Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735858
Identifier: 187735858
GI number: 187735858
Start: 1634688
End: 1635446
Strand: Reverse
Name: 187735858
Synonym: Amuc_1365
Alternate gene names: NA
Gene position: 1635446-1634688 (Counterclockwise)
Preceding gene: 187735861
Following gene: 187735857
Centisome position: 61.39
GC content: 35.84
Gene sequence:
>759_bases ATGGATGAAGAAAAAGATCCTCAAGCCATCTATAAGCAGAATGTCAGAGCTTGGCTTCGAGACCGAGGTCTTTCTATGAA GTGGCTAGCTAGCTGGTTGGGGAAGTCAGAAGGAACAGTTAAAAATTGGTTTTACGGAGGGAATCCTATTATTGAAGAGA ATGTTGATAGTATTGATGCACTTCAGGTAAATTATCATAAAGACAATCGCTATCATTTTATAAATCCGGATTTCGATCCA TCTCCAAAGGCGTATAATATTCCCAAGAAACAATTTTATATTGCGGTGGTTGATGAAGCTGATGCCTCATTGATGGCATA TGCATTAAATGCTGAAATAGAGAATGTTTTTTATAATCCACAATCAGAGATTACTATTAATAGAAGTCACATATCAATAA TTACTAATATACTTACAAGCAAAACTCGTGAACTACTGCTTCAAGAGAAGGAAAAATGTAAAAAGAAAAATATCAAATTT AACATTCTTACAATGGAGCAAGCTGAAGCCTCAATGGTTGCCTTATCTGACATTCCAACAGATGAATATTGGGGAGTTGT AGTAAGTGATAATTTCCCACTTCTGTATGCGAGGGTAGCTGCCAAAATAGATGGTTTTTCAAATTTCAGCGAATGGGTTG CAAGCGTGTTGAGAAAATGGGCAGAAGAACGTATTAATAAAGACTTAGATAATTTTTTAAAAAAAGAAGAAGGCTCTCTC TTCCCATGGGACAATATGGATGACGAAATCCCATTCTAA
Upstream 100 bases:
>100_bases TCATATAATCTCACATAAAGTCCACCAAAATATTTTAGCATGTGAAAAAATTACTCGCACATGGCTTGACATATCACATA TAATCACACTATATAAATCT
Downstream 100 bases:
>100_bases AATTCCCCTGTCAACCAAGCTTAACAACTGCTGGACTTTTTGATCCATTTCCAGAAGCCTTCTCTCTTGTTTTCTCTTTT TTGGTATGATATTTTTAACG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 252; Mature: 252
Protein sequence:
>252_residues MDEEKDPQAIYKQNVRAWLRDRGLSMKWLASWLGKSEGTVKNWFYGGNPIIEENVDSIDALQVNYHKDNRYHFINPDFDP SPKAYNIPKKQFYIAVVDEADASLMAYALNAEIENVFYNPQSEITINRSHISIITNILTSKTRELLLQEKEKCKKKNIKF NILTMEQAEASMVALSDIPTDEYWGVVVSDNFPLLYARVAAKIDGFSNFSEWVASVLRKWAEERINKDLDNFLKKEEGSL FPWDNMDDEIPF
Sequences:
>Translated_252_residues MDEEKDPQAIYKQNVRAWLRDRGLSMKWLASWLGKSEGTVKNWFYGGNPIIEENVDSIDALQVNYHKDNRYHFINPDFDP SPKAYNIPKKQFYIAVVDEADASLMAYALNAEIENVFYNPQSEITINRSHISIITNILTSKTRELLLQEKEKCKKKNIKF NILTMEQAEASMVALSDIPTDEYWGVVVSDNFPLLYARVAAKIDGFSNFSEWVASVLRKWAEERINKDLDNFLKKEEGSL FPWDNMDDEIPF >Mature_252_residues MDEEKDPQAIYKQNVRAWLRDRGLSMKWLASWLGKSEGTVKNWFYGGNPIIEENVDSIDALQVNYHKDNRYHFINPDFDP SPKAYNIPKKQFYIAVVDEADASLMAYALNAEIENVFYNPQSEITINRSHISIITNILTSKTRELLLQEKEKCKKKNIKF NILTMEQAEASMVALSDIPTDEYWGVVVSDNFPLLYARVAAKIDGFSNFSEWVASVLRKWAEERINKDLDNFLKKEEGSL FPWDNMDDEIPF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29246; Mature: 29246
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDEEKDPQAIYKQNVRAWLRDRGLSMKWLASWLGKSEGTVKNWFYGGNPIIEENVDSIDA CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCEEE LQVNYHKDNRYHFINPDFDPSPKAYNIPKKQFYIAVVDEADASLMAYALNAEIENVFYNP EEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEHHHCCHHHHEEECC QSEITINRSHISIITNILTSKTRELLLQEKEKCKKKNIKFNILTMEQAEASMVALSDIPT CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEECCCC DEYWGVVVSDNFPLLYARVAAKIDGFSNFSEWVASVLRKWAEERINKDLDNFLKKEEGSL CHHCEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC FPWDNMDDEIPF CCCCCCCCCCCC >Mature Secondary Structure MDEEKDPQAIYKQNVRAWLRDRGLSMKWLASWLGKSEGTVKNWFYGGNPIIEENVDSIDA CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCEEE LQVNYHKDNRYHFINPDFDPSPKAYNIPKKQFYIAVVDEADASLMAYALNAEIENVFYNP EEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEHHHCCHHHHEEECC QSEITINRSHISIITNILTSKTRELLLQEKEKCKKKNIKFNILTMEQAEASMVALSDIPT CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEECCCC DEYWGVVVSDNFPLLYARVAAKIDGFSNFSEWVASVLRKWAEERINKDLDNFLKKEEGSL CHHCEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC FPWDNMDDEIPF CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA