Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is aspS [H]

Identifier: 187735889

GI number: 187735889

Start: 1667480

End: 1669273

Strand: Reverse

Name: aspS [H]

Synonym: Amuc_1396

Alternate gene names: 187735889

Gene position: 1669273-1667480 (Counterclockwise)

Preceding gene: 187735890

Following gene: 187735884

Centisome position: 62.66

GC content: 60.03

Gene sequence:

>1794_bases
ATGAACTCATACCGCACTCATACCTGCAGCGAATTGCGCGCTGCGAACATCGGCAAGCCGACCACCCTCATCGGCTGGGT
AGATTCCGTCCGGGACCATGGCGGCGTCATATTTATCGACTTGCGCGACCGCTCCGGCATCACGCAGGTAGTCTTTCACC
CGGAAGTCAATCAGGATGTGGCGAAAGCCTCCCAGCAGCTCCGCTCCGAAGACATGATCCAGATTTCCGGCACCGTGGCC
GCCCGCCTGAAAACGGATACGGTGGACACGACCAATGCGGACCTCCCCACCGGGGAAATCGAAGTCTCCGCAGACACCCT
GAACGTCATCAACAAGGCTGACGTGCTCCCCTTCCAGCTGGATCGGGCCCTCTCCAACGAAGACCTGCGCCTCAAATACC
GCTTTCTGGACCTGCGCCGCCCGACCATGGCCCGCAACATGCAGATCCGCCACCGCGTCACCAAATCCACGCGCGACTAT
CTGGACGAGCACGGCTTTCTGGAAATTGAGACGCCCATCCTCTCCAAATCCACGCCGGAAGGCGCACGGGACTTCCTGGT
GCCCTCCCGCCTGGCGCCCGGCAAATTCTACGCGCTGCCCCAGGCCCCGCAGCAATACAAGCAGCTGCTCATGGTAGCCG
GCATGGAACGCTATTTCCAAATTGCCCGCTGCTTCCGTGACGAAGACCTGCGCGCGGACCGCCAGCCGGAATTCACCCAG
GTGGACATTGAAGCTTCCTTCATCACGCCGGAAGACATCTACAACCTGGTGGAAGGCCTGCTCAAACGCGTGTACAAGGA
ATCCCTGGGCGTGGACATTCCCACCCCCTTCCCCCGCATGACCTGGAAGGAAGCAATGGATCAGTACGGTTCCGACAAGC
CGGAACGCCGCTTCGGCATGAAGCTAACGGACGTCTCCTCCATCTTTGAAAACAGCGGCTTCAAGGTATTCGCCTCAGCC
GTAAGCAACGGCGGCGTGGTCAAGGCCATCAACGCCAAGGGATTCGGTTCCGCCTCCGTTGGCCAGATTGACGCCCTGAC
GAAAACTGCCGTGGAAGCCGGAGCCAAAGGCCTGGCCTACATCAAGGTGCGCGAGGAAGACTGGAGAAGCCCCATCTCCA
AATTCCTTTCCGACGAAGAAAAACAAAAACTCACGGAAGCCCTGGACATCGAAACAGGAGACCTCGTTCTCTTTGCCGCC
GGCCCGTGGGAACCCTCCTGCGATATCCTGGGCCGCGTGCGCCTGCAATGCGCCGAATTCATGGAACTGCTCAAGGACAA
CAAGGAACGCGACTTCCTGTGGGTTATTGAATTCCCGCTGGTGGGCTGGGATGAGGAAGAGCAGCGCTGGGTCGCCATCC
ACCACCCCTTTACCCGCCCCGTCAAGGAAGACGAACAAAAACTGCTCAGCGGGGAACTCTCCGCAGACCTTCGCGCGCAG
GCCTACGATGTGGTGCTCAACGGCACGGAGCTGGGAGGCGGTTCCATCCGCATCCATGAACGCGACCTGCAGTCCGCCAT
GTTCAAGGCGCTCGGCATCACGGAAGAACAGGCCCGCGAACAATTCGGCCACATTCTGGACGCTTTCAGCTTCGGCGCTC
CACCCCACGGAGGCCTTGCGCTGGGCCTCGACCGCCTGGTCATGATGATTTGCAACGCGGAATCCATCCGCGAAGTCATC
GCATTCCCGAAAAACAACCGGGGAGCGGATCTGATGAGCGACTCCCCCGCCGCCGCGGAAGACCGTCAGCTGCGCGACAT
TCACATTCAGGTGAAACTGCCCGCTAAAAAATAG

Upstream 100 bases:

>100_bases
CCTCATCCCCCGTCGCCATGGACGACCTGTTTGACGCCGTGGCTTCACTCACCGGAAGCAATTGACACCGTTCTTTCCCC
TTCTTCCATTTTCAATAAAG

Downstream 100 bases:

>100_bases
CCGGATCCCTTAAACAAACCCCCGGATGGCAATCATTCCATCCGGGGTTTTTTCATGCAGGAAAAACAAAACTCCCTTTC
CCGGCAGGCAGCGCACCATT

Product: aspartyl-tRNA synthetase

Products: NA

Alternate protein names: Aspartate--tRNA ligase; AspRS [H]

Number of amino acids: Translated: 597; Mature: 597

Protein sequence:

>597_residues
MNSYRTHTCSELRAANIGKPTTLIGWVDSVRDHGGVIFIDLRDRSGITQVVFHPEVNQDVAKASQQLRSEDMIQISGTVA
ARLKTDTVDTTNADLPTGEIEVSADTLNVINKADVLPFQLDRALSNEDLRLKYRFLDLRRPTMARNMQIRHRVTKSTRDY
LDEHGFLEIETPILSKSTPEGARDFLVPSRLAPGKFYALPQAPQQYKQLLMVAGMERYFQIARCFRDEDLRADRQPEFTQ
VDIEASFITPEDIYNLVEGLLKRVYKESLGVDIPTPFPRMTWKEAMDQYGSDKPERRFGMKLTDVSSIFENSGFKVFASA
VSNGGVVKAINAKGFGSASVGQIDALTKTAVEAGAKGLAYIKVREEDWRSPISKFLSDEEKQKLTEALDIETGDLVLFAA
GPWEPSCDILGRVRLQCAEFMELLKDNKERDFLWVIEFPLVGWDEEEQRWVAIHHPFTRPVKEDEQKLLSGELSADLRAQ
AYDVVLNGTELGGGSIRIHERDLQSAMFKALGITEEQAREQFGHILDAFSFGAPPHGGLALGLDRLVMMICNAESIREVI
AFPKNNRGADLMSDSPAAAEDRQLRDIHIQVKLPAKK

Sequences:

>Translated_597_residues
MNSYRTHTCSELRAANIGKPTTLIGWVDSVRDHGGVIFIDLRDRSGITQVVFHPEVNQDVAKASQQLRSEDMIQISGTVA
ARLKTDTVDTTNADLPTGEIEVSADTLNVINKADVLPFQLDRALSNEDLRLKYRFLDLRRPTMARNMQIRHRVTKSTRDY
LDEHGFLEIETPILSKSTPEGARDFLVPSRLAPGKFYALPQAPQQYKQLLMVAGMERYFQIARCFRDEDLRADRQPEFTQ
VDIEASFITPEDIYNLVEGLLKRVYKESLGVDIPTPFPRMTWKEAMDQYGSDKPERRFGMKLTDVSSIFENSGFKVFASA
VSNGGVVKAINAKGFGSASVGQIDALTKTAVEAGAKGLAYIKVREEDWRSPISKFLSDEEKQKLTEALDIETGDLVLFAA
GPWEPSCDILGRVRLQCAEFMELLKDNKERDFLWVIEFPLVGWDEEEQRWVAIHHPFTRPVKEDEQKLLSGELSADLRAQ
AYDVVLNGTELGGGSIRIHERDLQSAMFKALGITEEQAREQFGHILDAFSFGAPPHGGLALGLDRLVMMICNAESIREVI
AFPKNNRGADLMSDSPAAAEDRQLRDIHIQVKLPAKK
>Mature_597_residues
MNSYRTHTCSELRAANIGKPTTLIGWVDSVRDHGGVIFIDLRDRSGITQVVFHPEVNQDVAKASQQLRSEDMIQISGTVA
ARLKTDTVDTTNADLPTGEIEVSADTLNVINKADVLPFQLDRALSNEDLRLKYRFLDLRRPTMARNMQIRHRVTKSTRDY
LDEHGFLEIETPILSKSTPEGARDFLVPSRLAPGKFYALPQAPQQYKQLLMVAGMERYFQIARCFRDEDLRADRQPEFTQ
VDIEASFITPEDIYNLVEGLLKRVYKESLGVDIPTPFPRMTWKEAMDQYGSDKPERRFGMKLTDVSSIFENSGFKVFASA
VSNGGVVKAINAKGFGSASVGQIDALTKTAVEAGAKGLAYIKVREEDWRSPISKFLSDEEKQKLTEALDIETGDLVLFAA
GPWEPSCDILGRVRLQCAEFMELLKDNKERDFLWVIEFPLVGWDEEEQRWVAIHHPFTRPVKEDEQKLLSGELSADLRAQ
AYDVVLNGTELGGGSIRIHERDLQSAMFKALGITEEQAREQFGHILDAFSFGAPPHGGLALGLDRLVMMICNAESIREVI
AFPKNNRGADLMSDSPAAAEDRQLRDIHIQVKLPAKK

Specific function: Unknown

COG id: COG0173

COG function: function code J; Aspartyl-tRNA synthetase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]

Homologues:

Organism=Homo sapiens, GI40789249, Length=602, Percent_Identity=41.8604651162791, Blast_Score=464, Evalue=1e-131,
Organism=Homo sapiens, GI5031815, Length=310, Percent_Identity=26.1290322580645, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI194272210, Length=311, Percent_Identity=26.0450160771704, Blast_Score=87, Evalue=4e-17,
Organism=Homo sapiens, GI45439306, Length=238, Percent_Identity=27.3109243697479, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI4758762, Length=289, Percent_Identity=26.2975778546713, Blast_Score=76, Evalue=1e-13,
Organism=Escherichia coli, GI1788173, Length=596, Percent_Identity=46.9798657718121, Blast_Score=532, Evalue=1e-152,
Organism=Escherichia coli, GI1789256, Length=316, Percent_Identity=27.5316455696203, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI1790571, Length=300, Percent_Identity=28, Blast_Score=95, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI32566633, Length=598, Percent_Identity=34.7826086956522, Blast_Score=333, Evalue=2e-91,
Organism=Caenorhabditis elegans, GI71994340, Length=330, Percent_Identity=23.6363636363636, Blast_Score=85, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17535927, Length=330, Percent_Identity=23.6363636363636, Blast_Score=85, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17535925, Length=330, Percent_Identity=23.6363636363636, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17551876, Length=260, Percent_Identity=25, Blast_Score=77, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71984122, Length=313, Percent_Identity=25.8785942492013, Blast_Score=74, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6325153, Length=646, Percent_Identity=33.1269349845201, Blast_Score=298, Evalue=1e-81,
Organism=Saccharomyces cerevisiae, GI6321807, Length=296, Percent_Identity=24.3243243243243, Blast_Score=74, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6323011, Length=241, Percent_Identity=27.8008298755187, Blast_Score=71, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6324256, Length=120, Percent_Identity=29.1666666666667, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6320242, Length=153, Percent_Identity=27.4509803921569, Blast_Score=64, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24584738, Length=600, Percent_Identity=39.6666666666667, Blast_Score=404, Evalue=1e-113,
Organism=Drosophila melanogaster, GI24640851, Length=252, Percent_Identity=26.984126984127, Blast_Score=83, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24640849, Length=252, Percent_Identity=26.984126984127, Blast_Score=83, Evalue=6e-16,
Organism=Drosophila melanogaster, GI17136276, Length=258, Percent_Identity=27.906976744186, Blast_Score=83, Evalue=7e-16,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004364
- InterPro:   IPR018150
- InterPro:   IPR006195
- InterPro:   IPR020564
- InterPro:   IPR004524
- InterPro:   IPR018153
- InterPro:   IPR002312
- InterPro:   IPR004115
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365 [H]

Pfam domain/function: PF02938 GAD; PF00152 tRNA-synt_2; PF01336 tRNA_anti [H]

EC number: =6.1.1.12 [H]

Molecular weight: Translated: 67033; Mature: 67033

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS50862 AA_TRNA_LIGASE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSYRTHTCSELRAANIGKPTTLIGWVDSVRDHGGVIFIDLRDRSGITQVVFHPEVNQDV
CCCCCCCCHHHHHHCCCCCCCEEEHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCHHH
AKASQQLRSEDMIQISGTVAARLKTDTVDTTNADLPTGEIEVSADTLNVINKADVLPFQL
HHHHHHHCCCCEEEEECEEEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCHHHH
DRALSNEDLRLKYRFLDLRRPTMARNMQIRHRVTKSTRDYLDEHGFLEIETPILSKSTPE
HHHCCCCCEEEEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
GARDFLVPSRLAPGKFYALPQAPQQYKQLLMVAGMERYFQIARCFRDEDLRADRQPEFTQ
CHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
VDIEASFITPEDIYNLVEGLLKRVYKESLGVDIPTPFPRMTWKEAMDQYGSDKPERRFGM
EEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHCC
KLTDVSSIFENSGFKVFASAVSNGGVVKAINAKGFGSASVGQIDALTKTAVEAGAKGLAY
CHHHHHHHHHCCCCEEEEEHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEE
IKVREEDWRSPISKFLSDEEKQKLTEALDIETGDLVLFAAGPWEPSCDILGRVRLQCAEF
EEECCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
MELLKDNKERDFLWVIEFPLVGWDEEEQRWVAIHHPFTRPVKEDEQKLLSGELSADLRAQ
HHHHHCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCHHCE
AYDVVLNGTELGGGSIRIHERDLQSAMFKALGITEEQAREQFGHILDAFSFGAPPHGGLA
EEEEEEECCEECCCEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHH
LGLDRLVMMICNAESIREVIAFPKNNRGADLMSDSPAAAEDRQLRDIHIQVKLPAKK
HHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
>Mature Secondary Structure
MNSYRTHTCSELRAANIGKPTTLIGWVDSVRDHGGVIFIDLRDRSGITQVVFHPEVNQDV
CCCCCCCCHHHHHHCCCCCCCEEEHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCHHH
AKASQQLRSEDMIQISGTVAARLKTDTVDTTNADLPTGEIEVSADTLNVINKADVLPFQL
HHHHHHHCCCCEEEEECEEEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCHHHH
DRALSNEDLRLKYRFLDLRRPTMARNMQIRHRVTKSTRDYLDEHGFLEIETPILSKSTPE
HHHCCCCCEEEEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
GARDFLVPSRLAPGKFYALPQAPQQYKQLLMVAGMERYFQIARCFRDEDLRADRQPEFTQ
CHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
VDIEASFITPEDIYNLVEGLLKRVYKESLGVDIPTPFPRMTWKEAMDQYGSDKPERRFGM
EEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHCC
KLTDVSSIFENSGFKVFASAVSNGGVVKAINAKGFGSASVGQIDALTKTAVEAGAKGLAY
CHHHHHHHHHCCCCEEEEEHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEE
IKVREEDWRSPISKFLSDEEKQKLTEALDIETGDLVLFAAGPWEPSCDILGRVRLQCAEF
EEECCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
MELLKDNKERDFLWVIEFPLVGWDEEEQRWVAIHHPFTRPVKEDEQKLLSGELSADLRAQ
HHHHHCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCHHCE
AYDVVLNGTELGGGSIRIHERDLQSAMFKALGITEEQAREQFGHILDAFSFGAPPHGGLA
EEEEEEECCEECCCEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHH
LGLDRLVMMICNAESIREVIAFPKNNRGADLMSDSPAAAEDRQLRDIHIQVKLPAKK
HHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA