Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735959
Identifier: 187735959
GI number: 187735959
Start: 1759965
End: 1760630
Strand: Direct
Name: 187735959
Synonym: Amuc_1468
Alternate gene names: NA
Gene position: 1759965-1760630 (Clockwise)
Preceding gene: 187735953
Following gene: 187735962
Centisome position: 66.06
GC content: 59.46
Gene sequence:
>666_bases ATGGGGGCCGTCATGCATTTTCAAAGGACGCTGAATCGGTTTTCCCGCGAAAACGTTCCCGGGTATCTGGCTGTGTTCAT CGGCGGTTTCGGGGACATGTTTGCGGGTTGTTTGAGCCGTGTGGAGAAAGGATTTCCCGGTTTTTTGCCGGGTGTGGAGT ACGCAACGGCTTATTACCACTGGGACGGAGGCGGCTGCGGCGTGTTTTTTGACAGGTGCGGAAAAATAGCGGTGGAGCTG GAAGAGCTGAGACGGAGATATCCCGGGCTGCCTGTCGTGTTGATAGGACACAGCTACGGAGGCTCCTGCGCGGTGGAAGT AGCCAGGCGCCAGTCGGTTCAGGCTGCTCCTCTTTGCCTCCTGACGGTAGATGCCGTGGCGCGCAGGCAAAAGAGCGTGC GTCCGGCCTGTGTGGAATGGTGGGGGAACGCTTACCTGCAGGATGGCGGCGGCTTCATGGACGCGGTGCCCAGAATAGGC GGACGCTGGGGACATTGCGCCGGGGCTGATGCCAATCTTGCTTTTTCCGGCTACAGTCGTGACCGGGAGGGCCGCCTTTA TTCTCACCGGCGTCCTGCGCCCATGCTTTATGAGCCGCCTGGGGAAGAAGCATGCAGCCTTTTTCAAGCCGCTGCCTCCT GGCTGGAAAGAAATCTTCCGGACTGA
Upstream 100 bases:
>100_bases TGGTGAATGATTACTTGCATACCACCACATTTGGACAGTTTTCAGGTTTTATCAAGCCAGAACGTCTTACAGGCTTGGAT ATTGACGTGATTTCTCCATC
Downstream 100 bases:
>100_bases ACTGCCGGAGCCGTGCTACCGGTTCAGTTCATCCCACTTCACCAGTTGGGAAAGAAGTTGGCTGATAAGGCGTTCCGTCT GTTCCCTGGCTTTCTCTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 221; Mature: 220
Protein sequence:
>221_residues MGAVMHFQRTLNRFSRENVPGYLAVFIGGFGDMFAGCLSRVEKGFPGFLPGVEYATAYYHWDGGGCGVFFDRCGKIAVEL EELRRRYPGLPVVLIGHSYGGSCAVEVARRQSVQAAPLCLLTVDAVARRQKSVRPACVEWWGNAYLQDGGGFMDAVPRIG GRWGHCAGADANLAFSGYSRDREGRLYSHRRPAPMLYEPPGEEACSLFQAAASWLERNLPD
Sequences:
>Translated_221_residues MGAVMHFQRTLNRFSRENVPGYLAVFIGGFGDMFAGCLSRVEKGFPGFLPGVEYATAYYHWDGGGCGVFFDRCGKIAVEL EELRRRYPGLPVVLIGHSYGGSCAVEVARRQSVQAAPLCLLTVDAVARRQKSVRPACVEWWGNAYLQDGGGFMDAVPRIG GRWGHCAGADANLAFSGYSRDREGRLYSHRRPAPMLYEPPGEEACSLFQAAASWLERNLPD >Mature_220_residues GAVMHFQRTLNRFSRENVPGYLAVFIGGFGDMFAGCLSRVEKGFPGFLPGVEYATAYYHWDGGGCGVFFDRCGKIAVELE ELRRRYPGLPVVLIGHSYGGSCAVEVARRQSVQAAPLCLLTVDAVARRQKSVRPACVEWWGNAYLQDGGGFMDAVPRIGG RWGHCAGADANLAFSGYSRDREGRLYSHRRPAPMLYEPPGEEACSLFQAAASWLERNLPD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24291; Mature: 24160
Theoretical pI: Translated: 7.99; Mature: 7.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAVMHFQRTLNRFSRENVPGYLAVFIGGFGDMFAGCLSRVEKGFPGFLPGVEYATAYYH CCHHHHHHHHHHHHHHCCCCEEEEHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE WDGGGCGVFFDRCGKIAVELEELRRRYPGLPVVLIGHSYGGSCAVEVARRQSVQAAPLCL ECCCCCHHHHHHHCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCHHH LTVDAVARRQKSVRPACVEWWGNAYLQDGGGFMDAVPRIGGRWGHCAGADANLAFSGYSR HHHHHHHHHHHCCCHHHHHHHCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCC DREGRLYSHRRPAPMLYEPPGEEACSLFQAAASWLERNLPD CCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure GAVMHFQRTLNRFSRENVPGYLAVFIGGFGDMFAGCLSRVEKGFPGFLPGVEYATAYYH CHHHHHHHHHHHHHHCCCCEEEEHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE WDGGGCGVFFDRCGKIAVELEELRRRYPGLPVVLIGHSYGGSCAVEVARRQSVQAAPLCL ECCCCCHHHHHHHCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCHHH LTVDAVARRQKSVRPACVEWWGNAYLQDGGGFMDAVPRIGGRWGHCAGADANLAFSGYSR HHHHHHHHHHHCCCHHHHHHHCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCC DREGRLYSHRRPAPMLYEPPGEEACSLFQAAASWLERNLPD CCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA