Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is ybeQ [H]
Identifier: 187735941
GI number: 187735941
Start: 1740871
End: 1742013
Strand: Reverse
Name: ybeQ [H]
Synonym: Amuc_1450
Alternate gene names: 187735941
Gene position: 1742013-1740871 (Counterclockwise)
Preceding gene: 187735942
Following gene: 187735937
Centisome position: 65.39
GC content: 58.18
Gene sequence:
>1143_bases ATGAATGACGCTTCCCACAACCACGGCGAGCAGGAAAACACCGTCTCCACCTATTCCGTCGACGTAGAAACCCTTCAGCA AATAGCTCTGAAAGGAGACGCCCAGGCGCTGTTCCAGCTGGCAATCAACTACGAACAGGGACGCGGGGTGGCGGAAAACC AGCAGGAAGCCTTCTACTGCTACCAGCAGGCGGCGGAACTGGGCCACGTTACAGCCCAGCTCAACCTGGGATGGGCTTAT TCCAACGGCATCGGCGCCCCTCAGGACAACGACAAGGCCTTTTACTGGTACCGGAAAGCCGCCGAACAGGGGCACCCCAC CGCGCAATTTGACCTTGGGTTCTGCTATGTCAATGGCCTGGGAGTGGAAAAAGACGAACACCAGGCCATCGGCTGGTACA AAAAAGCGGCGGAACAGGGCCACGCGGTAGCCCAGCTCAACCTCGGCTGGATTTATGCCAACAGCCCCAGCCGGAAAAAC TGGGAACAGGCCGTATACTGGTACAAGCAGGCTGCAGAACAGGGAGACCCCCGCGCCCAGTATAACCTGGCCTGGTGCTA TGGCAACGGAAGCGGAACCCCCAAAAACCCGCGGAAAGCCGCTTACTGGTACGAAGAAGCCGCCATGCAGAACCACGCTA CGGCCCAGTACAATCTGGGATGGTGCTATGAAAACGGTTTCGGCGTGGAGCCGGATCTGGACAAAGCGCTGGTATGGTAT CACAAATCAGCCCTTCAGGGCCAGATTACGGCCCAATACACGCTGGGATGGTGCTACGGCAACGGCCGGGGCATGGAAGT GGACATGGCCAAAGCCGTCCACTGGTACACCAAAGCCGCAGAACAGGGGCATACAACAGCCCAGCTCAACCTGGGGTGGT GCCATCTGAACGGAAAAGGAACGCCCGTCAACCGGGAAAAAGCCCTGAAATGGTACCTTAAGGCGGCGGAACAGGGCAAC GCCACAGCCATGTTCAATGTGGGCAACTGCTACGCCCACGGCTACGGCATTGAGCAGGACGATAAACAGGCGGAAGAATG GTATCAGAAAGCCGTCCGGCACGGCAACAAAAAGGCCGCCAGCGCCCTGCGCCATCTGGCCTCCAAACAGGAAAAAGAGA AACAAACGGACTCGGAGGCCTGA
Upstream 100 bases:
>100_bases GGGTCTTGATTCTTATGGGGGAAATGTGCAGAATCGGCGAGCGCACAAGTTCAGGAGAGCAAAAATTGTCCCAGTGTTCC CCAGTGCGGTTACCTGTGAA
Downstream 100 bases:
>100_bases ACAGGCATTCTCCTGCTTACTTCTATCCTCTAACCAGGTCCAGCCATGGACACACGAAGGGAAAACATGTTCCCATGGCC TGAAAAAATGTGCTTCCGCT
Product: Sel1 domain protein repeat-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 380; Mature: 380
Protein sequence:
>380_residues MNDASHNHGEQENTVSTYSVDVETLQQIALKGDAQALFQLAINYEQGRGVAENQQEAFYCYQQAAELGHVTAQLNLGWAY SNGIGAPQDNDKAFYWYRKAAEQGHPTAQFDLGFCYVNGLGVEKDEHQAIGWYKKAAEQGHAVAQLNLGWIYANSPSRKN WEQAVYWYKQAAEQGDPRAQYNLAWCYGNGSGTPKNPRKAAYWYEEAAMQNHATAQYNLGWCYENGFGVEPDLDKALVWY HKSALQGQITAQYTLGWCYGNGRGMEVDMAKAVHWYTKAAEQGHTTAQLNLGWCHLNGKGTPVNREKALKWYLKAAEQGN ATAMFNVGNCYAHGYGIEQDDKQAEEWYQKAVRHGNKKAASALRHLASKQEKEKQTDSEA
Sequences:
>Translated_380_residues MNDASHNHGEQENTVSTYSVDVETLQQIALKGDAQALFQLAINYEQGRGVAENQQEAFYCYQQAAELGHVTAQLNLGWAY SNGIGAPQDNDKAFYWYRKAAEQGHPTAQFDLGFCYVNGLGVEKDEHQAIGWYKKAAEQGHAVAQLNLGWIYANSPSRKN WEQAVYWYKQAAEQGDPRAQYNLAWCYGNGSGTPKNPRKAAYWYEEAAMQNHATAQYNLGWCYENGFGVEPDLDKALVWY HKSALQGQITAQYTLGWCYGNGRGMEVDMAKAVHWYTKAAEQGHTTAQLNLGWCHLNGKGTPVNREKALKWYLKAAEQGN ATAMFNVGNCYAHGYGIEQDDKQAEEWYQKAVRHGNKKAASALRHLASKQEKEKQTDSEA >Mature_380_residues MNDASHNHGEQENTVSTYSVDVETLQQIALKGDAQALFQLAINYEQGRGVAENQQEAFYCYQQAAELGHVTAQLNLGWAY SNGIGAPQDNDKAFYWYRKAAEQGHPTAQFDLGFCYVNGLGVEKDEHQAIGWYKKAAEQGHAVAQLNLGWIYANSPSRKN WEQAVYWYKQAAEQGDPRAQYNLAWCYGNGSGTPKNPRKAAYWYEEAAMQNHATAQYNLGWCYENGFGVEPDLDKALVWY HKSALQGQITAQYTLGWCYGNGRGMEVDMAKAVHWYTKAAEQGHTTAQLNLGWCHLNGKGTPVNREKALKWYLKAAEQGN ATAMFNVGNCYAHGYGIEQDDKQAEEWYQKAVRHGNKKAASALRHLASKQEKEKQTDSEA
Specific function: Unknown
COG id: COG0790
COG function: function code R; FOG: TPR repeat, SEL1 subfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli ybeT [H]
Homologues:
Organism=Homo sapiens, GI19923669, Length=339, Percent_Identity=33.0383480825959, Blast_Score=146, Evalue=3e-35, Organism=Homo sapiens, GI151301150, Length=333, Percent_Identity=30.3303303303303, Blast_Score=118, Evalue=7e-27, Organism=Homo sapiens, GI217330658, Length=226, Percent_Identity=30.9734513274336, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI217330656, Length=226, Percent_Identity=30.9734513274336, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI154689719, Length=323, Percent_Identity=27.8637770897833, Blast_Score=69, Evalue=1e-11, Organism=Escherichia coli, GI87081769, Length=302, Percent_Identity=41.7218543046358, Blast_Score=210, Evalue=1e-55, Organism=Escherichia coli, GI1786867, Length=150, Percent_Identity=38, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1790515, Length=199, Percent_Identity=32.6633165829146, Blast_Score=67, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17563256, Length=324, Percent_Identity=28.7037037037037, Blast_Score=113, Evalue=1e-25, Organism=Saccharomyces cerevisiae, GI6319410, Length=275, Percent_Identity=30.1818181818182, Blast_Score=93, Evalue=8e-20, Organism=Saccharomyces cerevisiae, GI6319998, Length=388, Percent_Identity=25.7731958762887, Blast_Score=83, Evalue=8e-17, Organism=Drosophila melanogaster, GI21355295, Length=353, Percent_Identity=30.5949008498584, Blast_Score=125, Evalue=4e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006597 - InterPro: IPR011990 [H]
Pfam domain/function: PF08238 Sel1 [H]
EC number: NA
Molecular weight: Translated: 42650; Mature: 42650
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDASHNHGEQENTVSTYSVDVETLQQIALKGDAQALFQLAINYEQGRGVAENQQEAFYC CCCCCCCCCCCCCCEEEEEECHHHHHHHHHCCCHHHHHHHHEEHHHCCCCCCCCHHHHHH YQQAAELGHVTAQLNLGWAYSNGIGAPQDNDKAFYWYRKAAEQGHPTAQFDLGFCYVNGL HHHHHHHCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHHCCCCCEEEEEEEEEEECC GVEKDEHQAIGWYKKAAEQGHAVAQLNLGWIYANSPSRKNWEQAVYWYKQAAEQGDPRAQ CCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE YNLAWCYGNGSGTPKNPRKAAYWYEEAAMQNHATAQYNLGWCYENGFGVEPDLDKALVWY EEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCHHHHHH HKSALQGQITAQYTLGWCYGNGRGMEVDMAKAVHWYTKAAEQGHTTAQLNLGWCHLNGKG HHHHHCCEEEEEEEEEEEEECCCCCEEHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCC TPVNREKALKWYLKAAEQGNATAMFNVGNCYAHGYGIEQDDKQAEEWYQKAVRHGNKKAA CCCCHHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCHHHHHHHHHHHHHCCCHHHH SALRHLASKQEKEKQTDSEA HHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MNDASHNHGEQENTVSTYSVDVETLQQIALKGDAQALFQLAINYEQGRGVAENQQEAFYC CCCCCCCCCCCCCCEEEEEECHHHHHHHHHCCCHHHHHHHHEEHHHCCCCCCCCHHHHHH YQQAAELGHVTAQLNLGWAYSNGIGAPQDNDKAFYWYRKAAEQGHPTAQFDLGFCYVNGL HHHHHHHCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHHCCCCCEEEEEEEEEEECC GVEKDEHQAIGWYKKAAEQGHAVAQLNLGWIYANSPSRKNWEQAVYWYKQAAEQGDPRAQ CCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE YNLAWCYGNGSGTPKNPRKAAYWYEEAAMQNHATAQYNLGWCYENGFGVEPDLDKALVWY EEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCHHHHHH HKSALQGQITAQYTLGWCYGNGRGMEVDMAKAVHWYTKAAEQGHTTAQLNLGWCHLNGKG HHHHHCCEEEEEEEEEEEEECCCCCEEHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCC TPVNREKALKWYLKAAEQGNATAMFNVGNCYAHGYGIEQDDKQAEEWYQKAVRHGNKKAA CCCCHHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCHHHHHHHHHHHHHCCCHHHH SALRHLASKQEKEKQTDSEA HHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]