Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is agaA [H]
Identifier: 187735681
GI number: 187735681
Start: 1423063
End: 1424664
Strand: Direct
Name: agaA [H]
Synonym: Amuc_1187
Alternate gene names: 187735681
Gene position: 1423063-1424664 (Clockwise)
Preceding gene: 187735680
Following gene: 187735684
Centisome position: 53.42
GC content: 56.49
Gene sequence:
>1602_bases ATGAGATTGTACCATTTTTTACTCCCTGCCGTTGTCAGCGCTGCCGTATCTGCGTCATTTGGGGCAGAGTTCCCTAATCC CTATCCTGCGCCCGCTCCCGGTGTCCGCCTGACTCCAGAGATTCCGCTTTCACCCTCCATTAATGGCGCCCGTATCGTCG GGGCTACCCCCGGTTCCCGCATGCTGTTCCAGGTTCCCGTCTCCGGGGAGCGGCCCATGAAAATTCAGGCAACAGGGCTG CCCCCAGGCCTGAAGATGGATTCGCGCGGATTGATTTCGGGTACCGCTCCGTCCGGGAAGAGGGAATACAAGGTAAATAT CCAGGCTTCCAACAGGCATGGAAAGGACATGAAGGAGCTGATTCTGAAGGTGGGGGACGAATTGTGCCTGACTCCGCCCA TGGGCTGGAGCAGCTGGTATTCCTACAGTGAGGCCGTAGGGGAGGATAATGTGCTGAAGACGGCACGGCTTTTTGTGGAA CGGGGTCTGGTCAATCATGGCTGGGCCTATATCAACATTGACGACTGCTGGCAGGGCAGGCGCGGAGGGAAGTATGGCGC CATTCAACCCAATAAGCGTTTTCCTGACATGAAGGCCATGTGCGACGCTATTCACGCCATGGGCATGAAAGCGGGCATTT ATTCCACGCCTTGGATGGGAACGTATGCCGGTTTTATCGGAGGGAGCGCGCCCAACGCTAAGCCGGACTACGGGGAAATG GCCATTCCGGAAAAGGAGCGCAAGCAGGAGGATCAAATCTTTGGAAGTTATCCGGGAGTTCATCGCAGAAAGGCGGATCA TGTGGGAGCCGTCTGGCTGTTTGACCGTGACGCTAAACAATGGGCGGATTGGGGGTTCGATTATGTGAAAGTGGATTGGA ATCCCAACGATGTGTCTACGACAAAGCGCATCCGCAAGGCGCTGGACGAGTCCGGGAGGGATATCGTGCTCAGCCTGTCC AATGCCGCCCCGTACGAACATGTGGAAGAGCTGGGCAAGCTGGCGAATTTATGGCGGACGACGGGGGATATCCAGGATCA CTGGGGCAGCGTCAGCGGCATCGGTTTTTCCCAGGAACGCTGGCAGAAGCATATGCGCCCGGGACATTGGAATGATCCGG ACATCCTCCAGATCGGGAAGCTGGGCAAACCCAACCAGCCCAACACCACGTTTGTCCAGACGCGGCTGACTCCGGATGAA CAGTACACCCATGTGACCCTGTGGTGCCTGCTGTCCGCTCCGCTCATCGTCTCCTGTGATTTGGAGCATATTGATTCGTT TACGATGGGACTGCTTACCAATGATGAGGTGATAGCGGTGGATCAGGATCCGGCTGCCCGTCCCGCCCGCAAAGCGTGGC ACCAGGGGAATTTCCAGGTGTGGATGAAGGAGTTGTCCGACGGTTCCGTGGCGGCTGGCTTTTTCAATACCGGGAAGGAG AAAGGAATTTTGAAGGTGAATCTGAAGGAGCTGGGGCTTTCCGGAGCGTATGAGGCAAGGGACCTCTGGAAACGCGCTGA CCAGGGGACCGTACAGGGAGATATGGCGGTAGAATTGAACGGGCATGGAGCATCCATGTTCCGGTTCAGCAAAAAGAAGT AA
Upstream 100 bases:
>100_bases CGCAGAAACAGGATGGACTGCGGAAGGAGGGAGGAATGGGGTCAATGAAAGGAATGACAAAGCAACTACGTTTTTAAGGT ACACCTTTATAACCCTGTTT
Downstream 100 bases:
>100_bases CGGGAAGGAGACGGCTCTGTATTCATTCAGGGGCGGCGGGGATATGCCGCCCCTGAAGCCTGTGGCAGGGGAGGCTTTTC ATTGAACCGGCATCCATAGA
Product: Alpha-galactosidase
Products: NA
Alternate protein names: Alpha-D-galactoside galactohydrolase; Alpha-galactosidase 27A; Melibiase [H]
Number of amino acids: Translated: 533; Mature: 533
Protein sequence:
>533_residues MRLYHFLLPAVVSAAVSASFGAEFPNPYPAPAPGVRLTPEIPLSPSINGARIVGATPGSRMLFQVPVSGERPMKIQATGL PPGLKMDSRGLISGTAPSGKREYKVNIQASNRHGKDMKELILKVGDELCLTPPMGWSSWYSYSEAVGEDNVLKTARLFVE RGLVNHGWAYINIDDCWQGRRGGKYGAIQPNKRFPDMKAMCDAIHAMGMKAGIYSTPWMGTYAGFIGGSAPNAKPDYGEM AIPEKERKQEDQIFGSYPGVHRRKADHVGAVWLFDRDAKQWADWGFDYVKVDWNPNDVSTTKRIRKALDESGRDIVLSLS NAAPYEHVEELGKLANLWRTTGDIQDHWGSVSGIGFSQERWQKHMRPGHWNDPDILQIGKLGKPNQPNTTFVQTRLTPDE QYTHVTLWCLLSAPLIVSCDLEHIDSFTMGLLTNDEVIAVDQDPAARPARKAWHQGNFQVWMKELSDGSVAAGFFNTGKE KGILKVNLKELGLSGAYEARDLWKRADQGTVQGDMAVELNGHGASMFRFSKKK
Sequences:
>Translated_533_residues MRLYHFLLPAVVSAAVSASFGAEFPNPYPAPAPGVRLTPEIPLSPSINGARIVGATPGSRMLFQVPVSGERPMKIQATGL PPGLKMDSRGLISGTAPSGKREYKVNIQASNRHGKDMKELILKVGDELCLTPPMGWSSWYSYSEAVGEDNVLKTARLFVE RGLVNHGWAYINIDDCWQGRRGGKYGAIQPNKRFPDMKAMCDAIHAMGMKAGIYSTPWMGTYAGFIGGSAPNAKPDYGEM AIPEKERKQEDQIFGSYPGVHRRKADHVGAVWLFDRDAKQWADWGFDYVKVDWNPNDVSTTKRIRKALDESGRDIVLSLS NAAPYEHVEELGKLANLWRTTGDIQDHWGSVSGIGFSQERWQKHMRPGHWNDPDILQIGKLGKPNQPNTTFVQTRLTPDE QYTHVTLWCLLSAPLIVSCDLEHIDSFTMGLLTNDEVIAVDQDPAARPARKAWHQGNFQVWMKELSDGSVAAGFFNTGKE KGILKVNLKELGLSGAYEARDLWKRADQGTVQGDMAVELNGHGASMFRFSKKK >Mature_533_residues MRLYHFLLPAVVSAAVSASFGAEFPNPYPAPAPGVRLTPEIPLSPSINGARIVGATPGSRMLFQVPVSGERPMKIQATGL PPGLKMDSRGLISGTAPSGKREYKVNIQASNRHGKDMKELILKVGDELCLTPPMGWSSWYSYSEAVGEDNVLKTARLFVE RGLVNHGWAYINIDDCWQGRRGGKYGAIQPNKRFPDMKAMCDAIHAMGMKAGIYSTPWMGTYAGFIGGSAPNAKPDYGEM AIPEKERKQEDQIFGSYPGVHRRKADHVGAVWLFDRDAKQWADWGFDYVKVDWNPNDVSTTKRIRKALDESGRDIVLSLS NAAPYEHVEELGKLANLWRTTGDIQDHWGSVSGIGFSQERWQKHMRPGHWNDPDILQIGKLGKPNQPNTTFVQTRLTPDE QYTHVTLWCLLSAPLIVSCDLEHIDSFTMGLLTNDEVIAVDQDPAARPARKAWHQGNFQVWMKELSDGSVAAGFFNTGKE KGILKVNLKELGLSGAYEARDLWKRADQGTVQGDMAVELNGHGASMFRFSKKK
Specific function: Hydrolyzes galactomannan found in plant cell wall, by cleaving alpha-1,6-D-galactose side-chains from the mannan backbone. Appears to act in synergy with mannanase (ManA) to elicit hydrolysis of galactomannan. Has greater activity against galactomannans w
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 27 family [H]
Homologues:
Organism=Homo sapiens, GI4504009, Length=375, Percent_Identity=29.8666666666667, Blast_Score=147, Evalue=2e-35, Organism=Homo sapiens, GI4557781, Length=414, Percent_Identity=28.5024154589372, Blast_Score=144, Evalue=1e-34, Organism=Caenorhabditis elegans, GI17562946, Length=452, Percent_Identity=28.7610619469027, Blast_Score=130, Evalue=2e-30, Organism=Drosophila melanogaster, GI24583253, Length=441, Percent_Identity=30.6122448979592, Blast_Score=162, Evalue=7e-40, Organism=Drosophila melanogaster, GI19922382, Length=452, Percent_Identity=27.8761061946903, Blast_Score=156, Evalue=3e-38, Organism=Drosophila melanogaster, GI24654142, Length=452, Percent_Identity=27.8761061946903, Blast_Score=156, Evalue=3e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR013780 - InterPro: IPR002241 - InterPro: IPR017853 - InterPro: IPR000111 [H]
Pfam domain/function: PF02065 Melibiase [H]
EC number: =3.2.1.22 [H]
Molecular weight: Translated: 59098; Mature: 59098
Theoretical pI: Translated: 8.63; Mature: 8.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLYHFLLPAVVSAAVSASFGAEFPNPYPAPAPGVRLTPEIPLSPSINGARIVGATPGSR CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEECCCCCC MLFQVPVSGERPMKIQATGLPPGLKMDSRGLISGTAPSGKREYKVNIQASNRHGKDMKEL EEEEECCCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCCEEEEEEEECCCCCCHHHHH ILKVGDELCLTPPMGWSSWYSYSEAVGEDNVLKTARLFVERGLVNHGWAYINIDDCWQGR HHHCCCCEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHCCEEEEEEHHHCCCC RGGKYGAIQPNKRFPDMKAMCDAIHAMGMKAGIYSTPWMGTYAGFIGGSAPNAKPDYGEM CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC AIPEKERKQEDQIFGSYPGVHRRKADHVGAVWLFDRDAKQWADWGFDYVKVDWNPNDVST CCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCHHHHHHCCCEEEEEECCCCCHHH TKRIRKALDESGRDIVLSLSNAAPYEHVEELGKLANLWRTTGDIQDHWGSVSGIGFSQER HHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCHHH WQKHMRPGHWNDPDILQIGKLGKPNQPNTTFVQTRLTPDEQYTHVTLWCLLSAPLIVSCD HHHHCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCHHEEEEEEECCCCEEEEEC LEHIDSFTMGLLTNDEVIAVDQDPAARPARKAWHQGNFQVWMKELSDGSVAAGFFNTGKE HHHHCCHHEEEECCCCEEEECCCCCCCHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCC KGILKVNLKELGLSGAYEARDLWKRADQGTVQGDMAVELNGHGASMFRFSKKK CCEEEEEHHHHCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEECCCC >Mature Secondary Structure MRLYHFLLPAVVSAAVSASFGAEFPNPYPAPAPGVRLTPEIPLSPSINGARIVGATPGSR CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEECCCCCC MLFQVPVSGERPMKIQATGLPPGLKMDSRGLISGTAPSGKREYKVNIQASNRHGKDMKEL EEEEECCCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCCEEEEEEEECCCCCCHHHHH ILKVGDELCLTPPMGWSSWYSYSEAVGEDNVLKTARLFVERGLVNHGWAYINIDDCWQGR HHHCCCCEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHCCEEEEEEHHHCCCC RGGKYGAIQPNKRFPDMKAMCDAIHAMGMKAGIYSTPWMGTYAGFIGGSAPNAKPDYGEM CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC AIPEKERKQEDQIFGSYPGVHRRKADHVGAVWLFDRDAKQWADWGFDYVKVDWNPNDVST CCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCHHHHHHCCCEEEEEECCCCCHHH TKRIRKALDESGRDIVLSLSNAAPYEHVEELGKLANLWRTTGDIQDHWGSVSGIGFSQER HHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCHHH WQKHMRPGHWNDPDILQIGKLGKPNQPNTTFVQTRLTPDEQYTHVTLWCLLSAPLIVSCD HHHHCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCHHEEEEEEECCCCEEEEEC LEHIDSFTMGLLTNDEVIAVDQDPAARPARKAWHQGNFQVWMKELSDGSVAAGFFNTGKE HHHHCCHHEEEECCCCEEEECCCCCCCHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCC KGILKVNLKELGLSGAYEARDLWKRADQGTVQGDMAVELNGHGASMFRFSKKK CCEEEEEHHHHCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA