Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is hypC [H]
Identifier: 187735893
GI number: 187735893
Start: 1674125
End: 1674367
Strand: Direct
Name: hypC [H]
Synonym: Amuc_1400
Alternate gene names: 187735893
Gene position: 1674125-1674367 (Clockwise)
Preceding gene: 187735892
Following gene: 187735894
Centisome position: 62.84
GC content: 56.79
Gene sequence:
>243_bases ATGTGTTTGGCCGTTCCCGGAAAGATTGTGAGCGTCAATGAGACGGACCCTTTGTTCAGATTGGGGGTGGTGGATTTTGG CGGCGTGACCCGTGAAGTGAACCTGGCCTGTGTGCCGGAAGCCGTGCCGGGGGATTACGTCATCGTTCACGTGGGCATGG CCCTGAGCGTGCTGGACGAGGAGACCGCTCTTCAAACCCGCAGGGAAATGAGAGAAATTGTGGAAAATACGGATCCGCTG TAG
Upstream 100 bases:
>100_bases AAGGTGCCAGTTGTCTCTGCCCCAGCGGGTGCCGTGCAATGACGGGGGAATTTCCCTGGGGCAGGTTGCGGCGGTCGTAC GCCAATGGAAAGGATAGAAT
Downstream 100 bases:
>100_bases GGAGGGGCGTTTTCCGAATTCAATTAATGATTTATGCAGGAGGAAGTTCGGCAGCTGATTGAAGAATTGCGCCACGCTGT GACGCGTCCGTGGGCGGTAA
Product: hydrogenase assembly chaperone hypC/hupF
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 80; Mature: 80
Protein sequence:
>80_residues MCLAVPGKIVSVNETDPLFRLGVVDFGGVTREVNLACVPEAVPGDYVIVHVGMALSVLDEETALQTRREMREIVENTDPL
Sequences:
>Translated_80_residues MCLAVPGKIVSVNETDPLFRLGVVDFGGVTREVNLACVPEAVPGDYVIVHVGMALSVLDEETALQTRREMREIVENTDPL >Mature_80_residues MCLAVPGKIVSVNETDPLFRLGVVDFGGVTREVNLACVPEAVPGDYVIVHVGMALSVLDEETALQTRREMREIVENTDPL
Specific function: May Have A Specific Role In The Maturation Of The Large Subunits Of Hyd1 And Hyd2. [C]
COG id: COG0298
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hupF/hypC family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019812 - InterPro: IPR001109 [H]
Pfam domain/function: PF01455 HupF_HypC [H]
EC number: NA
Molecular weight: Translated: 8696; Mature: 8696
Theoretical pI: Translated: 4.12; Mature: 4.12
Prosite motif: PS01097 HUPF_HYPC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCLAVPGKIVSVNETDPLFRLGVVDFGGVTREVNLACVPEAVPGDYVIVHVGMALSVLDE CEEECCCEEEEECCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHCH ETALQTRREMREIVENTDPL HHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MCLAVPGKIVSVNETDPLFRLGVVDFGGVTREVNLACVPEAVPGDYVIVHVGMALSVLDE CEEECCCEEEEECCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHCH ETALQTRREMREIVENTDPL HHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]