Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735848
Identifier: 187735848
GI number: 187735848
Start: 1627047
End: 1628744
Strand: Direct
Name: 187735848
Synonym: Amuc_1355
Alternate gene names: NA
Gene position: 1627047-1628744 (Clockwise)
Preceding gene: 187735847
Following gene: 187735849
Centisome position: 61.07
GC content: 50.71
Gene sequence:
>1698_bases ATGAGAGACGTTGAAAAGGCTGCCGGATTTCTGAATCTTTTCGCGGATAACGTATCCGCTGGAATGGACGTGGAGCCGAT AGAATGGATACGTGAAAACGTGGTAGACCAGCAATCGGCGCGGTCTACCCATATTGATTTTACGTTGAGCCCGTTTCTGC TGGAACCCATTGACAAATTCCTGAATGACGGCACGGTCAGGCACATTAACCTGATGGCTCCCACCGGTTCCGGAAAGTCG ACATTGTTCGTCGGCTTGCTTAATTACCTCATTGCCAATGATGCGGGGAATACCTTGGTCGCTTTCCAGAATGAACAGGA AACCTCTGATTTCGCGGAAACGAGGCTTTTTCCCACATTCCGGGATAATAAGGCTTTAAAAAACTTGCTGCCGAAGAAAA GGCATGCGGCCAGGAAAACGGAGATTCTTTTTCCGCACATGAACTTGTGGATGGTCTCCGCTACCAAGGGGCAGTTGCAG TCGAAGTCCTGCCGGTATTTGATTGGTGATGAAATGTGGGCGTGGGAAAAGGGAATGGTCCGGGAGTTCCTGGCCCGCCA CCATGATCGGTTCAACCGTAAAATCCTGATGGTTTCCCAGGGAGGGGACAAGGGGACGGACTGGGTTGACGAGTACGGAA AGGGCCGCATCCACCATTACCATTGGCAATGCCCCGGCTGCCAGGGATGGAATGCCTATGACTGGCGGGATGTCATTTAC AGCAAAGAAGAAAATATTGATTGGGAACGTTTTAAGGAATCCGTCAAAATGGTTTGTCCCCGGTGTTTGCACGAAATAGA GGATACTGTTCACAACCGGCGCCATCTGGCCGGCGGCGGCAAGTACGTGTTTTCCGGCAATACGAGCGCCTTGCCGGAGA TCGTAAGCTACAATTTTAATGCTTTGGCCTGTTACTGGGTATCATGGGCGGATTTGGCCGTGGAATGGATCCTGGCCAAT AAAAAGAAGAGGAACGGGGATATAGAACCGCTGAAAAAGTTTATCCAGAAGCGGCTTGCTCAAAACATTGTGGATTTGGG CGAGAAAGACGACGTGTTGAAAATCCCGCTCACGGCGGAAAGCATGGAGGGGTACGCCGTGGAAAACGAACGGGCGCGCT TCTTAACGGTAGATGTCCAGAAAGGGCACTTTTGGCATACTGTTTACGGCGTGGATGCCGGAGGGGCTTTCCATTTACTT TCAGAGGGGCGTCTTGAAACGTTGGAGGATATTGAACGTAAACAGGCGGAGTTTAACGTGCCTGATCATTGCGTTGCTTT GGACTGCGCTTTTGATACGGATGCCGTGCGGAAGATATGCGGGCTTCATCACTGGTTTTCCATGAATGGGACGGTCAAGG AAGAATACGTGCATAAAATCAGGGGGCGGGGGATTAAATTGATTTATGCGCCTCTTGAGCGGCACATGGTGGAGGGGATT CAATGCCTTCATTTCAACTTTTCTTCCCAGCGGGCGAAGGACGTTCTTGCCGCGCGGATTAAATCGGGGCATTTCAAGGT TCCCCATGATGTTTCTGCCGAGTACATCAAGCAGATGCAGGCTGAAAGCAAACAGGAGTCCATAGACAAGCGCACGGGGA GGGTTTCTCTCAAATGGCTTGCGTCCGGTAATAATTCCCACATGTGGGACTGTTCCTGCATGGCGGTGATTTTTGCCATG ATTCACCGGATGATTTAA
Upstream 100 bases:
>100_bases CGGAAATGGTTCCCATGCTGCGGGAGGAAATCAAGGCCGCTCTGTATTCCATTGCGGAAGAATCCAGGGCCCAGATCAAG ATAATCAGCCGGGCGGAACA
Downstream 100 bases:
>100_bases GCGCAACGGGCGCGCACTAGTATATGATGATTCTGAGTCAGGCAGCCCCGTTTGACATGGCCACTACCAGCGGCATTGCC CAATCGGTGACGCTTCGTTT
Product: Bacteriophage tail assembly protein-like protein
Products: NA
Alternate protein names: Terminase GpA; Phage Terminase GpA; Bacteriophage Tail Assembly Protein-Like Protein
Number of amino acids: Translated: 565; Mature: 565
Protein sequence:
>565_residues MRDVEKAAGFLNLFADNVSAGMDVEPIEWIRENVVDQQSARSTHIDFTLSPFLLEPIDKFLNDGTVRHINLMAPTGSGKS TLFVGLLNYLIANDAGNTLVAFQNEQETSDFAETRLFPTFRDNKALKNLLPKKRHAARKTEILFPHMNLWMVSATKGQLQ SKSCRYLIGDEMWAWEKGMVREFLARHHDRFNRKILMVSQGGDKGTDWVDEYGKGRIHHYHWQCPGCQGWNAYDWRDVIY SKEENIDWERFKESVKMVCPRCLHEIEDTVHNRRHLAGGGKYVFSGNTSALPEIVSYNFNALACYWVSWADLAVEWILAN KKKRNGDIEPLKKFIQKRLAQNIVDLGEKDDVLKIPLTAESMEGYAVENERARFLTVDVQKGHFWHTVYGVDAGGAFHLL SEGRLETLEDIERKQAEFNVPDHCVALDCAFDTDAVRKICGLHHWFSMNGTVKEEYVHKIRGRGIKLIYAPLERHMVEGI QCLHFNFSSQRAKDVLAARIKSGHFKVPHDVSAEYIKQMQAESKQESIDKRTGRVSLKWLASGNNSHMWDCSCMAVIFAM IHRMI
Sequences:
>Translated_565_residues MRDVEKAAGFLNLFADNVSAGMDVEPIEWIRENVVDQQSARSTHIDFTLSPFLLEPIDKFLNDGTVRHINLMAPTGSGKS TLFVGLLNYLIANDAGNTLVAFQNEQETSDFAETRLFPTFRDNKALKNLLPKKRHAARKTEILFPHMNLWMVSATKGQLQ SKSCRYLIGDEMWAWEKGMVREFLARHHDRFNRKILMVSQGGDKGTDWVDEYGKGRIHHYHWQCPGCQGWNAYDWRDVIY SKEENIDWERFKESVKMVCPRCLHEIEDTVHNRRHLAGGGKYVFSGNTSALPEIVSYNFNALACYWVSWADLAVEWILAN KKKRNGDIEPLKKFIQKRLAQNIVDLGEKDDVLKIPLTAESMEGYAVENERARFLTVDVQKGHFWHTVYGVDAGGAFHLL SEGRLETLEDIERKQAEFNVPDHCVALDCAFDTDAVRKICGLHHWFSMNGTVKEEYVHKIRGRGIKLIYAPLERHMVEGI QCLHFNFSSQRAKDVLAARIKSGHFKVPHDVSAEYIKQMQAESKQESIDKRTGRVSLKWLASGNNSHMWDCSCMAVIFAM IHRMI >Mature_565_residues MRDVEKAAGFLNLFADNVSAGMDVEPIEWIRENVVDQQSARSTHIDFTLSPFLLEPIDKFLNDGTVRHINLMAPTGSGKS TLFVGLLNYLIANDAGNTLVAFQNEQETSDFAETRLFPTFRDNKALKNLLPKKRHAARKTEILFPHMNLWMVSATKGQLQ SKSCRYLIGDEMWAWEKGMVREFLARHHDRFNRKILMVSQGGDKGTDWVDEYGKGRIHHYHWQCPGCQGWNAYDWRDVIY SKEENIDWERFKESVKMVCPRCLHEIEDTVHNRRHLAGGGKYVFSGNTSALPEIVSYNFNALACYWVSWADLAVEWILAN KKKRNGDIEPLKKFIQKRLAQNIVDLGEKDDVLKIPLTAESMEGYAVENERARFLTVDVQKGHFWHTVYGVDAGGAFHLL SEGRLETLEDIERKQAEFNVPDHCVALDCAFDTDAVRKICGLHHWFSMNGTVKEEYVHKIRGRGIKLIYAPLERHMVEGI QCLHFNFSSQRAKDVLAARIKSGHFKVPHDVSAEYIKQMQAESKQESIDKRTGRVSLKWLASGNNSHMWDCSCMAVIFAM IHRMI
Specific function: Unknown
COG id: COG5525
COG function: function code R; Bacteriophage tail assembly protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64867; Mature: 64867
Theoretical pI: Translated: 7.51; Mature: 7.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDVEKAAGFLNLFADNVSAGMDVEPIEWIRENVVDQQSARSTHIDFTLSPFLLEPIDKF CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCHHHCCCEEEEEEECHHHHHHHHHH LNDGTVRHINLMAPTGSGKSTLFVGLLNYLIANDAGNTLVAFQNEQETSDFAETRLFPTF HCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCC RDNKALKNLLPKKRHAARKTEILFPHMNLWMVSATKGQLQSKSCRYLIGDEMWAWEKGMV CCCHHHHHHCCHHHHHHHHCEEEECCCCEEEEECCCCCCCCCCCCEEECCCHHHHHHHHH REFLARHHDRFNRKILMVSQGGDKGTDWVDEYGKGRIHHYHWQCPGCQGWNAYDWRDVIY HHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHH SKEENIDWERFKESVKMVCPRCLHEIEDTVHNRRHLAGGGKYVFSGNTSALPEIVSYNFN CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHCCCC ALACYWVSWADLAVEWILANKKKRNGDIEPLKKFIQKRLAQNIVDLGEKDDVLKIPLTAE EEEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC SMEGYAVENERARFLTVDVQKGHFWHTVYGVDAGGAFHLLSEGRLETLEDIERKQAEFNV CCCCEEEECCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHCCCC PDHCVALDCAFDTDAVRKICGLHHWFSMNGTVKEEYVHKIRGRGIKLIYAPLERHMVEGI CCCEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHH QCLHFNFSSQRAKDVLAARIKSGHFKVPHDVSAEYIKQMQAESKQESIDKRTGRVSLKWL EEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEE ASGNNSHMWDCSCMAVIFAMIHRMI ECCCCCCEECHHHHHHHHHHHHHCC >Mature Secondary Structure MRDVEKAAGFLNLFADNVSAGMDVEPIEWIRENVVDQQSARSTHIDFTLSPFLLEPIDKF CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCHHHCCCEEEEEEECHHHHHHHHHH LNDGTVRHINLMAPTGSGKSTLFVGLLNYLIANDAGNTLVAFQNEQETSDFAETRLFPTF HCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCC RDNKALKNLLPKKRHAARKTEILFPHMNLWMVSATKGQLQSKSCRYLIGDEMWAWEKGMV CCCHHHHHHCCHHHHHHHHCEEEECCCCEEEEECCCCCCCCCCCCEEECCCHHHHHHHHH REFLARHHDRFNRKILMVSQGGDKGTDWVDEYGKGRIHHYHWQCPGCQGWNAYDWRDVIY HHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHH SKEENIDWERFKESVKMVCPRCLHEIEDTVHNRRHLAGGGKYVFSGNTSALPEIVSYNFN CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHCCCC ALACYWVSWADLAVEWILANKKKRNGDIEPLKKFIQKRLAQNIVDLGEKDDVLKIPLTAE EEEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC SMEGYAVENERARFLTVDVQKGHFWHTVYGVDAGGAFHLLSEGRLETLEDIERKQAEFNV CCCCEEEECCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHCCCC PDHCVALDCAFDTDAVRKICGLHHWFSMNGTVKEEYVHKIRGRGIKLIYAPLERHMVEGI CCCEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHH QCLHFNFSSQRAKDVLAARIKSGHFKVPHDVSAEYIKQMQAESKQESIDKRTGRVSLKWL EEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEE ASGNNSHMWDCSCMAVIFAMIHRMI ECCCCCCEECHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA