Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735849
Identifier: 187735849
GI number: 187735849
Start: 1628768
End: 1630327
Strand: Direct
Name: 187735849
Synonym: Amuc_1356
Alternate gene names: NA
Gene position: 1628768-1630327 (Clockwise)
Preceding gene: 187735848
Following gene: 187735850
Centisome position: 61.14
GC content: 56.86
Gene sequence:
>1560_bases ATGATGATTCTGAGTCAGGCAGCCCCGTTTGACATGGCCACTACCAGCGGCATTGCCCAATCGGTGACGCTTCGTTTTGT GGACGGTGCCGGCGCCGCAAAAGATATTTCCGGCCATGAGTTCCGTTGTGCTGTCCGCGGCCCTGGCGCCGCCGCCATCA AATGCGAGCCTGTAGACGCCAATACGGCTCTTTTGTCGTGGAGCCCTCTCAAGGCCGGAACGCATGCTTATGACCTTTTC ATGACCTCTCCTGATGGGGCGGAGCGCCCCTTGATTAAAGGGGAAATCCAGGCCGCTTCCCGTGTTACGCCGCCGGGCAG TGAAGATGTGGTTACAATTGGAGACGTGAAAATCATGATCCCTGACGCCGCGGAAGGAGAGGTGAAAATTATCGATCCTT CCGTGGATGCTGCTGAACGGGCTGAATCCGCTGCTCAAGAAGCCTCAAATGCCAGGAACGATGCTCAGAATGCCAAAAAA GAAGCGGAAAAATCAGCAGAAAGTGCCGCGACATCCGCCACGGCGGCCCAACAGGCCCTTGAGGCCATTCCGCAGGTGGA CGCATCCGGCAACATGACGCTGGACGGCAATATCACCGCGGCGGGAGGCACGTTTGACGGGGCCGTCAACGCCAATGGAG GTATCAACATCCCGCTTGCCGCGGGGGCGCTGACCGATATGTCAGCGGTCAACCGCCTTTACGCCGCCGGGCTGGCTGCC GTAACTGATGCTTTTTCCGTCAGGTGTTATCCGCTCCCGGCGAATTGCTCGTCTTCCAACGGGACGGTTTTCAAAACAGA CAAGGAACCCAATTCCCTTTATTTCAACGTCCCGGCTAATTCCGCCTTTACCGTGAAATGCGGCCTCGTGACCAACGCGA GGCCCATGCACAATTATTCCAGCATCCGGGGGTGGGTGGCTCCGGTGCGCCTTCCGGCTGTCAGCGCTAAATTCACGGCC AGGTTCGGACAGATGACAACGGTCGTGCGCATGGGAAGGGACAGGGACGCATTTACGCTGGTGCCGGATCAGGCGGCGGG CGGCTACAGGATTGGGGAGATTATCGATATTACGTTTGATCATGTCCGGGACGCGGCCGCAGGGGGGTATCACATTCGTG TCCGGGAGATTTATTATTCCAATGCCGAGCAGAAATGGAAGATGAAGACGACGCAGGCCCTCGCGCCGGAGACGTCTTCC AATTCCGGTTATCCCGTCTGCGTGTACGCGGTGGTTTACGAGCAATACCAGGACGGAGGATATGATACCGAAGACAGGGG AGCGTTGTGGCTGCTGCATGGCGGGAATTCCACCCGCGGCTGCGTCAAGATCGCCACGGTGAGGGGAGTCCATTGCTTTG AGAATATTTATCCCTTTTCCGGATATTATCTTGATATGGAGAATGCCAACAGCTGGGCGTTGGCCGGAGCGTTCCTTCCG GCGACGATGCACTTGCATTGCAATAATGTCAATCCGGCGTATTACGGGTTTTCCTCCATGGAGAGCAATATCATTGTCTC CGAGGCGGTGGAGGATTTTGTTGACCCGGAAGCCGAATAA
Upstream 100 bases:
>100_bases CGTCCGGTAATAATTCCCACATGTGGGACTGTTCCTGCATGGCGGTGATTTTTGCCATGATTCACCGGATGATTTAAGCG CAACGGGCGCGCACTAGTAT
Downstream 100 bases:
>100_bases GAAACGACGGAAGAAACGACTACCGAAGATTGAGCATGAATAATTCAGAGATACAGATACAGTTTCCCCGGCCCGGCGAG TGGGGAGAATTCACCCTGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 519; Mature: 519
Protein sequence:
>519_residues MMILSQAAPFDMATTSGIAQSVTLRFVDGAGAAKDISGHEFRCAVRGPGAAAIKCEPVDANTALLSWSPLKAGTHAYDLF MTSPDGAERPLIKGEIQAASRVTPPGSEDVVTIGDVKIMIPDAAEGEVKIIDPSVDAAERAESAAQEASNARNDAQNAKK EAEKSAESAATSATAAQQALEAIPQVDASGNMTLDGNITAAGGTFDGAVNANGGINIPLAAGALTDMSAVNRLYAAGLAA VTDAFSVRCYPLPANCSSSNGTVFKTDKEPNSLYFNVPANSAFTVKCGLVTNARPMHNYSSIRGWVAPVRLPAVSAKFTA RFGQMTTVVRMGRDRDAFTLVPDQAAGGYRIGEIIDITFDHVRDAAAGGYHIRVREIYYSNAEQKWKMKTTQALAPETSS NSGYPVCVYAVVYEQYQDGGYDTEDRGALWLLHGGNSTRGCVKIATVRGVHCFENIYPFSGYYLDMENANSWALAGAFLP ATMHLHCNNVNPAYYGFSSMESNIIVSEAVEDFVDPEAE
Sequences:
>Translated_519_residues MMILSQAAPFDMATTSGIAQSVTLRFVDGAGAAKDISGHEFRCAVRGPGAAAIKCEPVDANTALLSWSPLKAGTHAYDLF MTSPDGAERPLIKGEIQAASRVTPPGSEDVVTIGDVKIMIPDAAEGEVKIIDPSVDAAERAESAAQEASNARNDAQNAKK EAEKSAESAATSATAAQQALEAIPQVDASGNMTLDGNITAAGGTFDGAVNANGGINIPLAAGALTDMSAVNRLYAAGLAA VTDAFSVRCYPLPANCSSSNGTVFKTDKEPNSLYFNVPANSAFTVKCGLVTNARPMHNYSSIRGWVAPVRLPAVSAKFTA RFGQMTTVVRMGRDRDAFTLVPDQAAGGYRIGEIIDITFDHVRDAAAGGYHIRVREIYYSNAEQKWKMKTTQALAPETSS NSGYPVCVYAVVYEQYQDGGYDTEDRGALWLLHGGNSTRGCVKIATVRGVHCFENIYPFSGYYLDMENANSWALAGAFLP ATMHLHCNNVNPAYYGFSSMESNIIVSEAVEDFVDPEAE >Mature_519_residues MMILSQAAPFDMATTSGIAQSVTLRFVDGAGAAKDISGHEFRCAVRGPGAAAIKCEPVDANTALLSWSPLKAGTHAYDLF MTSPDGAERPLIKGEIQAASRVTPPGSEDVVTIGDVKIMIPDAAEGEVKIIDPSVDAAERAESAAQEASNARNDAQNAKK EAEKSAESAATSATAAQQALEAIPQVDASGNMTLDGNITAAGGTFDGAVNANGGINIPLAAGALTDMSAVNRLYAAGLAA VTDAFSVRCYPLPANCSSSNGTVFKTDKEPNSLYFNVPANSAFTVKCGLVTNARPMHNYSSIRGWVAPVRLPAVSAKFTA RFGQMTTVVRMGRDRDAFTLVPDQAAGGYRIGEIIDITFDHVRDAAAGGYHIRVREIYYSNAEQKWKMKTTQALAPETSS NSGYPVCVYAVVYEQYQDGGYDTEDRGALWLLHGGNSTRGCVKIATVRGVHCFENIYPFSGYYLDMENANSWALAGAFLP ATMHLHCNNVNPAYYGFSSMESNIIVSEAVEDFVDPEAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55027; Mature: 55027
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMILSQAAPFDMATTSGIAQSVTLRFVDGAGAAKDISGHEFRCAVRGPGAAAIKCEPVDA CEEECCCCCCCCHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCC NTALLSWSPLKAGTHAYDLFMTSPDGAERPLIKGEIQAASRVTPPGSEDVVTIGDVKIMI CEEEEEECCCCCCCEEEEEEEECCCCCCCCEEECCCCHHHCCCCCCCCCEEEECCEEEEE PDAAEGEVKIIDPSVDAAERAESAAQEASNARNDAQNAKKEAEKSAESAATSATAAQQAL CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAIPQVDASGNMTLDGNITAAGGTFDGAVNANGGINIPLAAGALTDMSAVNRLYAAGLAA HHHCCCCCCCCEEECCEEEECCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHH VTDAFSVRCYPLPANCSSSNGTVFKTDKEPNSLYFNVPANSAFTVKCGLVTNARPMHNYS HHHHHEEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCEEEEEEEEEECCCCCCCHH SIRGWVAPVRLPAVSAKFTARFGQMTTVVRMGRDRDAFTLVPDQAAGGYRIGEIIDITFD HHCCEECEEECCCCCHHHHHHHHHHEEEHHCCCCCCCEEECCCCCCCCEEECEEEEEEHH HVRDAAAGGYHIRVREIYYSNAEQKWKMKTTQALAPETSSNSGYPVCVYAVVYEQYQDGG HHHHHCCCCEEEEEEEEEECCCCCEEEEEHHHHCCCCCCCCCCCCEEEEEEEHHHHHCCC YDTEDRGALWLLHGGNSTRGCVKIATVRGVHCFENIYPFSGYYLDMENANSWALAGAFLP CCCCCCCEEEEEECCCCCCCEEEEEEECCCHHHHHCCCCCCEEEEECCCCCEEEEEEECE ATMHLHCNNVNPAYYGFSSMESNIIVSEAVEDFVDPEAE EEEEEEECCCCCHHEECCCCCCCEEHHHHHHHHCCCCCC >Mature Secondary Structure MMILSQAAPFDMATTSGIAQSVTLRFVDGAGAAKDISGHEFRCAVRGPGAAAIKCEPVDA CEEECCCCCCCCHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCC NTALLSWSPLKAGTHAYDLFMTSPDGAERPLIKGEIQAASRVTPPGSEDVVTIGDVKIMI CEEEEEECCCCCCCEEEEEEEECCCCCCCCEEECCCCHHHCCCCCCCCCEEEECCEEEEE PDAAEGEVKIIDPSVDAAERAESAAQEASNARNDAQNAKKEAEKSAESAATSATAAQQAL CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAIPQVDASGNMTLDGNITAAGGTFDGAVNANGGINIPLAAGALTDMSAVNRLYAAGLAA HHHCCCCCCCCEEECCEEEECCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHH VTDAFSVRCYPLPANCSSSNGTVFKTDKEPNSLYFNVPANSAFTVKCGLVTNARPMHNYS HHHHHEEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCEEEEEEEEEECCCCCCCHH SIRGWVAPVRLPAVSAKFTARFGQMTTVVRMGRDRDAFTLVPDQAAGGYRIGEIIDITFD HHCCEECEEECCCCCHHHHHHHHHHEEEHHCCCCCCCEEECCCCCCCCEEECEEEEEEHH HVRDAAAGGYHIRVREIYYSNAEQKWKMKTTQALAPETSSNSGYPVCVYAVVYEQYQDGG HHHHHCCCCEEEEEEEEEECCCCCEEEEEHHHHCCCCCCCCCCCCEEEEEEEHHHHHCCC YDTEDRGALWLLHGGNSTRGCVKIATVRGVHCFENIYPFSGYYLDMENANSWALAGAFLP CCCCCCCEEEEEECCCCCCCEEEEEEECCCHHHHHCCCCCCEEEEECCCCCEEEEEEECE ATMHLHCNNVNPAYYGFSSMESNIIVSEAVEDFVDPEAE EEEEEEECCCCCHHEECCCCCCCEEHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA