Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is lutR [H]
Identifier: 187735674
GI number: 187735674
Start: 1414971
End: 1415666
Strand: Direct
Name: lutR [H]
Synonym: Amuc_1180
Alternate gene names: 187735674
Gene position: 1414971-1415666 (Clockwise)
Preceding gene: 187735673
Following gene: 187735675
Centisome position: 53.11
GC content: 57.04
Gene sequence:
>696_bases ATGAAGCAGTCCAAGACAATGGAGCTGAAGAAACCGGTGCGGGTGTCCCTGGCCCGCCAGGTGCTTACCGCCATGGAATC CATGATACGGTCCGGCAAATGGAAGGTTGGAGACCGCATTCCCGCGGAAGCGGAACTGGCCCGTGCCTTTTCCGTCAGCC ACAACACCATCCGCGAAGCCCTTCAATCCCTGATTCACATGGGGATGCTGGAAGCGCGCCCCGGAGACGGCACGTACGTG ATGGCGTCAGACCGCTTTGCCGTCGCGGTGAGCAACCGCCTCAAGGAATCCGAGCTGCCTCAGATTCTGGAGGCGCGGCT GGCTTTGGAAAAGGAAATTGCGCGGCTGGCCGCCGTTAAAAGGACGGATGAAGATTTGAAGGAGCTGGAAAATGCCCTGA AGGACTGCCACGGCAGGGTAAGGCAGGGCATTGAGGATGACATGCTGTTTCATGCCGCCGTGGCCCGCGCCACGCATAAT CCGGTGCTCTCGGAATTGTATAACGTGGTCATCCGCCATGTGCAGGAGAATCTGGAAAAGCTGCTTCAGGAGAAGCAATA CGACTCCGGCGCCATGAAGCTGCATGACGACCTTCTCGCAGCCATCAGGAAGCAGGAGGCGGATGAAGCGGAGAACATTA TTGTAAAGATTGTGGAATTTGACACCGTCAGCATAGGCGGGGCATTCATTTCTTGA
Upstream 100 bases:
>100_bases GGTGCTGACGGAGGAAAACCTGAAAGACGCCTTTGGGCTGGATATCCAGTTAATCAAGACGGAGAAGGGGCGTCTCTGGA CCGTTATCCGATAATTTTTC
Downstream 100 bases:
>100_bases ATTGCCGGCAGGGAAGATGCCGTTGCGGTGGCAGAGTTATTCTTTTTTATTTCCCGGTGCTTTTCTTGCCAGCGGGCTTT CCGGCAAATAACTGCGTTCT
Product: GntR domain protein
Products: NA
Alternate protein names: L-lactate utilization operon repressor [H]
Number of amino acids: Translated: 231; Mature: 231
Protein sequence:
>231_residues MKQSKTMELKKPVRVSLARQVLTAMESMIRSGKWKVGDRIPAEAELARAFSVSHNTIREALQSLIHMGMLEARPGDGTYV MASDRFAVAVSNRLKESELPQILEARLALEKEIARLAAVKRTDEDLKELENALKDCHGRVRQGIEDDMLFHAAVARATHN PVLSELYNVVIRHVQENLEKLLQEKQYDSGAMKLHDDLLAAIRKQEADEAENIIVKIVEFDTVSIGGAFIS
Sequences:
>Translated_231_residues MKQSKTMELKKPVRVSLARQVLTAMESMIRSGKWKVGDRIPAEAELARAFSVSHNTIREALQSLIHMGMLEARPGDGTYV MASDRFAVAVSNRLKESELPQILEARLALEKEIARLAAVKRTDEDLKELENALKDCHGRVRQGIEDDMLFHAAVARATHN PVLSELYNVVIRHVQENLEKLLQEKQYDSGAMKLHDDLLAAIRKQEADEAENIIVKIVEFDTVSIGGAFIS >Mature_231_residues MKQSKTMELKKPVRVSLARQVLTAMESMIRSGKWKVGDRIPAEAELARAFSVSHNTIREALQSLIHMGMLEARPGDGTYV MASDRFAVAVSNRLKESELPQILEARLALEKEIARLAAVKRTDEDLKELENALKDCHGRVRQGIEDDMLFHAAVARATHN PVLSELYNVVIRHVQENLEKLLQEKQYDSGAMKLHDDLLAAIRKQEADEAENIIVKIVEFDTVSIGGAFIS
Specific function: Negatively regulates the transcription of the lutABC operon, which is required for L-lactate utilization. LutR activity is regulated by lactate, since presence of L-lactate, that probably binds to lutR, leads to derepression of the operon. Also appears to
COG id: COG2186
COG function: function code K; Transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1790780, Length=229, Percent_Identity=29.6943231441048, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI48994955, Length=226, Percent_Identity=28.7610619469027, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI87082208, Length=219, Percent_Identity=27.3972602739726, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1786303, Length=177, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011711 - InterPro: IPR000524 - InterPro: IPR011991 [H]
Pfam domain/function: PF07729 FCD; PF00392 GntR [H]
EC number: NA
Molecular weight: Translated: 25897; Mature: 25897
Theoretical pI: Translated: 6.64; Mature: 6.64
Prosite motif: PS50949 HTH_GNTR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQSKTMELKKPVRVSLARQVLTAMESMIRSGKWKVGDRIPAEAELARAFSVSHNTIREA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH LQSLIHMGMLEARPGDGTYVMASDRFAVAVSNRLKESELPQILEARLALEKEIARLAAVK HHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH RTDEDLKELENALKDCHGRVRQGIEDDMLFHAAVARATHNPVLSELYNVVIRHVQENLEK CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH LLQEKQYDSGAMKLHDDLLAAIRKQEADEAENIIVKIVEFDTVSIGGAFIS HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEECCCHHCC >Mature Secondary Structure MKQSKTMELKKPVRVSLARQVLTAMESMIRSGKWKVGDRIPAEAELARAFSVSHNTIREA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH LQSLIHMGMLEARPGDGTYVMASDRFAVAVSNRLKESELPQILEARLALEKEIARLAAVK HHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH RTDEDLKELENALKDCHGRVRQGIEDDMLFHAAVARATHNPVLSELYNVVIRHVQENLEK CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH LLQEKQYDSGAMKLHDDLLAAIRKQEADEAENIIVKIVEFDTVSIGGAFIS HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEECCCHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]