Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is hypB [H]
Identifier: 187735891
GI number: 187735891
Start: 1671073
End: 1671813
Strand: Direct
Name: hypB [H]
Synonym: Amuc_1398
Alternate gene names: 187735891
Gene position: 1671073-1671813 (Clockwise)
Preceding gene: 187735888
Following gene: 187735892
Centisome position: 62.73
GC content: 56.55
Gene sequence:
>741_bases ATGTGTAAAGAATGTGGATGCGGGGGGGAGCTCTCCCATGAAAGTCACGGCCACGGCATGGATGTCCATGTTCCGGTGTT GGATGCCAATGACCGGCTGGCAGAGCGCAACAGAGGTTTTTTTGCTGCAAAAAACCTTTTGGTTATCAATGTTTTTTCTT CTCCGGGGTCAGGAAAGACTTCTCTGTTGCAGAAGACGGCGGAGATGCTCCGCGGCCGTGTGCGCATGGGGGTTATCGTA GGGGATTTGGCGACGGATAATGATGCGGAACGCCTGAGCCGAGCGGATATCCCCGTGGTGCAGATTACAACGGGCACCAT GTGCCATCTGGACGCCCGCATGATTGCGGAGGCCATGAAGAAAATGCCTCTGGACGATCTCGACGTTTTGATTATTGAGA ATGTGGGCAATCTGGTTTGCCCGGCTTCCTATGACCTGGGGGAAGGCGTGCGCGTGGTGCTGCTTTCCGTGACGGAGGGT GAGGACAAGCCGTTGAAATATCCTCCCATGTTCCATTCTGCGGATGTTGCCCTGGTGACCAAGTCCGATCTGGCGGATGC CGTGGATTTTAACCGTGACGCCGCCCTGGCCGCGCTGAACAAGGTGGCTCACCATGCGCACGTGATTGAGGTTTCTTCCA AGACCGGCGAAGGAATGGAGGCCTGGTGCGAGGAGATTGTGGAACGTGCGCGCCGCGCCCGGGAAGGCACGATTCAGCAT CATGGCCATCACCACCATTGA
Upstream 100 bases:
>100_bases TTAAAAAGAAAACCGGGGCAGTTTTGTTTGATTTCATAGGAGTATGACGTGAAACGAATGAGTTTTTTTTCTCTTTGGGA ATCTAATATCAGTATTGATT
Downstream 100 bases:
>100_bases ACAGGCCGCCGCGGCATTGAAATTTGAGATAGCCGGCATGGTTCAGGGGGTCGGCTTCCGTCCCCATGTGTACCGTTTGG CGGTACGGCACGGATTGAAA
Product: hydrogenase accessory protein HypB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 246; Mature: 246
Protein sequence:
>246_residues MCKECGCGGELSHESHGHGMDVHVPVLDANDRLAERNRGFFAAKNLLVINVFSSPGSGKTSLLQKTAEMLRGRVRMGVIV GDLATDNDAERLSRADIPVVQITTGTMCHLDARMIAEAMKKMPLDDLDVLIIENVGNLVCPASYDLGEGVRVVLLSVTEG EDKPLKYPPMFHSADVALVTKSDLADAVDFNRDAALAALNKVAHHAHVIEVSSKTGEGMEAWCEEIVERARRAREGTIQH HGHHHH
Sequences:
>Translated_246_residues MCKECGCGGELSHESHGHGMDVHVPVLDANDRLAERNRGFFAAKNLLVINVFSSPGSGKTSLLQKTAEMLRGRVRMGVIV GDLATDNDAERLSRADIPVVQITTGTMCHLDARMIAEAMKKMPLDDLDVLIIENVGNLVCPASYDLGEGVRVVLLSVTEG EDKPLKYPPMFHSADVALVTKSDLADAVDFNRDAALAALNKVAHHAHVIEVSSKTGEGMEAWCEEIVERARRAREGTIQH HGHHHH >Mature_246_residues MCKECGCGGELSHESHGHGMDVHVPVLDANDRLAERNRGFFAAKNLLVINVFSSPGSGKTSLLQKTAEMLRGRVRMGVIV GDLATDNDAERLSRADIPVVQITTGTMCHLDARMIAEAMKKMPLDDLDVLIIENVGNLVCPASYDLGEGVRVVLLSVTEG EDKPLKYPPMFHSADVALVTKSDLADAVDFNRDAALAALNKVAHHAHVIEVSSKTGEGMEAWCEEIVERARRAREGTIQH HGHHHH
Specific function: Could be involved in nickel binding and accumulation [H]
COG id: COG0378
COG function: function code OK; Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hypB/hupM family [H]
Homologues:
Organism=Escherichia coli, GI1789082, Length=203, Percent_Identity=52.2167487684729, Blast_Score=214, Evalue=6e-57,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003495 - InterPro: IPR004392 - InterPro: IPR012202 [H]
Pfam domain/function: PF02492 cobW [H]
EC number: NA
Molecular weight: Translated: 26766; Mature: 26766
Theoretical pI: Translated: 6.22; Mature: 6.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCKECGCGGELSHESHGHGMDVHVPVLDANDRLAERNRGFFAAKNLLVINVFSSPGSGKT CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCEEEECCEEEEEEECCCCCCHH SLLQKTAEMLRGRVRMGVIVGDLATDNDAERLSRADIPVVQITTGTMCHLDARMIAEAMK HHHHHHHHHHHCHHHEEEEEECCCCCCHHHHHHHCCCCEEEEECCCEEHHHHHHHHHHHH KMPLDDLDVLIIENVGNLVCPASYDLGEGVRVVLLSVTEGEDKPLKYPPMFHSADVALVT HCCCCCCCEEEEECCCCEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEE KSDLADAVDFNRDAALAALNKVAHHAHVIEVSSKTGEGMEAWCEEIVERARRAREGTIQH CCHHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHC HGHHHH CCCCCC >Mature Secondary Structure MCKECGCGGELSHESHGHGMDVHVPVLDANDRLAERNRGFFAAKNLLVINVFSSPGSGKT CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCEEEECCEEEEEEECCCCCCHH SLLQKTAEMLRGRVRMGVIVGDLATDNDAERLSRADIPVVQITTGTMCHLDARMIAEAMK HHHHHHHHHHHCHHHEEEEEECCCCCCHHHHHHHCCCCEEEEECCCEEHHHHHHHHHHHH KMPLDDLDVLIIENVGNLVCPASYDLGEGVRVVLLSVTEGEDKPLKYPPMFHSADVALVT HCCCCCCCEEEEECCCCEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEE KSDLADAVDFNRDAALAALNKVAHHAHVIEVSSKTGEGMEAWCEEIVERARRAREGTIQH CCHHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHC HGHHHH CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]