Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is ybhS [H]
Identifier: 187735873
GI number: 187735873
Start: 1645119
End: 1646225
Strand: Reverse
Name: ybhS [H]
Synonym: Amuc_1380
Alternate gene names: 187735873
Gene position: 1646225-1645119 (Counterclockwise)
Preceding gene: 187735874
Following gene: 187735872
Centisome position: 61.79
GC content: 61.7
Gene sequence:
>1107_bases ATGACCGCCTCCCTCAAAAGAATAGGAGCCCTCATCGTCAAGGAACTCCACCAGGTGGTCCGGGACCCCGGCAATGTGGG CATTGCGGTCATCCTTCCGGCCGTGCTCCTGCTCCTCTTCGGCTACGGCATGAGCATGGACATCAAAAACGTGCGCATCG CGTACCTGGCCGTCCCCGCCTCCAGCCAGTCCACGGACCTGGAAACAAGGCTTACCCTTTCCAGATATTTCCAGACCACG CGCGTCTTCTCCACCCGGGAGGCTGAAGAAAAACTGCGCACCCATGAAGCGGACGCCTTCATCGCCCTGCAAAGCAACGC GCCGGACACGCTCCACAATGGAACCACGAAAGTCCAGATTGTCGTCAACGGAGTCAACGCCAACCAGGCCACCCTCATCC GCAACTACCTTCAGGCCGTCGTCGGCTCCTGGGCGTCTTCCCTGGGCGGGCGGACAGCCCCCGTGCTGGACATGCAGACG CGCACCCGCTTCAATGAAGCCAACGACAGCCACTACTACCTGGTTCCCGGCGTCATCGTCACCATCATGACCATGATCGG GGCGCTCCTCACCTCCCTGGTCATGGCGCGGGAATATGAACGCGGCACGCTGGAAAGCCTCTTCGTCACGCCCGTGGGCA GCGGAGAAATCCTGGCGGCCAAGGCCGCCACCAACTTCCTGCTGGGCATGGTCAGCCTGGCTATCTCCATGCTCTTCGCC GCCTTCGTCTTCGGCATCCCCATCCGCGGCTCCCTCACTCTGCTGCTGGCGGTTTCCGCCCTGTTCCTGATTGTGGCCCT GGGGTTGGGGCTGGTCATCTCCACCGCCACCAAAAACCAGTTCCTGGCCTGCCAATTCGCCATTATGGGCACCTTCATGC CGGCCCTCATGCTGTCCGGCTTCCTGTATGACATCCTGAACATGCCACCCGCCGTCCGGGCCATCACCTACCTCATCCCG GCCCGCTACTACGTCACCCTGCTCCAGACCCTCTTCCTGGCCGGGGACATCCCTTCCGTCATCATTCCCTGCTGCATCAC GCTGGGCGTCTTTGCCGTGGTGCTCATGGGAATCGCCAGGATGAAAGCACCCAAATCCCTCGAATAG
Upstream 100 bases:
>100_bases GCAAACACGCTCCCCCGCGTGAAGACGGAGCCCCCGCTTCTCTGGAAGACGCCTTCCTGGCCATCACGGAAGAACACATG AAAAAAGGAGGAGGAGAAAC
Downstream 100 bases:
>100_bases CGCCATGGACTTCCTGATCAGAATAGCCTCCCTCGTCAGAAAAGAACTGCTGGCCGTGCTCAGGGACAAAAAAAGCCGGC TGGCCCTCATCATCCCTCCC
Product: ABC transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 368; Mature: 367
Protein sequence:
>368_residues MTASLKRIGALIVKELHQVVRDPGNVGIAVILPAVLLLLFGYGMSMDIKNVRIAYLAVPASSQSTDLETRLTLSRYFQTT RVFSTREAEEKLRTHEADAFIALQSNAPDTLHNGTTKVQIVVNGVNANQATLIRNYLQAVVGSWASSLGGRTAPVLDMQT RTRFNEANDSHYYLVPGVIVTIMTMIGALLTSLVMAREYERGTLESLFVTPVGSGEILAAKAATNFLLGMVSLAISMLFA AFVFGIPIRGSLTLLLAVSALFLIVALGLGLVISTATKNQFLACQFAIMGTFMPALMLSGFLYDILNMPPAVRAITYLIP ARYYVTLLQTLFLAGDIPSVIIPCCITLGVFAVVLMGIARMKAPKSLE
Sequences:
>Translated_368_residues MTASLKRIGALIVKELHQVVRDPGNVGIAVILPAVLLLLFGYGMSMDIKNVRIAYLAVPASSQSTDLETRLTLSRYFQTT RVFSTREAEEKLRTHEADAFIALQSNAPDTLHNGTTKVQIVVNGVNANQATLIRNYLQAVVGSWASSLGGRTAPVLDMQT RTRFNEANDSHYYLVPGVIVTIMTMIGALLTSLVMAREYERGTLESLFVTPVGSGEILAAKAATNFLLGMVSLAISMLFA AFVFGIPIRGSLTLLLAVSALFLIVALGLGLVISTATKNQFLACQFAIMGTFMPALMLSGFLYDILNMPPAVRAITYLIP ARYYVTLLQTLFLAGDIPSVIIPCCITLGVFAVVLMGIARMKAPKSLE >Mature_367_residues TASLKRIGALIVKELHQVVRDPGNVGIAVILPAVLLLLFGYGMSMDIKNVRIAYLAVPASSQSTDLETRLTLSRYFQTTR VFSTREAEEKLRTHEADAFIALQSNAPDTLHNGTTKVQIVVNGVNANQATLIRNYLQAVVGSWASSLGGRTAPVLDMQTR TRFNEANDSHYYLVPGVIVTIMTMIGALLTSLVMAREYERGTLESLFVTPVGSGEILAAKAATNFLLGMVSLAISMLFAA FVFGIPIRGSLTLLLAVSALFLIVALGLGLVISTATKNQFLACQFAIMGTFMPALMLSGFLYDILNMPPAVRAITYLIPA RYYVTLLQTLFLAGDIPSVIIPCCITLGVFAVVLMGIARMKAPKSLE
Specific function: Unknown
COG id: COG0842
COG function: function code V; ABC-type multidrug transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-2 domain [H]
Homologues:
Organism=Escherichia coli, GI1787011, Length=371, Percent_Identity=39.0835579514825, Blast_Score=280, Evalue=1e-76, Organism=Escherichia coli, GI48994943, Length=357, Percent_Identity=28.5714285714286, Blast_Score=146, Evalue=2e-36, Organism=Escherichia coli, GI1787010, Length=339, Percent_Identity=28.9085545722714, Blast_Score=136, Evalue=2e-33, Organism=Escherichia coli, GI226510979, Length=267, Percent_Identity=26.9662921348315, Blast_Score=83, Evalue=4e-17, Organism=Drosophila melanogaster, GI85725260, Length=355, Percent_Identity=24.2253521126761, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI85725262, Length=355, Percent_Identity=24.2253521126761, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI24650855, Length=366, Percent_Identity=24.0437158469945, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24650853, Length=366, Percent_Identity=24.0437158469945, Blast_Score=69, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000412 - InterPro: IPR013525 [H]
Pfam domain/function: PF01061 ABC2_membrane [H]
EC number: NA
Molecular weight: Translated: 39714; Mature: 39582
Theoretical pI: Translated: 9.45; Mature: 9.45
Prosite motif: PS51012 ABC_TM2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASLKRIGALIVKELHQVVRDPGNVGIAVILPAVLLLLFGYGMSMDIKNVRIAYLAVPA CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECC SSQSTDLETRLTLSRYFQTTRVFSTREAEEKLRTHEADAFIALQSNAPDTLHNGTTKVQI CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEE VVNGVNANQATLIRNYLQAVVGSWASSLGGRTAPVLDMQTRTRFNEANDSHYYLVPGVIV EEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHCCCCCCCEEEEHHHHHH TIMTMIGALLTSLVMAREYERGTLESLFVTPVGSGEILAAKAATNFLLGMVSLAISMLFA HHHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHH AFVFGIPIRGSLTLLLAVSALFLIVALGLGLVISTATKNQFLACQFAIMGTFMPALMLSG HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHH FLYDILNMPPAVRAITYLIPARYYVTLLQTLFLAGDIPSVIIPCCITLGVFAVVLMGIAR HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH MKAPKSLE HCCCCCCC >Mature Secondary Structure TASLKRIGALIVKELHQVVRDPGNVGIAVILPAVLLLLFGYGMSMDIKNVRIAYLAVPA CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECC SSQSTDLETRLTLSRYFQTTRVFSTREAEEKLRTHEADAFIALQSNAPDTLHNGTTKVQI CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEE VVNGVNANQATLIRNYLQAVVGSWASSLGGRTAPVLDMQTRTRFNEANDSHYYLVPGVIV EEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHCCCCCCCEEEEHHHHHH TIMTMIGALLTSLVMAREYERGTLESLFVTPVGSGEILAAKAATNFLLGMVSLAISMLFA HHHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHH AFVFGIPIRGSLTLLLAVSALFLIVALGLGLVISTATKNQFLACQFAIMGTFMPALMLSG HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHH FLYDILNMPPAVRAITYLIPARYYVTLLQTLFLAGDIPSVIIPCCITLGVFAVVLMGIAR HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH MKAPKSLE HCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]