Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

Click here to switch to the map view.

The map label for this gene is hypF [H]

Identifier: 187735892

GI number: 187735892

Start: 1671794

End: 1674121

Strand: Direct

Name: hypF [H]

Synonym: Amuc_1399

Alternate gene names: 187735892

Gene position: 1671794-1674121 (Clockwise)

Preceding gene: 187735891

Following gene: 187735893

Centisome position: 62.75

GC content: 61.47

Gene sequence:

>2328_bases
ATGGCCATCACCACCATTGAACAGGCCGCCGCGGCATTGAAATTTGAGATAGCCGGCATGGTTCAGGGGGTCGGCTTCCG
TCCCCATGTGTACCGTTTGGCGGTACGGCACGGATTGAAAGGGTTTGTGCGCAATACGGAGTCCGGCGTGGAGATTCATG
TGGAAGGGGAGCCCGGCGCTCCGGAGCGTTTCTGGACCGCGCTGATGGACGGCCTGCCGGAGCATGCCCGGGTTTATGGA
GTGGAGCGGACCGTATGCGAGCCTGCCGGTTTTGAGGAATTCCGCATTGAGGAAAGCGATTCCACCCCCGGAGGCGTTCC
GGTGATGCTGCCGGATCTGGCTCCGTGCCCAGAGTGCCTGGAAGAAATGCACGACCCGTCTTCCCGCCGGTATCATTATC
CGTTTACCAACTGCACGCACTGCGGTCCCCGCTATTCCATTATTGAGACAATGCCGTATGACCGAGCGAGAACCAGCATG
AAGGGGTTCCGAATGTGTCCGGAGTGCCGGAGGGAGTACCAGGATGTGGAGGACAGGCGTTTTCACGCACAGCCTATCGG
CTGCCCGTCCTGCGGTCCTTCCGTGAAGGTGCTGTTTTCAGATGGTTCAGAACTGGGGTTCGGCCATGGGTTTGATACCC
CCGCGGCACAGGTGGCATGGGTGCTGGCGGACGGTTTGATTGTGGCCCTGCTGGGCGTAGGAGGTTTTCAATTGCTGGCA
GATGCTTCTTCGGAAGCTGCCGTCAGGCGTCTCCGGCGGTTGAAGGAGCGTGACGCCAAGCCTTTTGCCGTGATGGTGCC
GGATGTGGCTGCGGCGGAGAGGCTGTGCCGCCTGTCGGAGGAGGAAAGGCGCCTGCTGACTTCTCCGGCCGCCCCCATTG
TACTGGCCCGGGGGGGGAAGGATGTGGATCTGGCTCCTTCCGTGTGCATGTTCAGCCGTTTTGTGGGGATAATGCTTCCG
TCTTCCCCTCTTCATGCGCTGCTGATGGATGTGTGGGGAAAGCCTCTGGTGGTGACCAGCGGGAACCTGAGCGGCGAGCC
CCTGTGCGTCTCCGTGGAGGAGGGGCTGGAGAAACTGGGCCATGTGGCGGATGTGTTTTTGGTGCATGACCGTCCGGTAG
TGCGGCCCGTGGACGATTCCGTGGTCCGCGTTACGGACGGCAGGGCCATGATGGTTCGCCGCGCCCGCGGATATGCCCCG
CGGCCTGTGTGGCGCACATCTGCGGCGGCTCCCGACATGCTCGCCTTGGGGGCCGGACTGAAGAATACCATCTGCTGGCT
GAAAAGGGGCGTGGCTGTCATGAGCCAGCATCTCGGTGACCTGAGCAGTGCGGCTTCTCTGAACGCTTTTGAGCGGACGG
TGGAGGCGCTGGGCAGAACCCTGGATGCCGTTCCGCAGGTAATTGCCGTGGACGCCCATCCGGACGGCCCCACTTTTGCC
CTTGGCCGGCGTCTGGCGCGGAAGTGGAATGCAACGGTTGTCCCTGTGCAGCATCATCAGGCTCATGTGCTGGCCTGCGC
CGTGGAAAATGAAACGCCGTTTCCCGCTTTGGGCATAGCTTGGGACGGGACGGGGTTCGGTACGGACGGAACGGTATGGG
GAGGGGAATTTTTTGTGTTGGAGGAAGAGGGTGAGCCGCGCAGGGTGGCCCGCCTCAGGCCGTTTCTTCTTCCTGGTGGG
GACGAAGCGGTTCGGGAACCTTCCCGGTGCGCCTGTTCCCTGGCCCGTCAGATGGGGCCGTGGCGTACGTACGGGCTTGA
TAAGCGTCTGGAGAGGGGGATGCCTGTGCGGAAACGCGAGGTTCTGGAGGCGATGATGGCCCGGAATATCCATTGTCCGT
CCTCCTCGTCCATGGGGCGGTTGTTTGATGCCGTGGCTTTCTGGTGCGGTTTTGACGGTGCGGCGGGGTGTGAGGGCCAT
GCCGCCATGATGCTGGAATCATGGGCCGCGGAAGCTTCCGGGGAAAAAATGCCGGGGGACGCGTATGAATGGGTCATGCA
TGAAGAAGGGGGATTGCTGGAACTGGATTGGCGGCCGCTGATGAAGTCTGTGGATGAAGATTTGTTGGAAGGCGTTTCCC
GCGGCTGCATCGCCCGCAAGTTTCATGAGAGCCTGGTGAATCTGGTTTTTGACGTGGCGGAGCGTTTCTGCCTGGATAGG
CTGGTGCTGGGCGGCGGATGTTTTCAGAATGCCTTTTTGCTTGAAGGACTGGCGGGGATGGCCCAGTCTAGAAGGTGCCA
GTTGTCTCTGCCCCAGCGGGTGCCGTGCAATGACGGGGGAATTTCCCTGGGGCAGGTTGCGGCGGTCGTACGCCAATGGA
AAGGATAG

Upstream 100 bases:

>100_bases
GTGATTGAGGTTTCTTCCAAGACCGGCGAAGGAATGGAGGCCTGGTGCGAGGAGATTGTGGAACGTGCGCGCCGCGCCCG
GGAAGGCACGATTCAGCATC

Downstream 100 bases:

>100_bases
AATATGTGTTTGGCCGTTCCCGGAAAGATTGTGAGCGTCAATGAGACGGACCCTTTGTTCAGATTGGGGGTGGTGGATTT
TGGCGGCGTGACCCGTGAAG

Product: (NiFe) hydrogenase maturation protein HypF

Products: NA

Alternate protein names: Carbamoyl phosphate-converting enzyme hypF; [NiFe]-hydrogenase maturation factor hypF; Hydrogenase maturation protein hypF [H]

Number of amino acids: Translated: 775; Mature: 774

Protein sequence:

>775_residues
MAITTIEQAAAALKFEIAGMVQGVGFRPHVYRLAVRHGLKGFVRNTESGVEIHVEGEPGAPERFWTALMDGLPEHARVYG
VERTVCEPAGFEEFRIEESDSTPGGVPVMLPDLAPCPECLEEMHDPSSRRYHYPFTNCTHCGPRYSIIETMPYDRARTSM
KGFRMCPECRREYQDVEDRRFHAQPIGCPSCGPSVKVLFSDGSELGFGHGFDTPAAQVAWVLADGLIVALLGVGGFQLLA
DASSEAAVRRLRRLKERDAKPFAVMVPDVAAAERLCRLSEEERRLLTSPAAPIVLARGGKDVDLAPSVCMFSRFVGIMLP
SSPLHALLMDVWGKPLVVTSGNLSGEPLCVSVEEGLEKLGHVADVFLVHDRPVVRPVDDSVVRVTDGRAMMVRRARGYAP
RPVWRTSAAAPDMLALGAGLKNTICWLKRGVAVMSQHLGDLSSAASLNAFERTVEALGRTLDAVPQVIAVDAHPDGPTFA
LGRRLARKWNATVVPVQHHQAHVLACAVENETPFPALGIAWDGTGFGTDGTVWGGEFFVLEEEGEPRRVARLRPFLLPGG
DEAVREPSRCACSLARQMGPWRTYGLDKRLERGMPVRKREVLEAMMARNIHCPSSSSMGRLFDAVAFWCGFDGAAGCEGH
AAMMLESWAAEASGEKMPGDAYEWVMHEEGGLLELDWRPLMKSVDEDLLEGVSRGCIARKFHESLVNLVFDVAERFCLDR
LVLGGGCFQNAFLLEGLAGMAQSRRCQLSLPQRVPCNDGGISLGQVAAVVRQWKG

Sequences:

>Translated_775_residues
MAITTIEQAAAALKFEIAGMVQGVGFRPHVYRLAVRHGLKGFVRNTESGVEIHVEGEPGAPERFWTALMDGLPEHARVYG
VERTVCEPAGFEEFRIEESDSTPGGVPVMLPDLAPCPECLEEMHDPSSRRYHYPFTNCTHCGPRYSIIETMPYDRARTSM
KGFRMCPECRREYQDVEDRRFHAQPIGCPSCGPSVKVLFSDGSELGFGHGFDTPAAQVAWVLADGLIVALLGVGGFQLLA
DASSEAAVRRLRRLKERDAKPFAVMVPDVAAAERLCRLSEEERRLLTSPAAPIVLARGGKDVDLAPSVCMFSRFVGIMLP
SSPLHALLMDVWGKPLVVTSGNLSGEPLCVSVEEGLEKLGHVADVFLVHDRPVVRPVDDSVVRVTDGRAMMVRRARGYAP
RPVWRTSAAAPDMLALGAGLKNTICWLKRGVAVMSQHLGDLSSAASLNAFERTVEALGRTLDAVPQVIAVDAHPDGPTFA
LGRRLARKWNATVVPVQHHQAHVLACAVENETPFPALGIAWDGTGFGTDGTVWGGEFFVLEEEGEPRRVARLRPFLLPGG
DEAVREPSRCACSLARQMGPWRTYGLDKRLERGMPVRKREVLEAMMARNIHCPSSSSMGRLFDAVAFWCGFDGAAGCEGH
AAMMLESWAAEASGEKMPGDAYEWVMHEEGGLLELDWRPLMKSVDEDLLEGVSRGCIARKFHESLVNLVFDVAERFCLDR
LVLGGGCFQNAFLLEGLAGMAQSRRCQLSLPQRVPCNDGGISLGQVAAVVRQWKG
>Mature_774_residues
AITTIEQAAAALKFEIAGMVQGVGFRPHVYRLAVRHGLKGFVRNTESGVEIHVEGEPGAPERFWTALMDGLPEHARVYGV
ERTVCEPAGFEEFRIEESDSTPGGVPVMLPDLAPCPECLEEMHDPSSRRYHYPFTNCTHCGPRYSIIETMPYDRARTSMK
GFRMCPECRREYQDVEDRRFHAQPIGCPSCGPSVKVLFSDGSELGFGHGFDTPAAQVAWVLADGLIVALLGVGGFQLLAD
ASSEAAVRRLRRLKERDAKPFAVMVPDVAAAERLCRLSEEERRLLTSPAAPIVLARGGKDVDLAPSVCMFSRFVGIMLPS
SPLHALLMDVWGKPLVVTSGNLSGEPLCVSVEEGLEKLGHVADVFLVHDRPVVRPVDDSVVRVTDGRAMMVRRARGYAPR
PVWRTSAAAPDMLALGAGLKNTICWLKRGVAVMSQHLGDLSSAASLNAFERTVEALGRTLDAVPQVIAVDAHPDGPTFAL
GRRLARKWNATVVPVQHHQAHVLACAVENETPFPALGIAWDGTGFGTDGTVWGGEFFVLEEEGEPRRVARLRPFLLPGGD
EAVREPSRCACSLARQMGPWRTYGLDKRLERGMPVRKREVLEAMMARNIHCPSSSSMGRLFDAVAFWCGFDGAAGCEGHA
AMMLESWAAEASGEKMPGDAYEWVMHEEGGLLELDWRPLMKSVDEDLLEGVSRGCIARKFHESLVNLVFDVAERFCLDRL
VLGGGCFQNAFLLEGLAGMAQSRRCQLSLPQRVPCNDGGISLGQVAAVVRQWKG

Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb

COG id: COG0068

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367152, Length=781, Percent_Identity=37.0038412291933, Blast_Score=379, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001792
- InterPro:   IPR017968
- InterPro:   IPR004421
- InterPro:   IPR017945
- InterPro:   IPR006070
- InterPro:   IPR011125 [H]

Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]

EC number: NA

Molecular weight: Translated: 84688; Mature: 84557

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAITTIEQAAAALKFEIAGMVQGVGFRPHVYRLAVRHGLKGFVRNTESGVEIHVEGEPGA
CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
PERFWTALMDGLPEHARVYGVERTVCEPAGFEEFRIEESDSTPGGVPVMLPDLAPCPECL
HHHHHHHHHHCCCHHHHEECCHHHHCCCCCCCCEEEECCCCCCCCCEEECCCCCCCHHHH
EEMHDPSSRRYHYPFTNCTHCGPRYSIIETMPYDRARTSMKGFRMCPECRREYQDVEDRR
HHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCHHHHHHHCCHHHHH
FHAQPIGCPSCGPSVKVLFSDGSELGFGHGFDTPAAQVAWVLADGLIVALLGVGGFQLLA
EECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
DASSEAAVRRLRRLKERDAKPFAVMVPDVAAAERLCRLSEEERRLLTSPAAPIVLARGGK
CCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCHHHHHHHCCCCCCEEEECCCC
DVDLAPSVCMFSRFVGIMLPSSPLHALLMDVWGKPLVVTSGNLSGEPLCVSVEEGLEKLG
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEHHHHHHHHH
HVADVFLVHDRPVVRPVDDSVVRVTDGRAMMVRRARGYAPRPVWRTSAAAPDMLALGAGL
HHHEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCH
KNTICWLKRGVAVMSQHLGDLSSAASLNAFERTVEALGRTLDAVPQVIAVDAHPDGPTFA
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHH
LGRRLARKWNATVVPVQHHQAHVLACAVENETPFPALGIAWDGTGFGTDGTVWGGEFFVL
HHHHHHHHCCCEEEEECCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCEEECCEEEEE
EEEGEPRRVARLRPFLLPGGDEAVREPSRCACSLARQMGPWRTYGLDKRLERGMPVRKRE
CCCCCCHHHHHCCCEECCCCCHHHCCHHHHHHHHHHHCCCCHHCCCHHHHHCCCCHHHHH
VLEAMMARNIHCPSSSSMGRLFDAVAFWCGFDGAAGCEGHAAMMLESWAAEASGEKMPGD
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
AYEWVMHEEGGLLELDWRPLMKSVDEDLLEGVSRGCIARKFHESLVNLVFDVAERFCLDR
HHHHEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVLGGGCFQNAFLLEGLAGMAQSRRCQLSLPQRVPCNDGGISLGQVAAVVRQWKG
HHHCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
AITTIEQAAAALKFEIAGMVQGVGFRPHVYRLAVRHGLKGFVRNTESGVEIHVEGEPGA
CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
PERFWTALMDGLPEHARVYGVERTVCEPAGFEEFRIEESDSTPGGVPVMLPDLAPCPECL
HHHHHHHHHHCCCHHHHEECCHHHHCCCCCCCCEEEECCCCCCCCCEEECCCCCCCHHHH
EEMHDPSSRRYHYPFTNCTHCGPRYSIIETMPYDRARTSMKGFRMCPECRREYQDVEDRR
HHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCHHHHHHHCCHHHHH
FHAQPIGCPSCGPSVKVLFSDGSELGFGHGFDTPAAQVAWVLADGLIVALLGVGGFQLLA
EECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
DASSEAAVRRLRRLKERDAKPFAVMVPDVAAAERLCRLSEEERRLLTSPAAPIVLARGGK
CCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCHHHHHHHCCCCCCEEEECCCC
DVDLAPSVCMFSRFVGIMLPSSPLHALLMDVWGKPLVVTSGNLSGEPLCVSVEEGLEKLG
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEHHHHHHHHH
HVADVFLVHDRPVVRPVDDSVVRVTDGRAMMVRRARGYAPRPVWRTSAAAPDMLALGAGL
HHHEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCH
KNTICWLKRGVAVMSQHLGDLSSAASLNAFERTVEALGRTLDAVPQVIAVDAHPDGPTFA
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHH
LGRRLARKWNATVVPVQHHQAHVLACAVENETPFPALGIAWDGTGFGTDGTVWGGEFFVL
HHHHHHHHCCCEEEEECCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCEEECCEEEEE
EEEGEPRRVARLRPFLLPGGDEAVREPSRCACSLARQMGPWRTYGLDKRLERGMPVRKRE
CCCCCCHHHHHCCCEECCCCCHHHCCHHHHHHHHHHHCCCCHHCCCHHHHHCCCCHHHHH
VLEAMMARNIHCPSSSSMGRLFDAVAFWCGFDGAAGCEGHAAMMLESWAAEASGEKMPGD
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
AYEWVMHEEGGLLELDWRPLMKSVDEDLLEGVSRGCIARKFHESLVNLVFDVAERFCLDR
HHHHEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVLGGGCFQNAFLLEGLAGMAQSRRCQLSLPQRVPCNDGGISLGQVAAVVRQWKG
HHHCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]