Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187735929
Identifier: 187735929
GI number: 187735929
Start: 1725597
End: 1727516
Strand: Direct
Name: 187735929
Synonym: Amuc_1438
Alternate gene names: NA
Gene position: 1725597-1727516 (Clockwise)
Preceding gene: 187735928
Following gene: 187735930
Centisome position: 64.77
GC content: 58.33
Gene sequence:
>1920_bases ATGAATGTTATGTCGAAACGTTTTTTTGCCTTGTTGCTGGTCCTGGGGTCCGGGATATGGAGTGTTCCTGCCATGGGGAT GGATGAGGAGTCAGCTTCCAGGGCATCTGTTCCTGCCTCCTCGGACAGGGAGGGAGCGGAGTTTACCCGTCTGCCCGTCA GCTGGACGGTTAATCCCAGGGATGCCGCCAATGCCCGTGCCGCCTGGAAAACGCTGAGCGCCTATCATCGGGGCAAACCG AAGTCTTCCAGAAAATTGCATGTGGTTTACGTAACGTTCAAGGACAGGCCTGCCCTTGAAGGATACCGGGAACGGTATGA TCATATTCTGAAGAATATTCAGGCATATTATGCGGACCAGATGCAGGCCAACGGTTTCCCTCCGCTCACATTCCAGCTGG ATTTGGATGAACGGGGCAAGCTGGTTATTCATGATGCCTATGTGGATAAACCCATGAGCGAGATGAGCGTGCAGAGCTCC GGCCCCGTCTCCCGGGAAGCCGCCAGGAAGGTGCTGGCTTCCAAGGGGATTGATATTGAGAAGGAACATGTGCTGGTCGT TTGCCAGCTTCCGGACGGCGTGGGTCCTTATTACGGCGGCGGCTTCAGCCACCAGGGCACGGGGTGGACCTGTGACCAGG AAGGGCTGGATCCCGCCAGCTTTCTGGATACGGAAATGATGCAGGGCGGCCGTTTCAAGGTGACCAGGGGAAAGAACGCC ACCATTTACATAGGCGGTACGGCCCATGAATTGGGGCATTCCTTCGGCCTTCCCCACACGGGCGACGGATGGAATTACCC CGACGCCGGAGCTTCCCTGATGGGCCATGGCAATTCCACCTACGGCGACGAGCTGCGCCATGAAGGGAAGGGTGCCTATT TGGCGCCGACGGATGCTTTGAAACTGGCCAGTGTTCCCCTGTTCAACGGGGTGGAGACGGAACTTCCCGCAGACGCCTCC TTCGGGCGTATGCTCGGCAAGTATGTCCCGGGGTCTTTTGAACGGCTGGAGGCCATTCCCGTTAAAGACGGATTGCGGCT GAAAGGGAGGGTTCATCTGACGCGCCCCGCGTATGGCATTGTTGCCCATTTGGATCCGCCCGGAGGTTCGGATTATGATT CCAATGCCGTGGGCGCTTCTCTGGATGAAAAGGGAGAGTTTGATCTCACCATCTGCAGGCCGGGATATAAGGGTGGTTTT ATAGAAATGCGGGTGGCCGTATTGAATTGCGACAGCACGCGCAGCATGATTACTCTGCCCGTGTGGATGGATGCCCGGGG AACCAAGGCCCCTTCTCTGGCCCAGATCGTTTATTTCGGGGATGTTCAGAATCTGTGGATACGGGGCCGCACGGAAGAAG CCCGGAAGGCGCTGGCGGAAGTGGAACGCAGGCATGGTTCCCGTTCTGAAGTGAAAGAATGGCTCCCTGTCTGGAAGCGC GCTCTGGGGCGCCAGGAGCCCGCGCTGGAAGTTGTTCCGGCGCAGATTCCTGCGGCAACCGCCAGTATCAGCCTGAATGA CTGCAAGCCTTCCGTAGCCCAGGTGGGGTGGGCCGTTCCGTTGTGGGATGTCCTGTTCCCGTCGGATTTGGGGCCCGTGC CTTTCTTCCGGACAATCGGAAGGCCGGAACGTTTCATTCTGGCTCATGCCCCGGCTGTTTTTGCCTATGACCTGGATGGG CGCTGGAAAGAGTTCCGCGCTGATGTGGGGCTGCCCTTCGGCTCCCGCGGCAGCGTCAAATTCAGCGTGTATTTGGACGG CAGGAAGCTTATGGAATCCCCTGTGCTCAAGGACGGGGACTCCATTCCCGTGAAGACGGCGGTAGAGGGCGGCAGGAAGC TGGAAATCCGCGTGGATGACGCCGGAGACGGCAATGCCGCCGATTGGGGCATTATAGCCAACGGCATGCTGACCCGGTAA
Upstream 100 bases:
>100_bases GGAAGTGGTGTATGATTCCTTTTCCGAAAATATGAATCGTCTGGTGAATGATATGGTGATAAAACACCTTCGGTTTACCC GTATATCCTGATATTAGTTC
Downstream 100 bases:
>100_bases ATTTTCTGCCCCCACTGGCGGAGAAATGTGACATTAGGCTTGTCTTTTGCCCTTTCTCATAGTGTTCTGTGGGCTAGCCA TGATTGGGACGATTGCAAAG
Product: Glycosyl hydrolase family 98 carbohydrate binding module
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 639; Mature: 639
Protein sequence:
>639_residues MNVMSKRFFALLLVLGSGIWSVPAMGMDEESASRASVPASSDREGAEFTRLPVSWTVNPRDAANARAAWKTLSAYHRGKP KSSRKLHVVYVTFKDRPALEGYRERYDHILKNIQAYYADQMQANGFPPLTFQLDLDERGKLVIHDAYVDKPMSEMSVQSS GPVSREAARKVLASKGIDIEKEHVLVVCQLPDGVGPYYGGGFSHQGTGWTCDQEGLDPASFLDTEMMQGGRFKVTRGKNA TIYIGGTAHELGHSFGLPHTGDGWNYPDAGASLMGHGNSTYGDELRHEGKGAYLAPTDALKLASVPLFNGVETELPADAS FGRMLGKYVPGSFERLEAIPVKDGLRLKGRVHLTRPAYGIVAHLDPPGGSDYDSNAVGASLDEKGEFDLTICRPGYKGGF IEMRVAVLNCDSTRSMITLPVWMDARGTKAPSLAQIVYFGDVQNLWIRGRTEEARKALAEVERRHGSRSEVKEWLPVWKR ALGRQEPALEVVPAQIPAATASISLNDCKPSVAQVGWAVPLWDVLFPSDLGPVPFFRTIGRPERFILAHAPAVFAYDLDG RWKEFRADVGLPFGSRGSVKFSVYLDGRKLMESPVLKDGDSIPVKTAVEGGRKLEIRVDDAGDGNAADWGIIANGMLTR
Sequences:
>Translated_639_residues MNVMSKRFFALLLVLGSGIWSVPAMGMDEESASRASVPASSDREGAEFTRLPVSWTVNPRDAANARAAWKTLSAYHRGKP KSSRKLHVVYVTFKDRPALEGYRERYDHILKNIQAYYADQMQANGFPPLTFQLDLDERGKLVIHDAYVDKPMSEMSVQSS GPVSREAARKVLASKGIDIEKEHVLVVCQLPDGVGPYYGGGFSHQGTGWTCDQEGLDPASFLDTEMMQGGRFKVTRGKNA TIYIGGTAHELGHSFGLPHTGDGWNYPDAGASLMGHGNSTYGDELRHEGKGAYLAPTDALKLASVPLFNGVETELPADAS FGRMLGKYVPGSFERLEAIPVKDGLRLKGRVHLTRPAYGIVAHLDPPGGSDYDSNAVGASLDEKGEFDLTICRPGYKGGF IEMRVAVLNCDSTRSMITLPVWMDARGTKAPSLAQIVYFGDVQNLWIRGRTEEARKALAEVERRHGSRSEVKEWLPVWKR ALGRQEPALEVVPAQIPAATASISLNDCKPSVAQVGWAVPLWDVLFPSDLGPVPFFRTIGRPERFILAHAPAVFAYDLDG RWKEFRADVGLPFGSRGSVKFSVYLDGRKLMESPVLKDGDSIPVKTAVEGGRKLEIRVDDAGDGNAADWGIIANGMLTR >Mature_639_residues MNVMSKRFFALLLVLGSGIWSVPAMGMDEESASRASVPASSDREGAEFTRLPVSWTVNPRDAANARAAWKTLSAYHRGKP KSSRKLHVVYVTFKDRPALEGYRERYDHILKNIQAYYADQMQANGFPPLTFQLDLDERGKLVIHDAYVDKPMSEMSVQSS GPVSREAARKVLASKGIDIEKEHVLVVCQLPDGVGPYYGGGFSHQGTGWTCDQEGLDPASFLDTEMMQGGRFKVTRGKNA TIYIGGTAHELGHSFGLPHTGDGWNYPDAGASLMGHGNSTYGDELRHEGKGAYLAPTDALKLASVPLFNGVETELPADAS FGRMLGKYVPGSFERLEAIPVKDGLRLKGRVHLTRPAYGIVAHLDPPGGSDYDSNAVGASLDEKGEFDLTICRPGYKGGF IEMRVAVLNCDSTRSMITLPVWMDARGTKAPSLAQIVYFGDVQNLWIRGRTEEARKALAEVERRHGSRSEVKEWLPVWKR ALGRQEPALEVVPAQIPAATASISLNDCKPSVAQVGWAVPLWDVLFPSDLGPVPFFRTIGRPERFILAHAPAVFAYDLDG RWKEFRADVGLPFGSRGSVKFSVYLDGRKLMESPVLKDGDSIPVKTAVEGGRKLEIRVDDAGDGNAADWGIIANGMLTR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69867; Mature: 69867
Theoretical pI: Translated: 7.24; Mature: 7.24
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVMSKRFFALLLVLGSGIWSVPAMGMDEESASRASVPASSDREGAEFTRLPVSWTVNPR CCCHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCC DAANARAAWKTLSAYHRGKPKSSRKLHVVYVTFKDRPALEGYRERYDHILKNIQAYYADQ CCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH MQANGFPPLTFQLDLDERGKLVIHDAYVDKPMSEMSVQSSGPVSREAARKVLASKGIDIE HCCCCCCCEEEEECCCCCCCEEEEEHHHCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCC KEHVLVVCQLPDGVGPYYGGGFSHQGTGWTCDQEGLDPASFLDTEMMQGGRFKVTRGKNA CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCE TIYIGGTAHELGHSFGLPHTGDGWNYPDAGASLMGHGNSTYGDELRHEGKGAYLAPTDAL EEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHCCCCCEECCCCCH KLASVPLFNGVETELPADASFGRMLGKYVPGSFERLEAIPVKDGLRLKGRVHLTRPAYGI HHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHEEEECCCCCCEEEEEEEEECCCEEE VAHLDPPGGSDYDSNAVGASLDEKGEFDLTICRPGYKGGFIEMRVAVLNCDSTRSMITLP EEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEECCCCCCEEEEE VWMDARGTKAPSLAQIVYFGDVQNLWIRGRTEEARKALAEVERRHGSRSEVKEWLPVWKR EEECCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH ALGRQEPALEVVPAQIPAATASISLNDCKPSVAQVGWAVPLWDVLFPSDLGPVPFFRTIG HHCCCCCCEEEECCCCCCCEEEEEECCCCCHHHHHCCCCCHHHHHCCCCCCCCCHHHHCC RPERFILAHAPAVFAYDLDGRWKEFRADVGLPFGSRGSVKFSVYLDGRKLMESPVLKDGD CCCEEEEEECCEEEEEECCCCHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHCCCCCCCC SIPVKTAVEGGRKLEIRVDDAGDGNAADWGIIANGMLTR CCCCHHHHCCCCEEEEEEECCCCCCCCCCCEEECCCCCC >Mature Secondary Structure MNVMSKRFFALLLVLGSGIWSVPAMGMDEESASRASVPASSDREGAEFTRLPVSWTVNPR CCCHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCC DAANARAAWKTLSAYHRGKPKSSRKLHVVYVTFKDRPALEGYRERYDHILKNIQAYYADQ CCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH MQANGFPPLTFQLDLDERGKLVIHDAYVDKPMSEMSVQSSGPVSREAARKVLASKGIDIE HCCCCCCCEEEEECCCCCCCEEEEEHHHCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCC KEHVLVVCQLPDGVGPYYGGGFSHQGTGWTCDQEGLDPASFLDTEMMQGGRFKVTRGKNA CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCE TIYIGGTAHELGHSFGLPHTGDGWNYPDAGASLMGHGNSTYGDELRHEGKGAYLAPTDAL EEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHCCCCCEECCCCCH KLASVPLFNGVETELPADASFGRMLGKYVPGSFERLEAIPVKDGLRLKGRVHLTRPAYGI HHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHEEEECCCCCCEEEEEEEEECCCEEE VAHLDPPGGSDYDSNAVGASLDEKGEFDLTICRPGYKGGFIEMRVAVLNCDSTRSMITLP EEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEECCCCCCEEEEE VWMDARGTKAPSLAQIVYFGDVQNLWIRGRTEEARKALAEVERRHGSRSEVKEWLPVWKR EEECCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH ALGRQEPALEVVPAQIPAATASISLNDCKPSVAQVGWAVPLWDVLFPSDLGPVPFFRTIG HHCCCCCCEEEECCCCCCCEEEEEECCCCCHHHHHCCCCCHHHHHCCCCCCCCCHHHHCC RPERFILAHAPAVFAYDLDGRWKEFRADVGLPFGSRGSVKFSVYLDGRKLMESPVLKDGD CCCEEEEEECCEEEEEECCCCHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHCCCCCCCC SIPVKTAVEGGRKLEIRVDDAGDGNAADWGIIANGMLTR CCCCHHHHCCCCEEEEEEECCCCCCCCCCCEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA