIAVVVDDAAQGVTHVSRGEDLFPVTGIHRTLQALLELPVPQWYH HRLVKDASGKRLAKRDRSLSLQEMRAAGMRPEDVFRLMRES
Sequences:
>Translated_281_residues MDSPIITRFAPSPTGNLHLGHALAAWEARSLANRFSGKCVLRMEDIDQTRCRPEFVQGILKDLEWLGIRFDGPMMVQSSR FSAYEHALQTLKDRGVLYPCFCTRREIAEEVAAMGGAPQGGCVDVYPGTCRLLDKGRRKELLKSGKPFSWRLDCRAAARI TGPLLWRDMRFGDQVCRPEELGDVILGRKDCAASYHIAVVVDDAAQGVTHVSRGEDLFPVTGIHRTLQALLELPVPQWYH HRLVKDASGKRLAKRDRSLSLQEMRAAGMRPEDVFRLMRES >Mature_281_residues MDSPIITRFAPSPTGNLHLGHALAAWEARSLANRFSGKCVLRMEDIDQTRCRPEFVQGILKDLEWLGIRFDGPMMVQSSR FSAYEHALQTLKDRGVLYPCFCTRREIAEEVAAMGGAPQGGCVDVYPGTCRLLDKGRRKELLKSGKPFSWRLDCRAAARI TGPLLWRDMRFGDQVCRPEELGDVILGRKDCAASYHIAVVVDDAAQGVTHVSRGEDLFPVTGIHRTLQALLELPVPQWYH HRLVKDASGKRLAKRDRSLSLQEMRAAGMRPEDVFRLMRES
Specific function: Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble positi
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily [H]
Homologues:
Organism=Homo sapiens, GI134288884, Length=288, Percent_Identity=31.9444444444444, Blast_Score=120, Evalue=1e-27, Organism=Escherichia coli, GI1788743, Length=277, Percent_Identity=32.129963898917, Blast_Score=137, Evalue=7e-34, Organism=Escherichia coli, GI226510925, Length=266, Percent_Identity=34.2105263157895, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1786895, Length=107, Percent_Identity=31.7757009345794, Blast_Score=67, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71993394, Length=282, Percent_Identity=28.7234042553192, Blast_Score=104, Evalue=5e-23, Organism=Saccharomyces cerevisiae, GI6324540, Length=276, Percent_Identity=32.2463768115942, Blast_Score=133, Evalue=3e-32, Organism=Saccharomyces cerevisiae, GI6321192, Length=91, Percent_Identity=37.3626373626374, Blast_Score=70, Evalue=3e-13, Organism=Drosophila melanogaster, GI24665321, Length=282, Percent_Identity=32.9787234042553, Blast_Score=126, Evalue=2e-29,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001412 - InterPro: IPR022380 - InterPro: IPR000924 - InterPro: IPR020058 - InterPro: IPR014729 [H]
Pfam domain/function: PF00749 tRNA-synt_1c [H]
EC number: 6.1.1.17 [C]
Molecular weight: Translated: 31631; Mature: 31631
Theoretical pI: Translated: 8.81; Mature: 8.81
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSPIITRFAPSPTGNLHLGHALAAWEARSLANRFSGKCVLRMEDIDQTRCRPEFVQGIL CCCCCEEEECCCCCCCEEECHHHHHHHHHHHHHHCCCEEEEEECCCCHHCCCHHHHHHHH KDLEWLGIRFDGPMMVQSSRFSAYEHALQTLKDRGVLYPCFCTRREIAEEVAAMGGAPQG HHHHHHEEEECCCEEEECCHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCCCCC GCVDVYPGTCRLLDKGRRKELLKSGKPFSWRLDCRAAARITGPLLWRDMRFGDQVCRPEE CEEECCCCHHHHHCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCHHCCCHHH LGDVILGRKDCAASYHIAVVVDDAAQGVTHVSRGEDLFPVTGIHRTLQALLELPVPQWYH HHHHHHCCHHCCCCEEEEEEECCHHHCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHH HRLVKDASGKRLAKRDRSLSLQEMRAAGMRPEDVFRLMRES HHHHHCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHCC >Mature Secondary Structure MDSPIITRFAPSPTGNLHLGHALAAWEARSLANRFSGKCVLRMEDIDQTRCRPEFVQGIL CCCCCEEEECCCCCCCEEECHHHHHHHHHHHHHHCCCEEEEEECCCCHHCCCHHHHHHHH KDLEWLGIRFDGPMMVQSSRFSAYEHALQTLKDRGVLYPCFCTRREIAEEVAAMGGAPQG HHHHHHEEEECCCEEEECCHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCCCCC GCVDVYPGTCRLLDKGRRKELLKSGKPFSWRLDCRAAARITGPLLWRDMRFGDQVCRPEE CEEECCCCHHHHHCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCHHCCCHHH LGDVILGRKDCAASYHIAVVVDDAAQGVTHVSRGEDLFPVTGIHRTLQALLELPVPQWYH HHHHHHCCHHCCCCEEEEEEECCHHHCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHH HRLVKDASGKRLAKRDRSLSLQEMRAAGMRPEDVFRLMRES HHHHHCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-Glutamate; tRNA (Glu) [C]
Specific reaction: ATP + L-Glutamate + tRNA (Glu) --> AMP + L-Glutamyl-tRNA(Glu) + Diphosphate [C]
General reaction: Aminoacylation; Esterification [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA