Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is hypF [H]
Identifier: 187735892
GI number: 187735892
Start: 1671794
End: 1674121
Strand: Direct
Name: hypF [H]
Synonym: Amuc_1399
Alternate gene names: 187735892
Gene position: 1671794-1674121 (Clockwise)
Preceding gene: 187735891
Following gene: 187735893
Centisome position: 62.75
GC content: 61.47
Gene sequence:
>2328_bases ATGGCCATCACCACCATTGAACAGGCCGCCGCGGCATTGAAATTTGAGATAGCCGGCATGGTTCAGGGGGTCGGCTTCCG TCCCCATGTGTACCGTTTGGCGGTACGGCACGGATTGAAAGGGTTTGTGCGCAATACGGAGTCCGGCGTGGAGATTCATG TGGAAGGGGAGCCCGGCGCTCCGGAGCGTTTCTGGACCGCGCTGATGGACGGCCTGCCGGAGCATGCCCGGGTTTATGGA GTGGAGCGGACCGTATGCGAGCCTGCCGGTTTTGAGGAATTCCGCATTGAGGAAAGCGATTCCACCCCCGGAGGCGTTCC GGTGATGCTGCCGGATCTGGCTCCGTGCCCAGAGTGCCTGGAAGAAATGCACGACCCGTCTTCCCGCCGGTATCATTATC CGTTTACCAACTGCACGCACTGCGGTCCCCGCTATTCCATTATTGAGACAATGCCGTATGACCGAGCGAGAACCAGCATG AAGGGGTTCCGAATGTGTCCGGAGTGCCGGAGGGAGTACCAGGATGTGGAGGACAGGCGTTTTCACGCACAGCCTATCGG CTGCCCGTCCTGCGGTCCTTCCGTGAAGGTGCTGTTTTCAGATGGTTCAGAACTGGGGTTCGGCCATGGGTTTGATACCC CCGCGGCACAGGTGGCATGGGTGCTGGCGGACGGTTTGATTGTGGCCCTGCTGGGCGTAGGAGGTTTTCAATTGCTGGCA GATGCTTCTTCGGAAGCTGCCGTCAGGCGTCTCCGGCGGTTGAAGGAGCGTGACGCCAAGCCTTTTGCCGTGATGGTGCC GGATGTGGCTGCGGCGGAGAGGCTGTGCCGCCTGTCGGAGGAGGAAAGGCGCCTGCTGACTTCTCCGGCCGCCCCCATTG TACTGGCCCGGGGGGGGAAGGATGTGGATCTGGCTCCTTCCGTGTGCATGTTCAGCCGTTTTGTGGGGATAATGCTTCCG TCTTCCCCTCTTCATGCGCTGCTGATGGATGTGTGGGGAAAGCCTCTGGTGGTGACCAGCGGGAACCTGAGCGGCGAGCC CCTGTGCGTCTCCGTGGAGGAGGGGCTGGAGAAACTGGGCCATGTGGCGGATGTGTTTTTGGTGCATGACCGTCCGGTAG TGCGGCCCGTGGACGATTCCGTGGTCCGCGTTACGGACGGCAGGGCCATGATGGTTCGCCGCGCCCGCGGATATGCCCCG CGGCCTGTGTGGCGCACATCTGCGGCGGCTCCCGACATGCTCGCCTTGGGGGCCGGACTGAAGAATACCATCTGCTGGCT GAAAAGGGGCGTGGCTGTCATGAGCCAGCATCTCGGTGACCTGAGCAGTGCGGCTTCTCTGAACGCTTTTGAGCGGACGG TGGAGGCGCTGGGCAGAACCCTGGATGCCGTTCCGCAGGTAATTGCCGTGGACGCCCATCCGGACGGCCCCACTTTTGCC CTTGGCCGGCGTCTGGCGCGGAAGTGGAATGCAACGGTTGTCCCTGTGCAGCATCATCAGGCTCATGTGCTGGCCTGCGC CGTGGAAAATGAAACGCCGTTTCCCGCTTTGGGCATAGCTTGGGACGGGACGGGGTTCGGTACGGACGGAACGGTATGGG GAGGGGAATTTTTTGTGTTGGAGGAAGAGGGTGAGCCGCGCAGGGTGGCCCGCCTCAGGCCGTTTCTTCTTCCTGGTGGG GACGAAGCGGTTCGGGAACCTTCCCGGTGCGCCTGTTCCCTGGCCCGTCAGATGGGGCCGTGGCGTACGTACGGGCTTGA TAAGCGTCTGGAGAGGGGGATGCCTGTGCGGAAACGCGAGGTTCTGGAGGCGATGATGGCCCGGAATATCCATTGTCCGT CCTCCTCGTCCATGGGGCGGTTGTTTGATGCCGTGGCTTTCTGGTGCGGTTTTGACGGTGCGGCGGGGTGTGAGGGCCAT GCCGCCATGATGCTGGAATCATGGGCCGCGGAAGCTTCCGGGGAAAAAATGCCGGGGGACGCGTATGAATGGGTCATGCA TGAAGAAGGGGGATTGCTGGAACTGGATTGGCGGCCGCTGATGAAGTCTGTGGATGAAGATTTGTTGGAAGGCGTTTCCC GCGGCTGCATCGCCCGCAAGTTTCATGAGAGCCTGGTGAATCTGGTTTTTGACGTGGCGGAGCGTTTCTGCCTGGATAGG CTGGTGCTGGGCGGCGGATGTTTTCAGAATGCCTTTTTGCTTGAAGGACTGGCGGGGATGGCCCAGTCTAGAAGGTGCCA GTTGTCTCTGCCCCAGCGGGTGCCGTGCAATGACGGGGGAATTTCCCTGGGGCAGGTTGCGGCGGTCGTACGCCAATGGA AAGGATAG
Upstream 100 bases:
>100_bases GTGATTGAGGTTTCTTCCAAGACCGGCGAAGGAATGGAGGCCTGGTGCGAGGAGATTGTGGAACGTGCGCGCCGCGCCCG GGAAGGCACGATTCAGCATC
Downstream 100 bases:
>100_bases AATATGTGTTTGGCCGTTCCCGGAAAGATTGTGAGCGTCAATGAGACGGACCCTTTGTTCAGATTGGGGGTGGTGGATTT TGGCGGCGTGACCCGTGAAG
Product: (NiFe) hydrogenase maturation protein HypF
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF; [NiFe]-hydrogenase maturation factor hypF; Hydrogenase maturation protein hypF [H]
Number of amino acids: Translated: 775; Mature: 774
Protein sequence:
>775_residues MAITTIEQAAAALKFEIAGMVQGVGFRPHVYRLAVRHGLKGFVRNTESGVEIHVEGEPGAPERFWTALMDGLPEHARVYG VERTVCEPAGFEEFRIEESDSTPGGVPVMLPDLAPCPECLEEMHDPSSRRYHYPFTNCTHCGPRYSIIETMPYDRARTSM KGFRMCPECRREYQDVEDRRFHAQPIGCPSCGPSVKVLFSDGSELGFGHGFDTPAAQVAWVLADGLIVALLGVGGFQLLA DASSEAAVRRLRRLKERDAKPFAVMVPDVAAAERLCRLSEEERRLLTSPAAPIVLARGGKDVDLAPSVCMFSRFVGIMLP SSPLHALLMDVWGKPLVVTSGNLSGEPLCVSVEEGLEKLGHVADVFLVHDRPVVRPVDDSVVRVTDGRAMMVRRARGYAP RPVWRTSAAAPDMLALGAGLKNTICWLKRGVAVMSQHLGDLSSAASLNAFERTVEALGRTLDAVPQVIAVDAHPDGPTFA LGRRLARKWNATVVPVQHHQAHVLACAVENETPFPALGIAWDGTGFGTDGTVWGGEFFVLEEEGEPRRVARLRPFLLPGG DEAVREPSRCACSLARQMGPWRTYGLDKRLERGMPVRKREVLEAMMARNIHCPSSSSMGRLFDAVAFWCGFDGAAGCEGH AAMMLESWAAEASGEKMPGDAYEWVMHEEGGLLELDWRPLMKSVDEDLLEGVSRGCIARKFHESLVNLVFDVAERFCLDR LVLGGGCFQNAFLLEGLAGMAQSRRCQLSLPQRVPCNDGGISLGQVAAVVRQWKG
Sequences:
>Translated_775_residues MAITTIEQAAAALKFEIAGMVQGVGFRPHVYRLAVRHGLKGFVRNTESGVEIHVEGEPGAPERFWTALMDGLPEHARVYG VERTVCEPAGFEEFRIEESDSTPGGVPVMLPDLAPCPECLEEMHDPSSRRYHYPFTNCTHCGPRYSIIETMPYDRARTSM KGFRMCPECRREYQDVEDRRFHAQPIGCPSCGPSVKVLFSDGSELGFGHGFDTPAAQVAWVLADGLIVALLGVGGFQLLA DASSEAAVRRLRRLKERDAKPFAVMVPDVAAAERLCRLSEEERRLLTSPAAPIVLARGGKDVDLAPSVCMFSRFVGIMLP SSPLHALLMDVWGKPLVVTSGNLSGEPLCVSVEEGLEKLGHVADVFLVHDRPVVRPVDDSVVRVTDGRAMMVRRARGYAP RPVWRTSAAAPDMLALGAGLKNTICWLKRGVAVMSQHLGDLSSAASLNAFERTVEALGRTLDAVPQVIAVDAHPDGPTFA LGRRLARKWNATVVPVQHHQAHVLACAVENETPFPALGIAWDGTGFGTDGTVWGGEFFVLEEEGEPRRVARLRPFLLPGG DEAVREPSRCACSLARQMGPWRTYGLDKRLERGMPVRKREVLEAMMARNIHCPSSSSMGRLFDAVAFWCGFDGAAGCEGH AAMMLESWAAEASGEKMPGDAYEWVMHEEGGLLELDWRPLMKSVDEDLLEGVSRGCIARKFHESLVNLVFDVAERFCLDR LVLGGGCFQNAFLLEGLAGMAQSRRCQLSLPQRVPCNDGGISLGQVAAVVRQWKG >Mature_774_residues AITTIEQAAAALKFEIAGMVQGVGFRPHVYRLAVRHGLKGFVRNTESGVEIHVEGEPGAPERFWTALMDGLPEHARVYGV ERTVCEPAGFEEFRIEESDSTPGGVPVMLPDLAPCPECLEEMHDPSSRRYHYPFTNCTHCGPRYSIIETMPYDRARTSMK GFRMCPECRREYQDVEDRRFHAQPIGCPSCGPSVKVLFSDGSELGFGHGFDTPAAQVAWVLADGLIVALLGVGGFQLLAD ASSEAAVRRLRRLKERDAKPFAVMVPDVAAAERLCRLSEEERRLLTSPAAPIVLARGGKDVDLAPSVCMFSRFVGIMLPS SPLHALLMDVWGKPLVVTSGNLSGEPLCVSVEEGLEKLGHVADVFLVHDRPVVRPVDDSVVRVTDGRAMMVRRARGYAPR PVWRTSAAAPDMLALGAGLKNTICWLKRGVAVMSQHLGDLSSAASLNAFERTVEALGRTLDAVPQVIAVDAHPDGPTFAL GRRLARKWNATVVPVQHHQAHVLACAVENETPFPALGIAWDGTGFGTDGTVWGGEFFVLEEEGEPRRVARLRPFLLPGGD EAVREPSRCACSLARQMGPWRTYGLDKRLERGMPVRKREVLEAMMARNIHCPSSSSMGRLFDAVAFWCGFDGAAGCEGHA AMMLESWAAEASGEKMPGDAYEWVMHEEGGLLELDWRPLMKSVDEDLLEGVSRGCIARKFHESLVNLVFDVAERFCLDRL VLGGGCFQNAFLLEGLAGMAQSRRCQLSLPQRVPCNDGGISLGQVAAVVRQWKG
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=781, Percent_Identity=37.0038412291933, Blast_Score=379, Evalue=1e-106,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 84688; Mature: 84557
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAITTIEQAAAALKFEIAGMVQGVGFRPHVYRLAVRHGLKGFVRNTESGVEIHVEGEPGA CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC PERFWTALMDGLPEHARVYGVERTVCEPAGFEEFRIEESDSTPGGVPVMLPDLAPCPECL HHHHHHHHHHCCCHHHHEECCHHHHCCCCCCCCEEEECCCCCCCCCEEECCCCCCCHHHH EEMHDPSSRRYHYPFTNCTHCGPRYSIIETMPYDRARTSMKGFRMCPECRREYQDVEDRR HHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCHHHHHHHCCHHHHH FHAQPIGCPSCGPSVKVLFSDGSELGFGHGFDTPAAQVAWVLADGLIVALLGVGGFQLLA EECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH DASSEAAVRRLRRLKERDAKPFAVMVPDVAAAERLCRLSEEERRLLTSPAAPIVLARGGK CCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCHHHHHHHCCCCCCEEEECCCC DVDLAPSVCMFSRFVGIMLPSSPLHALLMDVWGKPLVVTSGNLSGEPLCVSVEEGLEKLG CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEHHHHHHHHH HVADVFLVHDRPVVRPVDDSVVRVTDGRAMMVRRARGYAPRPVWRTSAAAPDMLALGAGL HHHEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCH KNTICWLKRGVAVMSQHLGDLSSAASLNAFERTVEALGRTLDAVPQVIAVDAHPDGPTFA HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHH LGRRLARKWNATVVPVQHHQAHVLACAVENETPFPALGIAWDGTGFGTDGTVWGGEFFVL HHHHHHHHCCCEEEEECCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCEEECCEEEEE EEEGEPRRVARLRPFLLPGGDEAVREPSRCACSLARQMGPWRTYGLDKRLERGMPVRKRE CCCCCCHHHHHCCCEECCCCCHHHCCHHHHHHHHHHHCCCCHHCCCHHHHHCCCCHHHHH VLEAMMARNIHCPSSSSMGRLFDAVAFWCGFDGAAGCEGHAAMMLESWAAEASGEKMPGD HHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC AYEWVMHEEGGLLELDWRPLMKSVDEDLLEGVSRGCIARKFHESLVNLVFDVAERFCLDR HHHHEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVLGGGCFQNAFLLEGLAGMAQSRRCQLSLPQRVPCNDGGISLGQVAAVVRQWKG HHHCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure AITTIEQAAAALKFEIAGMVQGVGFRPHVYRLAVRHGLKGFVRNTESGVEIHVEGEPGA CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC PERFWTALMDGLPEHARVYGVERTVCEPAGFEEFRIEESDSTPGGVPVMLPDLAPCPECL HHHHHHHHHHCCCHHHHEECCHHHHCCCCCCCCEEEECCCCCCCCCEEECCCCCCCHHHH EEMHDPSSRRYHYPFTNCTHCGPRYSIIETMPYDRARTSMKGFRMCPECRREYQDVEDRR HHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCHHHHHHHCCHHHHH FHAQPIGCPSCGPSVKVLFSDGSELGFGHGFDTPAAQVAWVLADGLIVALLGVGGFQLLA EECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH DASSEAAVRRLRRLKERDAKPFAVMVPDVAAAERLCRLSEEERRLLTSPAAPIVLARGGK CCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCHHHHHHHCCCCCCEEEECCCC DVDLAPSVCMFSRFVGIMLPSSPLHALLMDVWGKPLVVTSGNLSGEPLCVSVEEGLEKLG CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEHHHHHHHHH HVADVFLVHDRPVVRPVDDSVVRVTDGRAMMVRRARGYAPRPVWRTSAAAPDMLALGAGL HHHEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCH KNTICWLKRGVAVMSQHLGDLSSAASLNAFERTVEALGRTLDAVPQVIAVDAHPDGPTFA HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHH LGRRLARKWNATVVPVQHHQAHVLACAVENETPFPALGIAWDGTGFGTDGTVWGGEFFVL HHHHHHHHCCCEEEEECCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCEEECCEEEEE EEEGEPRRVARLRPFLLPGGDEAVREPSRCACSLARQMGPWRTYGLDKRLERGMPVRKRE CCCCCCHHHHHCCCEECCCCCHHHCCHHHHHHHHHHHCCCCHHCCCHHHHHCCCCHHHHH VLEAMMARNIHCPSSSSMGRLFDAVAFWCGFDGAAGCEGHAAMMLESWAAEASGEKMPGD HHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC AYEWVMHEEGGLLELDWRPLMKSVDEDLLEGVSRGCIARKFHESLVNLVFDVAERFCLDR HHHHEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVLGGGCFQNAFLLEGLAGMAQSRRCQLSLPQRVPCNDGGISLGQVAAVVRQWKG HHHCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]