Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is ylmA [H]
Identifier: 187735673
GI number: 187735673
Start: 1414167
End: 1414964
Strand: Direct
Name: ylmA [H]
Synonym: Amuc_1179
Alternate gene names: 187735673
Gene position: 1414167-1414964 (Clockwise)
Preceding gene: 187735672
Following gene: 187735674
Centisome position: 53.08
GC content: 55.26
Gene sequence:
>798_bases ATGGAGCATGCCTCACCGGCCGTCAATGTAGAAAACGCTAGGGTATACCTGGGCGGGCACGAAATCCTGCACAATATTTC CTGGCAGGTGCAGCGCGGAGAACGTTGTTTTATTCTGGGGGCCAACGGCGCCGGAAAGACAACGCTGGTCAAAGTGCTGA TGGGGTTTGCATGGCCGCTTTTCGGAGCCAGGGTGCAGGTTCTGGGCAAGACCTTCGGGCACGTGAACCTGCTGGAATTG CGCAAGTCCATTGCGTGGGTGAGTCCGTTCATGCACAAGTGGCTGGAGGATGGCTCCTGGAACGGGCGCGACATGGTGCT TTCCGGCCCTGACGGAACTATCGGCCTCCTGAGGGAGCCGACGCCGGAAGAGGAGGAAAAAGCCGCAGGAATCATGAAAT CCCTGAAAGCGGAGCATTTGATGGACAGGCCGGTGGTGGCCATGTCTTCCGGGGAACAGGTGAAAGTGCTGATTGCCCGG GCTCTGATGACGAATCCGGAACTGATGATTCTGGACGAACCCAGCGTTTACCTGGATTTGGCAGGGCGGGAATTTTTGTT GAAAACCATTGAAGAACTGGCTGAAACGAGGCCTGATCTGACCATCATGTTCATCACCCAGCGCATTGAAGATATCCTTC CCGTATTTAACCGCGGCATGATTTTAAAGTCCGGAGAAATCGTGGCGCATGGAAGCCGGGACGAGGTGCTGACGGAGGAA AACCTGAAAGACGCCTTTGGGCTGGATATCCAGTTAATCAAGACGGAGAAGGGGCGTCTCTGGACCGTTATCCGATAA
Upstream 100 bases:
>100_bases AGGTTTCTTTTACTTGAAACACATGCCGTTCCGTCGGAATACGGCGGAGCGGCACGTATATTCCCGGGCTTTTCCCGGAA ATCCGCCATTGATTCAGTTT
Downstream 100 bases:
>100_bases TTTTTCATGAAGCAGTCCAAGACAATGGAGCTGAAGAAACCGGTGCGGGTGTCCCTGGCCCGCCAGGTGCTTACCGCCAT GGAATCCATGATACGGTCCG
Product: ABC transporter
Products: ADP; phosphate; L-arginine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 265; Mature: 265
Protein sequence:
>265_residues MEHASPAVNVENARVYLGGHEILHNISWQVQRGERCFILGANGAGKTTLVKVLMGFAWPLFGARVQVLGKTFGHVNLLEL RKSIAWVSPFMHKWLEDGSWNGRDMVLSGPDGTIGLLREPTPEEEEKAAGIMKSLKAEHLMDRPVVAMSSGEQVKVLIAR ALMTNPELMILDEPSVYLDLAGREFLLKTIEELAETRPDLTIMFITQRIEDILPVFNRGMILKSGEIVAHGSRDEVLTEE NLKDAFGLDIQLIKTEKGRLWTVIR
Sequences:
>Translated_265_residues MEHASPAVNVENARVYLGGHEILHNISWQVQRGERCFILGANGAGKTTLVKVLMGFAWPLFGARVQVLGKTFGHVNLLEL RKSIAWVSPFMHKWLEDGSWNGRDMVLSGPDGTIGLLREPTPEEEEKAAGIMKSLKAEHLMDRPVVAMSSGEQVKVLIAR ALMTNPELMILDEPSVYLDLAGREFLLKTIEELAETRPDLTIMFITQRIEDILPVFNRGMILKSGEIVAHGSRDEVLTEE NLKDAFGLDIQLIKTEKGRLWTVIR >Mature_265_residues MEHASPAVNVENARVYLGGHEILHNISWQVQRGERCFILGANGAGKTTLVKVLMGFAWPLFGARVQVLGKTFGHVNLLEL RKSIAWVSPFMHKWLEDGSWNGRDMVLSGPDGTIGLLREPTPEEEEKAAGIMKSLKAEHLMDRPVVAMSSGEQVKVLIAR ALMTNPELMILDEPSVYLDLAGREFLLKTIEELAETRPDLTIMFITQRIEDILPVFNRGMILKSGEIVAHGSRDEVLTEE NLKDAFGLDIQLIKTEKGRLWTVIR
Specific function: Part Of The Binding-Protein-Dependent Transport System For Arginine. Probably Responsible For Energy Coupling To The Transport System. [C]
COG id: COG1119
COG function: function code P; ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA
Gene ontology:
Cell location: Inner Membrane-Associated [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42490749, Length=235, Percent_Identity=26.8085106382979, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI27436953, Length=215, Percent_Identity=26.046511627907, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI153792144, Length=235, Percent_Identity=23.8297872340426, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1787089, Length=246, Percent_Identity=26.4227642276423, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1786975, Length=215, Percent_Identity=29.7674418604651, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1789593, Length=245, Percent_Identity=27.7551020408163, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1786803, Length=236, Percent_Identity=25.4237288135593, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1789864, Length=259, Percent_Identity=24.3243243243243, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1790544, Length=240, Percent_Identity=24.5833333333333, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788761, Length=239, Percent_Identity=25.9414225941423, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787758, Length=222, Percent_Identity=25.6756756756757, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1790739, Length=243, Percent_Identity=22.6337448559671, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI87081709, Length=232, Percent_Identity=23.2758620689655, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1789873, Length=224, Percent_Identity=28.125, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI48995001, Length=235, Percent_Identity=28.936170212766, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788225, Length=240, Percent_Identity=28.3333333333333, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI87081834, Length=178, Percent_Identity=29.2134831460674, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1789962, Length=230, Percent_Identity=28.2608695652174, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1789891, Length=233, Percent_Identity=28.755364806867, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1787547, Length=221, Percent_Identity=26.2443438914027, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1787112, Length=230, Percent_Identity=26.9565217391304, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789032, Length=224, Percent_Identity=27.2321428571429, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1790525, Length=227, Percent_Identity=24.6696035242291, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1786398, Length=221, Percent_Identity=25.3393665158371, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI87082268, Length=99, Percent_Identity=37.3737373737374, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789991, Length=233, Percent_Identity=24.0343347639485, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1787792, Length=237, Percent_Identity=23.2067510548523, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1786563, Length=212, Percent_Identity=28.3018867924528, Blast_Score=61, Evalue=6e-11, Organism=Escherichia coli, GI1786345, Length=256, Percent_Identity=22.265625, Blast_Score=61, Evalue=7e-11, Organism=Escherichia coli, GI48994943, Length=266, Percent_Identity=22.1804511278195, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI193211017, Length=222, Percent_Identity=26.1261261261261, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71996809, Length=222, Percent_Identity=26.1261261261261, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193211015, Length=222, Percent_Identity=26.1261261261261, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI115534520, Length=248, Percent_Identity=24.5967741935484, Blast_Score=67, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 29649; Mature: 29649
Theoretical pI: Translated: 5.92; Mature: 5.92
Prosite motif: PS00142 ZINC_PROTEASE ; PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEHASPAVNVENARVYLGGHEILHNISWQVQRGERCFILGANGAGKTTLVKVLMGFAWPL CCCCCCCCEECCCEEEECHHHHHHCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHH FGARVQVLGKTFGHVNLLELRKSIAWVSPFMHKWLEDGSWNGRDMVLSGPDGTIGLLREP HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCCC TPEEEEKAAGIMKSLKAEHLMDRPVVAMSSGEQVKVLIARALMTNPELMILDEPSVYLDL CCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCEEEEE AGREFLLKTIEELAETRPDLTIMFITQRIEDILPVFNRGMILKSGEIVAHGSRDEVLTEE CCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCHH NLKDAFGLDIQLIKTEKGRLWTVIR CCHHHHCCEEEEEEECCCCEEEEEC >Mature Secondary Structure MEHASPAVNVENARVYLGGHEILHNISWQVQRGERCFILGANGAGKTTLVKVLMGFAWPL CCCCCCCCEECCCEEEECHHHHHHCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHH FGARVQVLGKTFGHVNLLELRKSIAWVSPFMHKWLEDGSWNGRDMVLSGPDGTIGLLREP HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCCC TPEEEEKAAGIMKSLKAEHLMDRPVVAMSSGEQVKVLIARALMTNPELMILDEPSVYLDL CCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCEEEEE AGREFLLKTIEELAETRPDLTIMFITQRIEDILPVFNRGMILKSGEIVAHGSRDEVLTEE CCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCHH NLKDAFGLDIQLIKTEKGRLWTVIR CCHHHHCCEEEEEEECCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-arginine [Periplasm]; H2O [C]
Specific reaction: ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]