Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is blc [H]

Identifier: 187735671

GI number: 187735671

Start: 1412210

End: 1412719

Strand: Direct

Name: blc [H]

Synonym: Amuc_1177

Alternate gene names: 187735671

Gene position: 1412210-1412719 (Clockwise)

Preceding gene: 187735670

Following gene: 187735672

Centisome position: 53.01

GC content: 54.71

Gene sequence:

>510_bases
ATGAGCATGATACAGACCATCGTTACTTCCCTGTTTCACGGCCATTCCGTCAAAACCGATCCCATGCCGGATTTCAATCT
GGAACGTTATCTGGGGGAATGGCACGAAATAGCCCGTCTGGAAAACTGGTTCGAGCGCGGGCTCAGCAGGGTTCTTGCCC
GGTATGACCGCAGGGAGGACGGTTCCATTTCCGTGGTTAACAGCGGTTATGACGTTCGTACCGGGGAACGGAAGGAGGCG
CGTGCACGGGCGGTGGCGGGGGATGCCCCCAATCATTTGAAAGTGTACTTTGTACCACTGGTATACGGCCGGTATGAAGT
GGCTTTCCTGGATGAGAATTACACCCGCTCCGTAGTTTCCGGCGGTTCCCTGAATTATCTGTGGCTGCTTGCCCGCTCGC
CGCAGTTGAAGGATGACGAGCTTCAGCCGATGCTTCATTGCGCGGAAAAACTGGGGTATGATACTTCCCGGTTGATTTAC
GCCAATGTCCAGGCCTCTCCGGACAAATAA

Upstream 100 bases:

>100_bases
GCGGCCAGTGCGCCGTTCCGGAGACGCTGATGAGGGAAGGGTTTACATTCCAATATCCGGATATCCGCACTTTTTTTAAC
AAAGCATTTTCTGTCAAATC

Downstream 100 bases:

>100_bases
CATGGGGCGGGCTTGAAGAAGCGGCGTGCCGTGAATATGGGATATTTCTGAAATGGGGAATGTGGAAAAGGTGGCTTTCC
TCCTGCCAGGAAAAAATTTT

Product: Lipocalin family protein

Products: NA

Alternate protein names: Protein vlp [H]

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MSMIQTIVTSLFHGHSVKTDPMPDFNLERYLGEWHEIARLENWFERGLSRVLARYDRREDGSISVVNSGYDVRTGERKEA
RARAVAGDAPNHLKVYFVPLVYGRYEVAFLDENYTRSVVSGGSLNYLWLLARSPQLKDDELQPMLHCAEKLGYDTSRLIY
ANVQASPDK

Sequences:

>Translated_169_residues
MSMIQTIVTSLFHGHSVKTDPMPDFNLERYLGEWHEIARLENWFERGLSRVLARYDRREDGSISVVNSGYDVRTGERKEA
RARAVAGDAPNHLKVYFVPLVYGRYEVAFLDENYTRSVVSGGSLNYLWLLARSPQLKDDELQPMLHCAEKLGYDTSRLIY
ANVQASPDK
>Mature_168_residues
SMIQTIVTSLFHGHSVKTDPMPDFNLERYLGEWHEIARLENWFERGLSRVLARYDRREDGSISVVNSGYDVRTGERKEAR
ARAVAGDAPNHLKVYFVPLVYGRYEVAFLDENYTRSVVSGGSLNYLWLLARSPQLKDDELQPMLHCAEKLGYDTSRLIYA
NVQASPDK

Specific function: Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids [H]

COG id: COG3040

COG function: function code M; Bacterial lipocalin

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the calycin superfamily. Lipocalin family [H]

Homologues:

Organism=Escherichia coli, GI1790592, Length=145, Percent_Identity=40, Blast_Score=115, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012674
- InterPro:   IPR011038
- InterPro:   IPR013208
- InterPro:   IPR022271
- InterPro:   IPR002446
- InterPro:   IPR022272 [H]

Pfam domain/function: PF08212 Lipocalin_2 [H]

EC number: NA

Molecular weight: Translated: 19386; Mature: 19255

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMIQTIVTSLFHGHSVKTDPMPDFNLERYLGEWHEIARLENWFERGLSRVLARYDRRED
CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GSISVVNSGYDVRTGERKEARARAVAGDAPNHLKVYFVPLVYGRYEVAFLDENYTRSVVS
CCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEECCCCHHHHHC
GGSLNYLWLLARSPQLKDDELQPMLHCAEKLGYDTSRLIYANVQASPDK
CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
>Mature Secondary Structure 
SMIQTIVTSLFHGHSVKTDPMPDFNLERYLGEWHEIARLENWFERGLSRVLARYDRRED
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GSISVVNSGYDVRTGERKEARARAVAGDAPNHLKVYFVPLVYGRYEVAFLDENYTRSVVS
CCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEECCCCHHHHHC
GGSLNYLWLLARSPQLKDDELQPMLHCAEKLGYDTSRLIYANVQASPDK
CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8514410; 10952301 [H]