Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

Click here to switch to the map view.

The map label for this gene is ylmA [H]

Identifier: 187735673

GI number: 187735673

Start: 1414167

End: 1414964

Strand: Direct

Name: ylmA [H]

Synonym: Amuc_1179

Alternate gene names: 187735673

Gene position: 1414167-1414964 (Clockwise)

Preceding gene: 187735672

Following gene: 187735674

Centisome position: 53.08

GC content: 55.26

Gene sequence:

>798_bases
ATGGAGCATGCCTCACCGGCCGTCAATGTAGAAAACGCTAGGGTATACCTGGGCGGGCACGAAATCCTGCACAATATTTC
CTGGCAGGTGCAGCGCGGAGAACGTTGTTTTATTCTGGGGGCCAACGGCGCCGGAAAGACAACGCTGGTCAAAGTGCTGA
TGGGGTTTGCATGGCCGCTTTTCGGAGCCAGGGTGCAGGTTCTGGGCAAGACCTTCGGGCACGTGAACCTGCTGGAATTG
CGCAAGTCCATTGCGTGGGTGAGTCCGTTCATGCACAAGTGGCTGGAGGATGGCTCCTGGAACGGGCGCGACATGGTGCT
TTCCGGCCCTGACGGAACTATCGGCCTCCTGAGGGAGCCGACGCCGGAAGAGGAGGAAAAAGCCGCAGGAATCATGAAAT
CCCTGAAAGCGGAGCATTTGATGGACAGGCCGGTGGTGGCCATGTCTTCCGGGGAACAGGTGAAAGTGCTGATTGCCCGG
GCTCTGATGACGAATCCGGAACTGATGATTCTGGACGAACCCAGCGTTTACCTGGATTTGGCAGGGCGGGAATTTTTGTT
GAAAACCATTGAAGAACTGGCTGAAACGAGGCCTGATCTGACCATCATGTTCATCACCCAGCGCATTGAAGATATCCTTC
CCGTATTTAACCGCGGCATGATTTTAAAGTCCGGAGAAATCGTGGCGCATGGAAGCCGGGACGAGGTGCTGACGGAGGAA
AACCTGAAAGACGCCTTTGGGCTGGATATCCAGTTAATCAAGACGGAGAAGGGGCGTCTCTGGACCGTTATCCGATAA

Upstream 100 bases:

>100_bases
AGGTTTCTTTTACTTGAAACACATGCCGTTCCGTCGGAATACGGCGGAGCGGCACGTATATTCCCGGGCTTTTCCCGGAA
ATCCGCCATTGATTCAGTTT

Downstream 100 bases:

>100_bases
TTTTTCATGAAGCAGTCCAAGACAATGGAGCTGAAGAAACCGGTGCGGGTGTCCCTGGCCCGCCAGGTGCTTACCGCCAT
GGAATCCATGATACGGTCCG

Product: ABC transporter

Products: ADP; phosphate; L-arginine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MEHASPAVNVENARVYLGGHEILHNISWQVQRGERCFILGANGAGKTTLVKVLMGFAWPLFGARVQVLGKTFGHVNLLEL
RKSIAWVSPFMHKWLEDGSWNGRDMVLSGPDGTIGLLREPTPEEEEKAAGIMKSLKAEHLMDRPVVAMSSGEQVKVLIAR
ALMTNPELMILDEPSVYLDLAGREFLLKTIEELAETRPDLTIMFITQRIEDILPVFNRGMILKSGEIVAHGSRDEVLTEE
NLKDAFGLDIQLIKTEKGRLWTVIR

Sequences:

>Translated_265_residues
MEHASPAVNVENARVYLGGHEILHNISWQVQRGERCFILGANGAGKTTLVKVLMGFAWPLFGARVQVLGKTFGHVNLLEL
RKSIAWVSPFMHKWLEDGSWNGRDMVLSGPDGTIGLLREPTPEEEEKAAGIMKSLKAEHLMDRPVVAMSSGEQVKVLIAR
ALMTNPELMILDEPSVYLDLAGREFLLKTIEELAETRPDLTIMFITQRIEDILPVFNRGMILKSGEIVAHGSRDEVLTEE
NLKDAFGLDIQLIKTEKGRLWTVIR
>Mature_265_residues
MEHASPAVNVENARVYLGGHEILHNISWQVQRGERCFILGANGAGKTTLVKVLMGFAWPLFGARVQVLGKTFGHVNLLEL
RKSIAWVSPFMHKWLEDGSWNGRDMVLSGPDGTIGLLREPTPEEEEKAAGIMKSLKAEHLMDRPVVAMSSGEQVKVLIAR
ALMTNPELMILDEPSVYLDLAGREFLLKTIEELAETRPDLTIMFITQRIEDILPVFNRGMILKSGEIVAHGSRDEVLTEE
NLKDAFGLDIQLIKTEKGRLWTVIR

Specific function: Part Of The Binding-Protein-Dependent Transport System For Arginine. Probably Responsible For Energy Coupling To The Transport System. [C]

COG id: COG1119

COG function: function code P; ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI42490749, Length=235, Percent_Identity=26.8085106382979, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI27436953, Length=215, Percent_Identity=26.046511627907, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI153792144, Length=235, Percent_Identity=23.8297872340426, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI1787089, Length=246, Percent_Identity=26.4227642276423, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1786975, Length=215, Percent_Identity=29.7674418604651, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789593, Length=245, Percent_Identity=27.7551020408163, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786803, Length=236, Percent_Identity=25.4237288135593, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789864, Length=259, Percent_Identity=24.3243243243243, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790544, Length=240, Percent_Identity=24.5833333333333, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788761, Length=239, Percent_Identity=25.9414225941423, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787758, Length=222, Percent_Identity=25.6756756756757, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790739, Length=243, Percent_Identity=22.6337448559671, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87081709, Length=232, Percent_Identity=23.2758620689655, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789873, Length=224, Percent_Identity=28.125, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI48995001, Length=235, Percent_Identity=28.936170212766, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788225, Length=240, Percent_Identity=28.3333333333333, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87081834, Length=178, Percent_Identity=29.2134831460674, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789962, Length=230, Percent_Identity=28.2608695652174, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789891, Length=233, Percent_Identity=28.755364806867, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1787547, Length=221, Percent_Identity=26.2443438914027, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1787112, Length=230, Percent_Identity=26.9565217391304, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789032, Length=224, Percent_Identity=27.2321428571429, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790525, Length=227, Percent_Identity=24.6696035242291, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786398, Length=221, Percent_Identity=25.3393665158371, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87082268, Length=99, Percent_Identity=37.3737373737374, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789991, Length=233, Percent_Identity=24.0343347639485, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787792, Length=237, Percent_Identity=23.2067510548523, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1786563, Length=212, Percent_Identity=28.3018867924528, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI1786345, Length=256, Percent_Identity=22.265625, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI48994943, Length=266, Percent_Identity=22.1804511278195, Blast_Score=61, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI193211017, Length=222, Percent_Identity=26.1261261261261, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71996809, Length=222, Percent_Identity=26.1261261261261, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI193211015, Length=222, Percent_Identity=26.1261261261261, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI115534520, Length=248, Percent_Identity=24.5967741935484, Blast_Score=67, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 29649; Mature: 29649

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS00142 ZINC_PROTEASE ; PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHASPAVNVENARVYLGGHEILHNISWQVQRGERCFILGANGAGKTTLVKVLMGFAWPL
CCCCCCCCEECCCEEEECHHHHHHCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHH
FGARVQVLGKTFGHVNLLELRKSIAWVSPFMHKWLEDGSWNGRDMVLSGPDGTIGLLREP
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCCC
TPEEEEKAAGIMKSLKAEHLMDRPVVAMSSGEQVKVLIARALMTNPELMILDEPSVYLDL
CCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCEEEEE
AGREFLLKTIEELAETRPDLTIMFITQRIEDILPVFNRGMILKSGEIVAHGSRDEVLTEE
CCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCHH
NLKDAFGLDIQLIKTEKGRLWTVIR
CCHHHHCCEEEEEEECCCCEEEEEC
>Mature Secondary Structure
MEHASPAVNVENARVYLGGHEILHNISWQVQRGERCFILGANGAGKTTLVKVLMGFAWPL
CCCCCCCCEECCCEEEECHHHHHHCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHH
FGARVQVLGKTFGHVNLLELRKSIAWVSPFMHKWLEDGSWNGRDMVLSGPDGTIGLLREP
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCCC
TPEEEEKAAGIMKSLKAEHLMDRPVVAMSSGEQVKVLIARALMTNPELMILDEPSVYLDL
CCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCEEEEE
AGREFLLKTIEELAETRPDLTIMFITQRIEDILPVFNRGMILKSGEIVAHGSRDEVLTEE
CCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCHH
NLKDAFGLDIQLIKTEKGRLWTVIR
CCHHHHCCEEEEEEECCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-arginine [Periplasm]; H2O [C]

Specific reaction: ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]