Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is ispG
Identifier: 187735881
GI number: 187735881
Start: 1657289
End: 1659046
Strand: Direct
Name: ispG
Synonym: Amuc_1388
Alternate gene names: 187735881
Gene position: 1657289-1659046 (Clockwise)
Preceding gene: 187735880
Following gene: 187735882
Centisome position: 62.21
GC content: 59.39
Gene sequence:
>1758_bases ATGCAGTCTTCCTATTGTCCGAGTCCTTATCGATATACGCGCCGCGTAACCCGTGAAGTCATGGTGGGGAATGTGGGGGT GGGCGGATCCAATCCCATCCGGATCCAGTCCATGCTGACGTCCGATACGCGGGATACGGATGCCTGCGTGAAGGAGGCTT TGGAGCTGGCGGAGGCAGGGTGCGAGATTATCCGCCTGACCGCCCAGACCAAGGCGTATGCCGCCAATTTGGAGAATATT GCCCGGGAATTGCGCGCTGCCGGCTGCCATGTGCCTCTGGTGGCCGATATCCACTTCAAGCCGGATGCCGCGATGGAGGC TGCCAAATGGGTGGAGAAGATTCGTATTAATCCGGGCAATTTCGTTGATAAGAAGAAGTTTGAAGTGCGGGAGTATTCCG ACGCCGAATACCGCGAGGAGCTGGACCGCCTGAAGGAAGAATTTACGCCCCTGGTTCTGTTTTGCCGGGAGCATGGCCGC GCGATGCGCATCGGTTCCAACCATGGCTCCCTGTCCGACCGCATTCTGAACCGCTTTGGCGATACGCCGGAGGGGATGGT GGAGAGCGCGATTGAGTTTGCCCAGATTGCCCGCGACCTGGATTACCATTCCCTGGTGTTTTCCATGAAGGCTTCCAACG TCAAGGTGATGGTGGCCGCTTACCGATTGCTGGTGGAGCGCATGAACGCCCTGGGGCCGGATTGGAATTATCCCATTCAT CTGGGGGTGACGGAAGCCGGGGGCGGAGAGGACGGCCGCATCAAGAGCGCCGTGGGCATCGGCTCCCTGCTGACGGACGG CATTGGTGATACCCTGCGCGTTTCCCTGACGGAGGACGCTGTGAGGGAGGTGCCCGTGGCTTACCGCCTGTCCAATCCTT TCCAGCCGTCGGAGCGTTCCGATGACCCGGTTTCCTTCCCTGAACCGGAGTTGAGCTATGATCCCCTGAAGTTTTCCAAA AGGCAGGGTGGGCTGGCGATGTATTATGGCGTACGCCTGGGCTGGGAACAGCCTGTGCGCGTGGCGGTTCCTGACGCCGG GTTTTACGCCCTGCAGACAGAACGGGAGGCGATGGGGGACATGATGCCTGAATTATCCCTGGGGCAGCTGGATGCCATTG AGGTGGATCCCCGGTGCGATGCCGATCTGGAGCCGTTGAAGGAGCTGGCGGAACCGTCTATTGTTACTGTGAAGAACGGG CTGGCTATGGAGCCTGTATATGCGTTCCGCCTTCTGGCTGCCCGTATTGAGGACAGGCATCTGATCCTGCTGAAGGATAC GCTGGTGCCCGGTTCCGTTTCCGGGGAAGACGTGCCGCTGACGGCTGCCCGCAATATCGGCTCCCTGCTGTGCGACGGGA TTGGAGACGCCGTGCTGATTCAGGGCGAGTCGGACCCCCGTTTGGCTTCTTTCCTGGGATTCAATATTTTGCAGGCTACG GGAACGAGGCTGACGCGGGCGGATTACGTTTCCTGCCCGTCCTGCGGGCGTACCCTGTACAATATCCAGGAGGCGACGGC CCGCATCCGGAAAGCCACGGAACATCTGAAAGGGGTGAAGATTGCCGTGATGGGATGTATTGTGAATGGCCCCGGCGAGA TGGCGGATGCGGATTTCGGTTATGTGGGCGGCGCGCCGAACAAGATCAACCTGTATGTGAAGCATACGCCTGTGAAGTTC AATATTCCCCAGGAGGAGGCTGTGGAACGGCTGGTGGATCTGATCAAGGAGTATGGGCGGTGGGTGGACCCCAAGTGA
Upstream 100 bases:
>100_bases GCGGTACCGCTCCCGTTTTTCCGGTTACCGGATTGGCGGGAAAAGGCTTTCCGTTTTGAAGGATTGTTGACAGGGGAATC TGGCGCGGTAGAGTGGTTTC
Downstream 100 bases:
>100_bases GGTTTTAACGTTGAGGGAACTTTTTTGATGCGGAGAGTGTTCATCAGCGGCGGTCACGGCGGTTTGGCGCGGGCCATCGT GGAATGTTTTTCCGCTGCGG
Product: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
Products: NA
Alternate protein names: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
Number of amino acids: Translated: 585; Mature: 585
Protein sequence:
>585_residues MQSSYCPSPYRYTRRVTREVMVGNVGVGGSNPIRIQSMLTSDTRDTDACVKEALELAEAGCEIIRLTAQTKAYAANLENI ARELRAAGCHVPLVADIHFKPDAAMEAAKWVEKIRINPGNFVDKKKFEVREYSDAEYREELDRLKEEFTPLVLFCREHGR AMRIGSNHGSLSDRILNRFGDTPEGMVESAIEFAQIARDLDYHSLVFSMKASNVKVMVAAYRLLVERMNALGPDWNYPIH LGVTEAGGGEDGRIKSAVGIGSLLTDGIGDTLRVSLTEDAVREVPVAYRLSNPFQPSERSDDPVSFPEPELSYDPLKFSK RQGGLAMYYGVRLGWEQPVRVAVPDAGFYALQTEREAMGDMMPELSLGQLDAIEVDPRCDADLEPLKELAEPSIVTVKNG LAMEPVYAFRLLAARIEDRHLILLKDTLVPGSVSGEDVPLTAARNIGSLLCDGIGDAVLIQGESDPRLASFLGFNILQAT GTRLTRADYVSCPSCGRTLYNIQEATARIRKATEHLKGVKIAVMGCIVNGPGEMADADFGYVGGAPNKINLYVKHTPVKF NIPQEEAVERLVDLIKEYGRWVDPK
Sequences:
>Translated_585_residues MQSSYCPSPYRYTRRVTREVMVGNVGVGGSNPIRIQSMLTSDTRDTDACVKEALELAEAGCEIIRLTAQTKAYAANLENI ARELRAAGCHVPLVADIHFKPDAAMEAAKWVEKIRINPGNFVDKKKFEVREYSDAEYREELDRLKEEFTPLVLFCREHGR AMRIGSNHGSLSDRILNRFGDTPEGMVESAIEFAQIARDLDYHSLVFSMKASNVKVMVAAYRLLVERMNALGPDWNYPIH LGVTEAGGGEDGRIKSAVGIGSLLTDGIGDTLRVSLTEDAVREVPVAYRLSNPFQPSERSDDPVSFPEPELSYDPLKFSK RQGGLAMYYGVRLGWEQPVRVAVPDAGFYALQTEREAMGDMMPELSLGQLDAIEVDPRCDADLEPLKELAEPSIVTVKNG LAMEPVYAFRLLAARIEDRHLILLKDTLVPGSVSGEDVPLTAARNIGSLLCDGIGDAVLIQGESDPRLASFLGFNILQAT GTRLTRADYVSCPSCGRTLYNIQEATARIRKATEHLKGVKIAVMGCIVNGPGEMADADFGYVGGAPNKINLYVKHTPVKF NIPQEEAVERLVDLIKEYGRWVDPK >Mature_585_residues MQSSYCPSPYRYTRRVTREVMVGNVGVGGSNPIRIQSMLTSDTRDTDACVKEALELAEAGCEIIRLTAQTKAYAANLENI ARELRAAGCHVPLVADIHFKPDAAMEAAKWVEKIRINPGNFVDKKKFEVREYSDAEYREELDRLKEEFTPLVLFCREHGR AMRIGSNHGSLSDRILNRFGDTPEGMVESAIEFAQIARDLDYHSLVFSMKASNVKVMVAAYRLLVERMNALGPDWNYPIH LGVTEAGGGEDGRIKSAVGIGSLLTDGIGDTLRVSLTEDAVREVPVAYRLSNPFQPSERSDDPVSFPEPELSYDPLKFSK RQGGLAMYYGVRLGWEQPVRVAVPDAGFYALQTEREAMGDMMPELSLGQLDAIEVDPRCDADLEPLKELAEPSIVTVKNG LAMEPVYAFRLLAARIEDRHLILLKDTLVPGSVSGEDVPLTAARNIGSLLCDGIGDAVLIQGESDPRLASFLGFNILQAT GTRLTRADYVSCPSCGRTLYNIQEATARIRKATEHLKGVKIAVMGCIVNGPGEMADADFGYVGGAPNKINLYVKHTPVKF NIPQEEAVERLVDLIKEYGRWVDPK
Specific function: Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
COG id: COG0821
COG function: function code I; Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ispG family
Homologues:
Organism=Escherichia coli, GI1788863, Length=297, Percent_Identity=34.6801346801347, Blast_Score=162, Evalue=7e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): ISPG_AKKM8 (B2UKT9)
Other databases:
- EMBL: CP001071 - RefSeq: YP_001877993.1 - GeneID: 6275639 - GenomeReviews: CP001071_GR - KEGG: amu:Amuc_1388 - HOGENOM: HBG335271 - OMA: SMRIGTN - ProtClustDB: CLSK2337898 - HAMAP: MF_00159 - InterPro: IPR017178 - InterPro: IPR004588 - PIRSF: PIRSF037336 - TIGRFAMs: TIGR00612
Pfam domain/function: PF04551 GcpE
EC number: =1.17.7.1
Molecular weight: Translated: 64488; Mature: 64488
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSSYCPSPYRYTRRVTREVMVGNVGVGGSNPIRIQSMLTSDTRDTDACVKEALELAEAG CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC CEIIRLTAQTKAYAANLENIARELRAAGCHVPLVADIHFKPDAAMEAAKWVEKIRINPGN CEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCC FVDKKKFEVREYSDAEYREELDRLKEEFTPLVLFCREHGRAMRIGSNHGSLSDRILNRFG CCCCCCHHHHCCCCHHHHHHHHHHHHHCCHHEEEEHHCCCEEEECCCCCCHHHHHHHHCC DTPEGMVESAIEFAQIARDLDYHSLVFSMKASNVKVMVAAYRLLVERMNALGPDWNYPIH CCHHHHHHHHHHHHHHHHCCCHHHHEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCCCEE LGVTEAGGGEDGRIKSAVGIGSLLTDGIGDTLRVSLTEDAVREVPVAYRLSNPFQPSERS EEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECHHHHHHCCEEEEECCCCCCCCCC DDPVSFPEPELSYDPLKFSKRQGGLAMYYGVRLGWEQPVRVAVPDAGFYALQTEREAMGD CCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEEECCCCCCEEEECCCCEEEEECHHHHHHH MMPELSLGQLDAIEVDPRCDADLEPLKELAEPSIVTVKNGLAMEPVYAFRLLAARIEDRH HCCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCE LILLKDTLVPGSVSGEDVPLTAARNIGSLLCDGIGDAVLIQGESDPRLASFLGFNILQAT EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHC GTRLTRADYVSCPSCGRTLYNIQEATARIRKATEHLKGVKIAVMGCIVNGPGEMADADFG CCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCC YVGGAPNKINLYVKHTPVKFNIPQEEAVERLVDLIKEYGRWVDPK CCCCCCCEEEEEEEECCEEEECCHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MQSSYCPSPYRYTRRVTREVMVGNVGVGGSNPIRIQSMLTSDTRDTDACVKEALELAEAG CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC CEIIRLTAQTKAYAANLENIARELRAAGCHVPLVADIHFKPDAAMEAAKWVEKIRINPGN CEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCC FVDKKKFEVREYSDAEYREELDRLKEEFTPLVLFCREHGRAMRIGSNHGSLSDRILNRFG CCCCCCHHHHCCCCHHHHHHHHHHHHHCCHHEEEEHHCCCEEEECCCCCCHHHHHHHHCC DTPEGMVESAIEFAQIARDLDYHSLVFSMKASNVKVMVAAYRLLVERMNALGPDWNYPIH CCHHHHHHHHHHHHHHHHCCCHHHHEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCCCEE LGVTEAGGGEDGRIKSAVGIGSLLTDGIGDTLRVSLTEDAVREVPVAYRLSNPFQPSERS EEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECHHHHHHCCEEEEECCCCCCCCCC DDPVSFPEPELSYDPLKFSKRQGGLAMYYGVRLGWEQPVRVAVPDAGFYALQTEREAMGD CCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEEECCCCCCEEEECCCCEEEEECHHHHHHH MMPELSLGQLDAIEVDPRCDADLEPLKELAEPSIVTVKNGLAMEPVYAFRLLAARIEDRH HCCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCE LILLKDTLVPGSVSGEDVPLTAARNIGSLLCDGIGDAVLIQGESDPRLASFLGFNILQAT EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHC GTRLTRADYVSCPSCGRTLYNIQEATARIRKATEHLKGVKIAVMGCIVNGPGEMADADFG CCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCC YVGGAPNKINLYVKHTPVKFNIPQEEAVERLVDLIKEYGRWVDPK CCCCCCCEEEEEEEECCEEEECCHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA