Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is blc [H]
Identifier: 187735671
GI number: 187735671
Start: 1412210
End: 1412719
Strand: Direct
Name: blc [H]
Synonym: Amuc_1177
Alternate gene names: 187735671
Gene position: 1412210-1412719 (Clockwise)
Preceding gene: 187735670
Following gene: 187735672
Centisome position: 53.01
GC content: 54.71
Gene sequence:
>510_bases ATGAGCATGATACAGACCATCGTTACTTCCCTGTTTCACGGCCATTCCGTCAAAACCGATCCCATGCCGGATTTCAATCT GGAACGTTATCTGGGGGAATGGCACGAAATAGCCCGTCTGGAAAACTGGTTCGAGCGCGGGCTCAGCAGGGTTCTTGCCC GGTATGACCGCAGGGAGGACGGTTCCATTTCCGTGGTTAACAGCGGTTATGACGTTCGTACCGGGGAACGGAAGGAGGCG CGTGCACGGGCGGTGGCGGGGGATGCCCCCAATCATTTGAAAGTGTACTTTGTACCACTGGTATACGGCCGGTATGAAGT GGCTTTCCTGGATGAGAATTACACCCGCTCCGTAGTTTCCGGCGGTTCCCTGAATTATCTGTGGCTGCTTGCCCGCTCGC CGCAGTTGAAGGATGACGAGCTTCAGCCGATGCTTCATTGCGCGGAAAAACTGGGGTATGATACTTCCCGGTTGATTTAC GCCAATGTCCAGGCCTCTCCGGACAAATAA
Upstream 100 bases:
>100_bases GCGGCCAGTGCGCCGTTCCGGAGACGCTGATGAGGGAAGGGTTTACATTCCAATATCCGGATATCCGCACTTTTTTTAAC AAAGCATTTTCTGTCAAATC
Downstream 100 bases:
>100_bases CATGGGGCGGGCTTGAAGAAGCGGCGTGCCGTGAATATGGGATATTTCTGAAATGGGGAATGTGGAAAAGGTGGCTTTCC TCCTGCCAGGAAAAAATTTT
Product: Lipocalin family protein
Products: NA
Alternate protein names: Protein vlp [H]
Number of amino acids: Translated: 169; Mature: 168
Protein sequence:
>169_residues MSMIQTIVTSLFHGHSVKTDPMPDFNLERYLGEWHEIARLENWFERGLSRVLARYDRREDGSISVVNSGYDVRTGERKEA RARAVAGDAPNHLKVYFVPLVYGRYEVAFLDENYTRSVVSGGSLNYLWLLARSPQLKDDELQPMLHCAEKLGYDTSRLIY ANVQASPDK
Sequences:
>Translated_169_residues MSMIQTIVTSLFHGHSVKTDPMPDFNLERYLGEWHEIARLENWFERGLSRVLARYDRREDGSISVVNSGYDVRTGERKEA RARAVAGDAPNHLKVYFVPLVYGRYEVAFLDENYTRSVVSGGSLNYLWLLARSPQLKDDELQPMLHCAEKLGYDTSRLIY ANVQASPDK >Mature_168_residues SMIQTIVTSLFHGHSVKTDPMPDFNLERYLGEWHEIARLENWFERGLSRVLARYDRREDGSISVVNSGYDVRTGERKEAR ARAVAGDAPNHLKVYFVPLVYGRYEVAFLDENYTRSVVSGGSLNYLWLLARSPQLKDDELQPMLHCAEKLGYDTSRLIYA NVQASPDK
Specific function: Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids [H]
COG id: COG3040
COG function: function code M; Bacterial lipocalin
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the calycin superfamily. Lipocalin family [H]
Homologues:
Organism=Escherichia coli, GI1790592, Length=145, Percent_Identity=40, Blast_Score=115, Evalue=2e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012674 - InterPro: IPR011038 - InterPro: IPR013208 - InterPro: IPR022271 - InterPro: IPR002446 - InterPro: IPR022272 [H]
Pfam domain/function: PF08212 Lipocalin_2 [H]
EC number: NA
Molecular weight: Translated: 19386; Mature: 19255
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMIQTIVTSLFHGHSVKTDPMPDFNLERYLGEWHEIARLENWFERGLSRVLARYDRRED CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GSISVVNSGYDVRTGERKEARARAVAGDAPNHLKVYFVPLVYGRYEVAFLDENYTRSVVS CCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEECCCCHHHHHC GGSLNYLWLLARSPQLKDDELQPMLHCAEKLGYDTSRLIYANVQASPDK CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC >Mature Secondary Structure SMIQTIVTSLFHGHSVKTDPMPDFNLERYLGEWHEIARLENWFERGLSRVLARYDRRED HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GSISVVNSGYDVRTGERKEARARAVAGDAPNHLKVYFVPLVYGRYEVAFLDENYTRSVVS CCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEECCCCHHHHHC GGSLNYLWLLARSPQLKDDELQPMLHCAEKLGYDTSRLIYANVQASPDK CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8514410; 10952301 [H]